id ftpangaea:oai:pangaea.de:doi:10.1594/PANGAEA.957780
record_format openpolar
spelling ftpangaea:oai:pangaea.de:doi:10.1594/PANGAEA.957780 2023-06-11T04:15:05+02:00 Seawater carbonate chemistry and phenotypic Plasticity in Crassostrea virginica Larvae Barbosa, Michelle Schwaner, Caroline Espinosa, Emmanuelle Pales Allam, Bassem MEDIAN LATITUDE: 41.168275 * MEDIAN LONGITUDE: -72.212275 * SOUTH-BOUND LATITUDE: 40.884000 * WEST-BOUND LONGITUDE: -73.343200 * NORTH-BOUND LATITUDE: 41.930500 * EAST-BOUND LONGITUDE: -70.031000 2023-04-23 text/tab-separated-values, 1912 data points https://doi.pangaea.de/10.1594/PANGAEA.957780 en eng PANGAEA Barbosa, Michelle; Schwaner, Caroline; Espinosa, Emmanuelle Pales; Allam, Bassem (2022): A Transcriptomic Analysis of Phenotypic Plasticity in Crassostrea virginica Larvae under Experimental Acidification. Genes, 13(9), 1529, https://doi.org/10.3390/genes13091529 Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James; Gentili, Bernard; Hagens, Mathilde; Hofmann, Andreas; Mueller, Jens-Daniel; Proye, Aurélien; Rae, James; Soetaert, Karline (2022): seacarb: seawater carbonate chemistry with R. R package version 3.3.1. https://cran.r-project.org/web/packages/seacarb/index.html https://doi.pangaea.de/10.1594/PANGAEA.957780 CC-BY-4.0: Creative Commons Attribution 4.0 International Access constraints: unrestricted info:eu-repo/semantics/openAccess Alkalinity total standard deviation Animalia Aragonite saturation state Bicarbonate ion Calcite saturation state Calculated using seacarb Calculated using seacarb after Nisumaa et al. (2010) Carbon inorganic dissolved Carbonate ion Carbonate system computation flag Carbon dioxide Coast and continental shelf Containers and aquaria (20-1000 L or < 1 m**2) Coulometric titration Crassostrea virginica EXP Experiment Fugacity of carbon dioxide (water) at sea surface temperature (wet air) Growth/Morphology Identification Laboratory experiment Length Mollusca Mortality Mortality/Survival Mount_Sinai_Harbor North Atlantic Northport_NY OA-ICC Ocean Acidification International Coordination Centre Partial pressure of carbon dioxide Partial pressure of carbon dioxide (water) at sea surface temperature (wet air) Pelagos Dataset 2023 ftpangaea https://doi.org/10.3390/genes13091529 2023-04-26T05:38:36Z Ocean acidification (OA) is a major threat to marine calcifiers, and little is known regarding acclimation to OA in bivalves. This study combined physiological assays with next-generation sequencing to assess the potential for recovery from and acclimation to OA in the eastern oyster (Crassostrea virginica) and identify molecular mechanisms associated with resilience. In a reciprocal transplant experiment, larvae transplanted from elevated pCO2 (~1400 ppm) to ambient pCO2 (~350 ppm) demonstrated significantly lower mortality and larger size post-transplant than oysters remaining under elevated pCO2 and had similar mortality compared to those remaining in ambient conditions. The recovery after transplantation to ambient conditions demonstrates the ability for larvae to rebound and suggests phenotypic plasticity and acclimation. Transcriptomic analysis supported this hypothesis as genes were differentially regulated under OA stress. Transcriptomic profiles of transplanted and non-transplanted larvae terminating in the same final pCO2 converged, further supporting the idea that acclimation underlies resilience. The functions of differentially expressed genes included cell differentiation, development, biomineralization, ion exchange, and immunity. Results suggest acclimation as a mode of resilience to OA. In addition, the identification of genes associated with resilience can serve as a valuable resource for the aquaculture industry, as these could enable marker-assisted selection of OA-resilient stocks. Dataset North Atlantic Ocean acidification PANGAEA - Data Publisher for Earth & Environmental Science ENVELOPE(-73.343200,-70.031000,41.930500,40.884000)
institution Open Polar
collection PANGAEA - Data Publisher for Earth & Environmental Science
op_collection_id ftpangaea
language English
topic Alkalinity
total
standard deviation
Animalia
Aragonite saturation state
Bicarbonate ion
Calcite saturation state
Calculated using seacarb
Calculated using seacarb after Nisumaa et al. (2010)
Carbon
inorganic
dissolved
Carbonate ion
Carbonate system computation flag
Carbon dioxide
Coast and continental shelf
Containers and aquaria (20-1000 L or < 1 m**2)
Coulometric titration
Crassostrea virginica
EXP
Experiment
Fugacity of carbon dioxide (water) at sea surface temperature (wet air)
Growth/Morphology
Identification
Laboratory experiment
Length
Mollusca
Mortality
Mortality/Survival
Mount_Sinai_Harbor
North Atlantic
Northport_NY
OA-ICC
Ocean Acidification International Coordination Centre
Partial pressure of carbon dioxide
Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)
Pelagos
spellingShingle Alkalinity
total
standard deviation
Animalia
Aragonite saturation state
Bicarbonate ion
Calcite saturation state
Calculated using seacarb
Calculated using seacarb after Nisumaa et al. (2010)
Carbon
inorganic
dissolved
Carbonate ion
Carbonate system computation flag
Carbon dioxide
Coast and continental shelf
Containers and aquaria (20-1000 L or < 1 m**2)
Coulometric titration
Crassostrea virginica
EXP
Experiment
Fugacity of carbon dioxide (water) at sea surface temperature (wet air)
Growth/Morphology
Identification
Laboratory experiment
Length
Mollusca
Mortality
Mortality/Survival
Mount_Sinai_Harbor
North Atlantic
Northport_NY
OA-ICC
Ocean Acidification International Coordination Centre
Partial pressure of carbon dioxide
Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)
Pelagos
Barbosa, Michelle
Schwaner, Caroline
Espinosa, Emmanuelle Pales
Allam, Bassem
Seawater carbonate chemistry and phenotypic Plasticity in Crassostrea virginica Larvae
topic_facet Alkalinity
total
standard deviation
Animalia
Aragonite saturation state
Bicarbonate ion
Calcite saturation state
Calculated using seacarb
Calculated using seacarb after Nisumaa et al. (2010)
Carbon
inorganic
dissolved
Carbonate ion
Carbonate system computation flag
Carbon dioxide
Coast and continental shelf
Containers and aquaria (20-1000 L or < 1 m**2)
Coulometric titration
Crassostrea virginica
EXP
Experiment
Fugacity of carbon dioxide (water) at sea surface temperature (wet air)
Growth/Morphology
Identification
Laboratory experiment
Length
Mollusca
Mortality
Mortality/Survival
Mount_Sinai_Harbor
North Atlantic
Northport_NY
OA-ICC
Ocean Acidification International Coordination Centre
Partial pressure of carbon dioxide
Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)
Pelagos
description Ocean acidification (OA) is a major threat to marine calcifiers, and little is known regarding acclimation to OA in bivalves. This study combined physiological assays with next-generation sequencing to assess the potential for recovery from and acclimation to OA in the eastern oyster (Crassostrea virginica) and identify molecular mechanisms associated with resilience. In a reciprocal transplant experiment, larvae transplanted from elevated pCO2 (~1400 ppm) to ambient pCO2 (~350 ppm) demonstrated significantly lower mortality and larger size post-transplant than oysters remaining under elevated pCO2 and had similar mortality compared to those remaining in ambient conditions. The recovery after transplantation to ambient conditions demonstrates the ability for larvae to rebound and suggests phenotypic plasticity and acclimation. Transcriptomic analysis supported this hypothesis as genes were differentially regulated under OA stress. Transcriptomic profiles of transplanted and non-transplanted larvae terminating in the same final pCO2 converged, further supporting the idea that acclimation underlies resilience. The functions of differentially expressed genes included cell differentiation, development, biomineralization, ion exchange, and immunity. Results suggest acclimation as a mode of resilience to OA. In addition, the identification of genes associated with resilience can serve as a valuable resource for the aquaculture industry, as these could enable marker-assisted selection of OA-resilient stocks.
format Dataset
author Barbosa, Michelle
Schwaner, Caroline
Espinosa, Emmanuelle Pales
Allam, Bassem
author_facet Barbosa, Michelle
Schwaner, Caroline
Espinosa, Emmanuelle Pales
Allam, Bassem
author_sort Barbosa, Michelle
title Seawater carbonate chemistry and phenotypic Plasticity in Crassostrea virginica Larvae
title_short Seawater carbonate chemistry and phenotypic Plasticity in Crassostrea virginica Larvae
title_full Seawater carbonate chemistry and phenotypic Plasticity in Crassostrea virginica Larvae
title_fullStr Seawater carbonate chemistry and phenotypic Plasticity in Crassostrea virginica Larvae
title_full_unstemmed Seawater carbonate chemistry and phenotypic Plasticity in Crassostrea virginica Larvae
title_sort seawater carbonate chemistry and phenotypic plasticity in crassostrea virginica larvae
publisher PANGAEA
publishDate 2023
url https://doi.pangaea.de/10.1594/PANGAEA.957780
op_coverage MEDIAN LATITUDE: 41.168275 * MEDIAN LONGITUDE: -72.212275 * SOUTH-BOUND LATITUDE: 40.884000 * WEST-BOUND LONGITUDE: -73.343200 * NORTH-BOUND LATITUDE: 41.930500 * EAST-BOUND LONGITUDE: -70.031000
long_lat ENVELOPE(-73.343200,-70.031000,41.930500,40.884000)
genre North Atlantic
Ocean acidification
genre_facet North Atlantic
Ocean acidification
op_relation Barbosa, Michelle; Schwaner, Caroline; Espinosa, Emmanuelle Pales; Allam, Bassem (2022): A Transcriptomic Analysis of Phenotypic Plasticity in Crassostrea virginica Larvae under Experimental Acidification. Genes, 13(9), 1529, https://doi.org/10.3390/genes13091529
Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James; Gentili, Bernard; Hagens, Mathilde; Hofmann, Andreas; Mueller, Jens-Daniel; Proye, Aurélien; Rae, James; Soetaert, Karline (2022): seacarb: seawater carbonate chemistry with R. R package version 3.3.1. https://cran.r-project.org/web/packages/seacarb/index.html
https://doi.pangaea.de/10.1594/PANGAEA.957780
op_rights CC-BY-4.0: Creative Commons Attribution 4.0 International
Access constraints: unrestricted
info:eu-repo/semantics/openAccess
op_doi https://doi.org/10.3390/genes13091529
_version_ 1768371630400077824