Seawater carbonate chemistry and cellular metabolism of the Arctic copepod Calanus glacialis
Using a targeted metabolomic approach we investigated the effects of low seawater pH on energy metabolism in two late copepodite stages (CIV and CV) of the keystone Arctic copepod species Calanus glacialis. Exposure to decreasing seawater pH (from 8.0 to 7.0) caused increased ATP, ADP and NAD+ and d...
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2022
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Online Access: | https://doi.pangaea.de/10.1594/PANGAEA.957185 https://doi.org/10.1594/PANGAEA.957185 |
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ftpangaea:oai:pangaea.de:doi:10.1594/PANGAEA.957185 2024-09-15T17:51:41+00:00 Seawater carbonate chemistry and cellular metabolism of the Arctic copepod Calanus glacialis Thor, Peter Vermandele, Fanny Bailey, Allison Guscelli, Ella Loubet‑Sartrou, Léa Dupont, Sam Calosi, Piero LATITUDE: 79.000000 * LONGITUDE: 11.700000 2022 text/tab-separated-values, 2720 data points https://doi.pangaea.de/10.1594/PANGAEA.957185 https://doi.org/10.1594/PANGAEA.957185 en eng PANGAEA Thor, Peter; Vermandele, Fanny; Bailey, Allison; Guscelli, Ella; Loubet‑Sartrou, Léa; Dupont, Sam; Calosi, Piero (2022): Ocean acidification causes fundamental changes in the cellular metabolism of the Arctic copepod Calanus glacialis as detected by metabolomic analysis. Scientific Reports, 12(1), 22223, https://doi.org/10.1038/s41598-022-26480-9 Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James; Gentili, Bernard; Hagens, Mathilde; Hofmann, Andreas; Mueller, Jens-Daniel; Proye, Aurélien; Rae, James; Soetaert, Karline (2022): seacarb: seawater carbonate chemistry with R. R package version 3.3.1. https://cran.r-project.org/web/packages/seacarb/index.html https://doi.pangaea.de/10.1594/PANGAEA.957185 https://doi.org/10.1594/PANGAEA.957185 CC-BY-4.0: Creative Commons Attribution 4.0 International Access constraints: unrestricted info:eu-repo/semantics/openAccess Alkalinity total standard deviation Animalia Aragonite saturation state Arctic Arthropoda Bicarbonate ion Bottles or small containers/Aquaria (<20 L) Calanus glacialis Calcite saturation state Calculated using seacarb after Nisumaa et al. (2010) Calculated using seacarb after Orr et al. (2018) Carbon inorganic dissolved Carbonate ion Carbonate system computation flag Carbon dioxide Coast and continental shelf EXP Experiment Fugacity of carbon dioxide (water) at sea surface temperature (wet air) Fugacity of carbon dioxide in seawater Kongsfjord_copepod Laboratory experiment Metabolite OA-ICC Ocean Acidification International Coordination Centre Other studied parameter or process Partial pressure of carbon dioxide Partial pressure of carbon dioxide (water) at sea surface temperature (wet air) dataset 2022 ftpangaea https://doi.org/10.1594/PANGAEA.95718510.1038/s41598-022-26480-9 2024-07-24T02:31:35Z Using a targeted metabolomic approach we investigated the effects of low seawater pH on energy metabolism in two late copepodite stages (CIV and CV) of the keystone Arctic copepod species Calanus glacialis. Exposure to decreasing seawater pH (from 8.0 to 7.0) caused increased ATP, ADP and NAD+ and decreased AMP concentrations in stage CIV, and increased ATP and phospho-L-arginine and decreased AMP concentrations in stage CV. Metabolic pathway enrichment analysis showed enrichment of the TCA cycle and a range of amino acid metabolic pathways in both stages. Concentrations of lactate, malate, fumarate and alpha-ketoglutarate (all involved in the TCA cycle) increased in stage CIV, whereas only alpha-ketoglutarate increased in stage CV. Based on the pattern of concentration changes in glucose, pyruvate, TCA cycle metabolites, and free amino acids, we hypothesise that ocean acidification will lead to a shift in energy production from carbohydrate metabolism in the glycolysis toward amino acid metabolism in the TCA cycle and oxidative phosphorylation in stage CIV. In stage CV, concentrations of most of the analysed free fatty acids increased, suggesting in particular that ocean acidification increases the metabolism of stored wax esters in this stage. Moreover, aminoacyl-tRNA biosynthesis was enriched in both stages indicating increased enzyme production to handle low pH stress. Dataset Arctic Arctic copepod Calanus glacialis Kongsfjord* Ocean acidification PANGAEA - Data Publisher for Earth & Environmental Science ENVELOPE(11.700000,11.700000,79.000000,79.000000) |
institution |
Open Polar |
collection |
PANGAEA - Data Publisher for Earth & Environmental Science |
op_collection_id |
ftpangaea |
language |
English |
topic |
Alkalinity total standard deviation Animalia Aragonite saturation state Arctic Arthropoda Bicarbonate ion Bottles or small containers/Aquaria (<20 L) Calanus glacialis Calcite saturation state Calculated using seacarb after Nisumaa et al. (2010) Calculated using seacarb after Orr et al. (2018) Carbon inorganic dissolved Carbonate ion Carbonate system computation flag Carbon dioxide Coast and continental shelf EXP Experiment Fugacity of carbon dioxide (water) at sea surface temperature (wet air) Fugacity of carbon dioxide in seawater Kongsfjord_copepod Laboratory experiment Metabolite OA-ICC Ocean Acidification International Coordination Centre Other studied parameter or process Partial pressure of carbon dioxide Partial pressure of carbon dioxide (water) at sea surface temperature (wet air) |
spellingShingle |
Alkalinity total standard deviation Animalia Aragonite saturation state Arctic Arthropoda Bicarbonate ion Bottles or small containers/Aquaria (<20 L) Calanus glacialis Calcite saturation state Calculated using seacarb after Nisumaa et al. (2010) Calculated using seacarb after Orr et al. (2018) Carbon inorganic dissolved Carbonate ion Carbonate system computation flag Carbon dioxide Coast and continental shelf EXP Experiment Fugacity of carbon dioxide (water) at sea surface temperature (wet air) Fugacity of carbon dioxide in seawater Kongsfjord_copepod Laboratory experiment Metabolite OA-ICC Ocean Acidification International Coordination Centre Other studied parameter or process Partial pressure of carbon dioxide Partial pressure of carbon dioxide (water) at sea surface temperature (wet air) Thor, Peter Vermandele, Fanny Bailey, Allison Guscelli, Ella Loubet‑Sartrou, Léa Dupont, Sam Calosi, Piero Seawater carbonate chemistry and cellular metabolism of the Arctic copepod Calanus glacialis |
topic_facet |
Alkalinity total standard deviation Animalia Aragonite saturation state Arctic Arthropoda Bicarbonate ion Bottles or small containers/Aquaria (<20 L) Calanus glacialis Calcite saturation state Calculated using seacarb after Nisumaa et al. (2010) Calculated using seacarb after Orr et al. (2018) Carbon inorganic dissolved Carbonate ion Carbonate system computation flag Carbon dioxide Coast and continental shelf EXP Experiment Fugacity of carbon dioxide (water) at sea surface temperature (wet air) Fugacity of carbon dioxide in seawater Kongsfjord_copepod Laboratory experiment Metabolite OA-ICC Ocean Acidification International Coordination Centre Other studied parameter or process Partial pressure of carbon dioxide Partial pressure of carbon dioxide (water) at sea surface temperature (wet air) |
description |
Using a targeted metabolomic approach we investigated the effects of low seawater pH on energy metabolism in two late copepodite stages (CIV and CV) of the keystone Arctic copepod species Calanus glacialis. Exposure to decreasing seawater pH (from 8.0 to 7.0) caused increased ATP, ADP and NAD+ and decreased AMP concentrations in stage CIV, and increased ATP and phospho-L-arginine and decreased AMP concentrations in stage CV. Metabolic pathway enrichment analysis showed enrichment of the TCA cycle and a range of amino acid metabolic pathways in both stages. Concentrations of lactate, malate, fumarate and alpha-ketoglutarate (all involved in the TCA cycle) increased in stage CIV, whereas only alpha-ketoglutarate increased in stage CV. Based on the pattern of concentration changes in glucose, pyruvate, TCA cycle metabolites, and free amino acids, we hypothesise that ocean acidification will lead to a shift in energy production from carbohydrate metabolism in the glycolysis toward amino acid metabolism in the TCA cycle and oxidative phosphorylation in stage CIV. In stage CV, concentrations of most of the analysed free fatty acids increased, suggesting in particular that ocean acidification increases the metabolism of stored wax esters in this stage. Moreover, aminoacyl-tRNA biosynthesis was enriched in both stages indicating increased enzyme production to handle low pH stress. |
format |
Dataset |
author |
Thor, Peter Vermandele, Fanny Bailey, Allison Guscelli, Ella Loubet‑Sartrou, Léa Dupont, Sam Calosi, Piero |
author_facet |
Thor, Peter Vermandele, Fanny Bailey, Allison Guscelli, Ella Loubet‑Sartrou, Léa Dupont, Sam Calosi, Piero |
author_sort |
Thor, Peter |
title |
Seawater carbonate chemistry and cellular metabolism of the Arctic copepod Calanus glacialis |
title_short |
Seawater carbonate chemistry and cellular metabolism of the Arctic copepod Calanus glacialis |
title_full |
Seawater carbonate chemistry and cellular metabolism of the Arctic copepod Calanus glacialis |
title_fullStr |
Seawater carbonate chemistry and cellular metabolism of the Arctic copepod Calanus glacialis |
title_full_unstemmed |
Seawater carbonate chemistry and cellular metabolism of the Arctic copepod Calanus glacialis |
title_sort |
seawater carbonate chemistry and cellular metabolism of the arctic copepod calanus glacialis |
publisher |
PANGAEA |
publishDate |
2022 |
url |
https://doi.pangaea.de/10.1594/PANGAEA.957185 https://doi.org/10.1594/PANGAEA.957185 |
op_coverage |
LATITUDE: 79.000000 * LONGITUDE: 11.700000 |
long_lat |
ENVELOPE(11.700000,11.700000,79.000000,79.000000) |
genre |
Arctic Arctic copepod Calanus glacialis Kongsfjord* Ocean acidification |
genre_facet |
Arctic Arctic copepod Calanus glacialis Kongsfjord* Ocean acidification |
op_relation |
Thor, Peter; Vermandele, Fanny; Bailey, Allison; Guscelli, Ella; Loubet‑Sartrou, Léa; Dupont, Sam; Calosi, Piero (2022): Ocean acidification causes fundamental changes in the cellular metabolism of the Arctic copepod Calanus glacialis as detected by metabolomic analysis. Scientific Reports, 12(1), 22223, https://doi.org/10.1038/s41598-022-26480-9 Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James; Gentili, Bernard; Hagens, Mathilde; Hofmann, Andreas; Mueller, Jens-Daniel; Proye, Aurélien; Rae, James; Soetaert, Karline (2022): seacarb: seawater carbonate chemistry with R. R package version 3.3.1. https://cran.r-project.org/web/packages/seacarb/index.html https://doi.pangaea.de/10.1594/PANGAEA.957185 https://doi.org/10.1594/PANGAEA.957185 |
op_rights |
CC-BY-4.0: Creative Commons Attribution 4.0 International Access constraints: unrestricted info:eu-repo/semantics/openAccess |
op_doi |
https://doi.org/10.1594/PANGAEA.95718510.1038/s41598-022-26480-9 |
_version_ |
1810293642252779520 |