Seawater carbonate chemistry and cellular metabolism of the Arctic copepod Calanus glacialis

Using a targeted metabolomic approach we investigated the effects of low seawater pH on energy metabolism in two late copepodite stages (CIV and CV) of the keystone Arctic copepod species Calanus glacialis. Exposure to decreasing seawater pH (from 8.0 to 7.0) caused increased ATP, ADP and NAD+ and d...

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Main Authors: Thor, Peter, Vermandele, Fanny, Bailey, Allison, Guscelli, Ella, Loubet‑Sartrou, Léa, Dupont, Sam, Calosi, Piero
Format: Dataset
Language:English
Published: PANGAEA 2022
Subjects:
EXP
Online Access:https://doi.pangaea.de/10.1594/PANGAEA.957185
https://doi.org/10.1594/PANGAEA.957185
id ftpangaea:oai:pangaea.de:doi:10.1594/PANGAEA.957185
record_format openpolar
spelling ftpangaea:oai:pangaea.de:doi:10.1594/PANGAEA.957185 2024-09-15T17:51:41+00:00 Seawater carbonate chemistry and cellular metabolism of the Arctic copepod Calanus glacialis Thor, Peter Vermandele, Fanny Bailey, Allison Guscelli, Ella Loubet‑Sartrou, Léa Dupont, Sam Calosi, Piero LATITUDE: 79.000000 * LONGITUDE: 11.700000 2022 text/tab-separated-values, 2720 data points https://doi.pangaea.de/10.1594/PANGAEA.957185 https://doi.org/10.1594/PANGAEA.957185 en eng PANGAEA Thor, Peter; Vermandele, Fanny; Bailey, Allison; Guscelli, Ella; Loubet‑Sartrou, Léa; Dupont, Sam; Calosi, Piero (2022): Ocean acidification causes fundamental changes in the cellular metabolism of the Arctic copepod Calanus glacialis as detected by metabolomic analysis. Scientific Reports, 12(1), 22223, https://doi.org/10.1038/s41598-022-26480-9 Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James; Gentili, Bernard; Hagens, Mathilde; Hofmann, Andreas; Mueller, Jens-Daniel; Proye, Aurélien; Rae, James; Soetaert, Karline (2022): seacarb: seawater carbonate chemistry with R. R package version 3.3.1. https://cran.r-project.org/web/packages/seacarb/index.html https://doi.pangaea.de/10.1594/PANGAEA.957185 https://doi.org/10.1594/PANGAEA.957185 CC-BY-4.0: Creative Commons Attribution 4.0 International Access constraints: unrestricted info:eu-repo/semantics/openAccess Alkalinity total standard deviation Animalia Aragonite saturation state Arctic Arthropoda Bicarbonate ion Bottles or small containers/Aquaria (<20 L) Calanus glacialis Calcite saturation state Calculated using seacarb after Nisumaa et al. (2010) Calculated using seacarb after Orr et al. (2018) Carbon inorganic dissolved Carbonate ion Carbonate system computation flag Carbon dioxide Coast and continental shelf EXP Experiment Fugacity of carbon dioxide (water) at sea surface temperature (wet air) Fugacity of carbon dioxide in seawater Kongsfjord_copepod Laboratory experiment Metabolite OA-ICC Ocean Acidification International Coordination Centre Other studied parameter or process Partial pressure of carbon dioxide Partial pressure of carbon dioxide (water) at sea surface temperature (wet air) dataset 2022 ftpangaea https://doi.org/10.1594/PANGAEA.95718510.1038/s41598-022-26480-9 2024-07-24T02:31:35Z Using a targeted metabolomic approach we investigated the effects of low seawater pH on energy metabolism in two late copepodite stages (CIV and CV) of the keystone Arctic copepod species Calanus glacialis. Exposure to decreasing seawater pH (from 8.0 to 7.0) caused increased ATP, ADP and NAD+ and decreased AMP concentrations in stage CIV, and increased ATP and phospho-L-arginine and decreased AMP concentrations in stage CV. Metabolic pathway enrichment analysis showed enrichment of the TCA cycle and a range of amino acid metabolic pathways in both stages. Concentrations of lactate, malate, fumarate and alpha-ketoglutarate (all involved in the TCA cycle) increased in stage CIV, whereas only alpha-ketoglutarate increased in stage CV. Based on the pattern of concentration changes in glucose, pyruvate, TCA cycle metabolites, and free amino acids, we hypothesise that ocean acidification will lead to a shift in energy production from carbohydrate metabolism in the glycolysis toward amino acid metabolism in the TCA cycle and oxidative phosphorylation in stage CIV. In stage CV, concentrations of most of the analysed free fatty acids increased, suggesting in particular that ocean acidification increases the metabolism of stored wax esters in this stage. Moreover, aminoacyl-tRNA biosynthesis was enriched in both stages indicating increased enzyme production to handle low pH stress. Dataset Arctic Arctic copepod Calanus glacialis Kongsfjord* Ocean acidification PANGAEA - Data Publisher for Earth & Environmental Science ENVELOPE(11.700000,11.700000,79.000000,79.000000)
institution Open Polar
collection PANGAEA - Data Publisher for Earth & Environmental Science
op_collection_id ftpangaea
language English
topic Alkalinity
total
standard deviation
Animalia
Aragonite saturation state
Arctic
Arthropoda
Bicarbonate ion
Bottles or small containers/Aquaria (<20 L)
Calanus glacialis
Calcite saturation state
Calculated using seacarb after Nisumaa et al. (2010)
Calculated using seacarb after Orr et al. (2018)
Carbon
inorganic
dissolved
Carbonate ion
Carbonate system computation flag
Carbon dioxide
Coast and continental shelf
EXP
Experiment
Fugacity of carbon dioxide (water) at sea surface temperature (wet air)
Fugacity of carbon dioxide in seawater
Kongsfjord_copepod
Laboratory experiment
Metabolite
OA-ICC
Ocean Acidification International Coordination Centre
Other studied parameter or process
Partial pressure of carbon dioxide
Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)
spellingShingle Alkalinity
total
standard deviation
Animalia
Aragonite saturation state
Arctic
Arthropoda
Bicarbonate ion
Bottles or small containers/Aquaria (<20 L)
Calanus glacialis
Calcite saturation state
Calculated using seacarb after Nisumaa et al. (2010)
Calculated using seacarb after Orr et al. (2018)
Carbon
inorganic
dissolved
Carbonate ion
Carbonate system computation flag
Carbon dioxide
Coast and continental shelf
EXP
Experiment
Fugacity of carbon dioxide (water) at sea surface temperature (wet air)
Fugacity of carbon dioxide in seawater
Kongsfjord_copepod
Laboratory experiment
Metabolite
OA-ICC
Ocean Acidification International Coordination Centre
Other studied parameter or process
Partial pressure of carbon dioxide
Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)
Thor, Peter
Vermandele, Fanny
Bailey, Allison
Guscelli, Ella
Loubet‑Sartrou, Léa
Dupont, Sam
Calosi, Piero
Seawater carbonate chemistry and cellular metabolism of the Arctic copepod Calanus glacialis
topic_facet Alkalinity
total
standard deviation
Animalia
Aragonite saturation state
Arctic
Arthropoda
Bicarbonate ion
Bottles or small containers/Aquaria (<20 L)
Calanus glacialis
Calcite saturation state
Calculated using seacarb after Nisumaa et al. (2010)
Calculated using seacarb after Orr et al. (2018)
Carbon
inorganic
dissolved
Carbonate ion
Carbonate system computation flag
Carbon dioxide
Coast and continental shelf
EXP
Experiment
Fugacity of carbon dioxide (water) at sea surface temperature (wet air)
Fugacity of carbon dioxide in seawater
Kongsfjord_copepod
Laboratory experiment
Metabolite
OA-ICC
Ocean Acidification International Coordination Centre
Other studied parameter or process
Partial pressure of carbon dioxide
Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)
description Using a targeted metabolomic approach we investigated the effects of low seawater pH on energy metabolism in two late copepodite stages (CIV and CV) of the keystone Arctic copepod species Calanus glacialis. Exposure to decreasing seawater pH (from 8.0 to 7.0) caused increased ATP, ADP and NAD+ and decreased AMP concentrations in stage CIV, and increased ATP and phospho-L-arginine and decreased AMP concentrations in stage CV. Metabolic pathway enrichment analysis showed enrichment of the TCA cycle and a range of amino acid metabolic pathways in both stages. Concentrations of lactate, malate, fumarate and alpha-ketoglutarate (all involved in the TCA cycle) increased in stage CIV, whereas only alpha-ketoglutarate increased in stage CV. Based on the pattern of concentration changes in glucose, pyruvate, TCA cycle metabolites, and free amino acids, we hypothesise that ocean acidification will lead to a shift in energy production from carbohydrate metabolism in the glycolysis toward amino acid metabolism in the TCA cycle and oxidative phosphorylation in stage CIV. In stage CV, concentrations of most of the analysed free fatty acids increased, suggesting in particular that ocean acidification increases the metabolism of stored wax esters in this stage. Moreover, aminoacyl-tRNA biosynthesis was enriched in both stages indicating increased enzyme production to handle low pH stress.
format Dataset
author Thor, Peter
Vermandele, Fanny
Bailey, Allison
Guscelli, Ella
Loubet‑Sartrou, Léa
Dupont, Sam
Calosi, Piero
author_facet Thor, Peter
Vermandele, Fanny
Bailey, Allison
Guscelli, Ella
Loubet‑Sartrou, Léa
Dupont, Sam
Calosi, Piero
author_sort Thor, Peter
title Seawater carbonate chemistry and cellular metabolism of the Arctic copepod Calanus glacialis
title_short Seawater carbonate chemistry and cellular metabolism of the Arctic copepod Calanus glacialis
title_full Seawater carbonate chemistry and cellular metabolism of the Arctic copepod Calanus glacialis
title_fullStr Seawater carbonate chemistry and cellular metabolism of the Arctic copepod Calanus glacialis
title_full_unstemmed Seawater carbonate chemistry and cellular metabolism of the Arctic copepod Calanus glacialis
title_sort seawater carbonate chemistry and cellular metabolism of the arctic copepod calanus glacialis
publisher PANGAEA
publishDate 2022
url https://doi.pangaea.de/10.1594/PANGAEA.957185
https://doi.org/10.1594/PANGAEA.957185
op_coverage LATITUDE: 79.000000 * LONGITUDE: 11.700000
long_lat ENVELOPE(11.700000,11.700000,79.000000,79.000000)
genre Arctic
Arctic copepod
Calanus glacialis
Kongsfjord*
Ocean acidification
genre_facet Arctic
Arctic copepod
Calanus glacialis
Kongsfjord*
Ocean acidification
op_relation Thor, Peter; Vermandele, Fanny; Bailey, Allison; Guscelli, Ella; Loubet‑Sartrou, Léa; Dupont, Sam; Calosi, Piero (2022): Ocean acidification causes fundamental changes in the cellular metabolism of the Arctic copepod Calanus glacialis as detected by metabolomic analysis. Scientific Reports, 12(1), 22223, https://doi.org/10.1038/s41598-022-26480-9
Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James; Gentili, Bernard; Hagens, Mathilde; Hofmann, Andreas; Mueller, Jens-Daniel; Proye, Aurélien; Rae, James; Soetaert, Karline (2022): seacarb: seawater carbonate chemistry with R. R package version 3.3.1. https://cran.r-project.org/web/packages/seacarb/index.html
https://doi.pangaea.de/10.1594/PANGAEA.957185
https://doi.org/10.1594/PANGAEA.957185
op_rights CC-BY-4.0: Creative Commons Attribution 4.0 International
Access constraints: unrestricted
info:eu-repo/semantics/openAccess
op_doi https://doi.org/10.1594/PANGAEA.95718510.1038/s41598-022-26480-9
_version_ 1810293642252779520