Seawater carbonate chemistry and the decrease of H+ concentration in the phycosphere and thickness of the pH boundary layer of marine diatoms Coscinodiscus wailesii

Surface ocean pH is declining due to anthropogenic atmospheric CO2 uptake with a global decline of ~0.3 possible by 2100. Extracellular pH influences a range of biological processes, including nutrient uptake, calcification and silicification. However, there are poor constraints on how pH levels in...

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Main Authors: Liu, Fengjie, Gledhill, Martha, Tan, Qiaoguo, Zhu, Kechen, Zhang, Qiong, Salaün, Pascal, Tagliabue, Alessandro, Zhang, Yanjun, Weiss, Dominik J, Achterberg, Eric Pieter, Korchev, Yuri
Format: Dataset
Language:English
Published: PANGAEA 2022
Subjects:
pH
Online Access:https://doi.pangaea.de/10.1594/PANGAEA.951332
https://doi.org/10.1594/PANGAEA.951332
id ftpangaea:oai:pangaea.de:doi:10.1594/PANGAEA.951332
record_format openpolar
institution Open Polar
collection PANGAEA - Data Publisher for Earth & Environmental Science
op_collection_id ftpangaea
language English
topic Acid-base regulation
Alkalinity
total
Aragonite saturation state
Bicarbonate ion
Bottles or small containers/Aquaria (<20 L)
Calcite saturation state
Calculated using seacarb after Nisumaa et al. (2010)
Carbon
inorganic
dissolved
Carbonate ion
Carbonate system computation flag
Carbon dioxide
Chromista
Coscinodiscus wailesii
Figure
Fugacity of carbon dioxide (water) at sea surface temperature (wet air)
Hydrogen ion concentration
Laboratory experiment
Laboratory strains
Not applicable
OA-ICC
Ocean Acidification International Coordination Centre
Ochrophyta
Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)
Pelagos
pH
Phytoplankton
Proton gradients
Salinity
Single species
Species
unique identification
Temperature
water
Thickness
Treatment
Type
spellingShingle Acid-base regulation
Alkalinity
total
Aragonite saturation state
Bicarbonate ion
Bottles or small containers/Aquaria (<20 L)
Calcite saturation state
Calculated using seacarb after Nisumaa et al. (2010)
Carbon
inorganic
dissolved
Carbonate ion
Carbonate system computation flag
Carbon dioxide
Chromista
Coscinodiscus wailesii
Figure
Fugacity of carbon dioxide (water) at sea surface temperature (wet air)
Hydrogen ion concentration
Laboratory experiment
Laboratory strains
Not applicable
OA-ICC
Ocean Acidification International Coordination Centre
Ochrophyta
Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)
Pelagos
pH
Phytoplankton
Proton gradients
Salinity
Single species
Species
unique identification
Temperature
water
Thickness
Treatment
Type
Liu, Fengjie
Gledhill, Martha
Tan, Qiaoguo
Zhu, Kechen
Zhang, Qiong
Salaün, Pascal
Tagliabue, Alessandro
Zhang, Yanjun
Weiss, Dominik J
Achterberg, Eric Pieter
Korchev, Yuri
Seawater carbonate chemistry and the decrease of H+ concentration in the phycosphere and thickness of the pH boundary layer of marine diatoms Coscinodiscus wailesii
topic_facet Acid-base regulation
Alkalinity
total
Aragonite saturation state
Bicarbonate ion
Bottles or small containers/Aquaria (<20 L)
Calcite saturation state
Calculated using seacarb after Nisumaa et al. (2010)
Carbon
inorganic
dissolved
Carbonate ion
Carbonate system computation flag
Carbon dioxide
Chromista
Coscinodiscus wailesii
Figure
Fugacity of carbon dioxide (water) at sea surface temperature (wet air)
Hydrogen ion concentration
Laboratory experiment
Laboratory strains
Not applicable
OA-ICC
Ocean Acidification International Coordination Centre
Ochrophyta
Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)
Pelagos
pH
Phytoplankton
Proton gradients
Salinity
Single species
Species
unique identification
Temperature
water
Thickness
Treatment
Type
description Surface ocean pH is declining due to anthropogenic atmospheric CO2 uptake with a global decline of ~0.3 possible by 2100. Extracellular pH influences a range of biological processes, including nutrient uptake, calcification and silicification. However, there are poor constraints on how pH levels in the extracellular microenvironment surrounding phytoplankton cells (the phycosphere) differ from bulk seawater. This adds uncertainty to biological impacts of environmental change. Furthermore, previous modelling work suggests that phycosphere pH of small cells is close to bulk seawater, and this has not been experimentally verified. Here we observe under 140 μmol photons/m**2/s the phycosphere pH of Chlamydomonas concordia (5 µm diameter), Emiliania huxleyi (5 µm), Coscinodiscus radiatus (50 µm) and C. wailesii (100 µm) are 0.11 ± 0.07, 0.20 ± 0.09, 0.41 ± 0.04 and 0.15 ± 0.20 (mean ± SD) higher than bulk seawater (pH 8.00), respectively. Thickness of the pH boundary layer of C. wailesii increases from 18 ± 4 to 122 ± 17 µm when bulk seawater pH decreases from 8.00 to 7.78. Phycosphere pH is regulated by photosynthesis and extracellular enzymatic transformation of bicarbonate, as well as being influenced by light intensity and seawater pH and buffering capacity. The pH change alters Fe speciation in the phycosphere, and hence Fe availability to phytoplankton is likely better predicted by the phycosphere, rather than bulk seawater. Overall, the precise quantification of chemical conditions in the phycosphere is crucial for assessing the sensitivity of marine phytoplankton to ongoing ocean acidification and Fe limitation in surface oceans.
format Dataset
author Liu, Fengjie
Gledhill, Martha
Tan, Qiaoguo
Zhu, Kechen
Zhang, Qiong
Salaün, Pascal
Tagliabue, Alessandro
Zhang, Yanjun
Weiss, Dominik J
Achterberg, Eric Pieter
Korchev, Yuri
author_facet Liu, Fengjie
Gledhill, Martha
Tan, Qiaoguo
Zhu, Kechen
Zhang, Qiong
Salaün, Pascal
Tagliabue, Alessandro
Zhang, Yanjun
Weiss, Dominik J
Achterberg, Eric Pieter
Korchev, Yuri
author_sort Liu, Fengjie
title Seawater carbonate chemistry and the decrease of H+ concentration in the phycosphere and thickness of the pH boundary layer of marine diatoms Coscinodiscus wailesii
title_short Seawater carbonate chemistry and the decrease of H+ concentration in the phycosphere and thickness of the pH boundary layer of marine diatoms Coscinodiscus wailesii
title_full Seawater carbonate chemistry and the decrease of H+ concentration in the phycosphere and thickness of the pH boundary layer of marine diatoms Coscinodiscus wailesii
title_fullStr Seawater carbonate chemistry and the decrease of H+ concentration in the phycosphere and thickness of the pH boundary layer of marine diatoms Coscinodiscus wailesii
title_full_unstemmed Seawater carbonate chemistry and the decrease of H+ concentration in the phycosphere and thickness of the pH boundary layer of marine diatoms Coscinodiscus wailesii
title_sort seawater carbonate chemistry and the decrease of h+ concentration in the phycosphere and thickness of the ph boundary layer of marine diatoms coscinodiscus wailesii
publisher PANGAEA
publishDate 2022
url https://doi.pangaea.de/10.1594/PANGAEA.951332
https://doi.org/10.1594/PANGAEA.951332
genre Ocean acidification
genre_facet Ocean acidification
op_relation Liu, Fengjie; Gledhill, Martha; Tan, Qiaoguo; Zhu, Kechen; Zhang, Qiong; Salaün, Pascal; Tagliabue, Alessandro; Zhang, Yanjun; Weiss, Dominik J; Achterberg, Eric Pieter; Korchev, Yuri (2022): Phycosphere pH of unicellular nano- and micro- phytoplankton cells and consequences for iron speciation. The ISME Journal, 16(10), 2329-2336, https://doi.org/10.1038/s41396-022-01280-1
Liu, Fengjie (2022): Data for the phycosphere pH of unicellular nano- and micro- phytoplankton cells and consequences for iron speciation. figshare, https://doi.org/10.6084/m9.figshare.19576477.v1
Raw data for the phycosphere pH of unicellular nano- and micro- phytoplankton cells and consequences for iron speciation (URI: https://download.pangaea.de/reference/116194/attachments/Phycosphere_pH_compiled_data_2022April10_F.Liu.xlsx)
Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James (2021): seacarb: seawater carbonate chemistry with R. R package version 3.2.16. https://cran.r-project.org/web/packages/seacarb/index.html
https://doi.pangaea.de/10.1594/PANGAEA.951332
https://doi.org/10.1594/PANGAEA.951332
op_rights CC-BY-4.0: Creative Commons Attribution 4.0 International
Access constraints: unrestricted
info:eu-repo/semantics/openAccess
op_rightsnorm CC-BY
op_doi https://doi.org/10.1594/PANGAEA.951332
https://doi.org/10.1038/s41396-022-01280-1
https://doi.org/10.6084/m9.figshare.19576477.v1
_version_ 1766158123906629632
spelling ftpangaea:oai:pangaea.de:doi:10.1594/PANGAEA.951332 2023-05-15T17:51:06+02:00 Seawater carbonate chemistry and the decrease of H+ concentration in the phycosphere and thickness of the pH boundary layer of marine diatoms Coscinodiscus wailesii Liu, Fengjie Gledhill, Martha Tan, Qiaoguo Zhu, Kechen Zhang, Qiong Salaün, Pascal Tagliabue, Alessandro Zhang, Yanjun Weiss, Dominik J Achterberg, Eric Pieter Korchev, Yuri 2022-11-29 text/tab-separated-values, 3286 data points https://doi.pangaea.de/10.1594/PANGAEA.951332 https://doi.org/10.1594/PANGAEA.951332 en eng PANGAEA Liu, Fengjie; Gledhill, Martha; Tan, Qiaoguo; Zhu, Kechen; Zhang, Qiong; Salaün, Pascal; Tagliabue, Alessandro; Zhang, Yanjun; Weiss, Dominik J; Achterberg, Eric Pieter; Korchev, Yuri (2022): Phycosphere pH of unicellular nano- and micro- phytoplankton cells and consequences for iron speciation. The ISME Journal, 16(10), 2329-2336, https://doi.org/10.1038/s41396-022-01280-1 Liu, Fengjie (2022): Data for the phycosphere pH of unicellular nano- and micro- phytoplankton cells and consequences for iron speciation. figshare, https://doi.org/10.6084/m9.figshare.19576477.v1 Raw data for the phycosphere pH of unicellular nano- and micro- phytoplankton cells and consequences for iron speciation (URI: https://download.pangaea.de/reference/116194/attachments/Phycosphere_pH_compiled_data_2022April10_F.Liu.xlsx) Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James (2021): seacarb: seawater carbonate chemistry with R. R package version 3.2.16. https://cran.r-project.org/web/packages/seacarb/index.html https://doi.pangaea.de/10.1594/PANGAEA.951332 https://doi.org/10.1594/PANGAEA.951332 CC-BY-4.0: Creative Commons Attribution 4.0 International Access constraints: unrestricted info:eu-repo/semantics/openAccess CC-BY Acid-base regulation Alkalinity total Aragonite saturation state Bicarbonate ion Bottles or small containers/Aquaria (<20 L) Calcite saturation state Calculated using seacarb after Nisumaa et al. (2010) Carbon inorganic dissolved Carbonate ion Carbonate system computation flag Carbon dioxide Chromista Coscinodiscus wailesii Figure Fugacity of carbon dioxide (water) at sea surface temperature (wet air) Hydrogen ion concentration Laboratory experiment Laboratory strains Not applicable OA-ICC Ocean Acidification International Coordination Centre Ochrophyta Partial pressure of carbon dioxide (water) at sea surface temperature (wet air) Pelagos pH Phytoplankton Proton gradients Salinity Single species Species unique identification Temperature water Thickness Treatment Type Dataset 2022 ftpangaea https://doi.org/10.1594/PANGAEA.951332 https://doi.org/10.1038/s41396-022-01280-1 https://doi.org/10.6084/m9.figshare.19576477.v1 2023-01-20T09:16:35Z Surface ocean pH is declining due to anthropogenic atmospheric CO2 uptake with a global decline of ~0.3 possible by 2100. Extracellular pH influences a range of biological processes, including nutrient uptake, calcification and silicification. However, there are poor constraints on how pH levels in the extracellular microenvironment surrounding phytoplankton cells (the phycosphere) differ from bulk seawater. This adds uncertainty to biological impacts of environmental change. Furthermore, previous modelling work suggests that phycosphere pH of small cells is close to bulk seawater, and this has not been experimentally verified. Here we observe under 140 μmol photons/m**2/s the phycosphere pH of Chlamydomonas concordia (5 µm diameter), Emiliania huxleyi (5 µm), Coscinodiscus radiatus (50 µm) and C. wailesii (100 µm) are 0.11 ± 0.07, 0.20 ± 0.09, 0.41 ± 0.04 and 0.15 ± 0.20 (mean ± SD) higher than bulk seawater (pH 8.00), respectively. Thickness of the pH boundary layer of C. wailesii increases from 18 ± 4 to 122 ± 17 µm when bulk seawater pH decreases from 8.00 to 7.78. Phycosphere pH is regulated by photosynthesis and extracellular enzymatic transformation of bicarbonate, as well as being influenced by light intensity and seawater pH and buffering capacity. The pH change alters Fe speciation in the phycosphere, and hence Fe availability to phytoplankton is likely better predicted by the phycosphere, rather than bulk seawater. Overall, the precise quantification of chemical conditions in the phycosphere is crucial for assessing the sensitivity of marine phytoplankton to ongoing ocean acidification and Fe limitation in surface oceans. Dataset Ocean acidification PANGAEA - Data Publisher for Earth & Environmental Science