Seawater carbonate chemistry and survival rate of F2 Dicentrarchus labrax after viral challenge
Background: Progressive CO2-induced ocean acidification (OA) impacts marine life in ways that are difficult to predict but are likely to become exacerbated over generations. Although marine fishes can balance acid–base homeostasis efficiently, indirect ionic regulation that alter neurosensory system...
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PANGAEA
2022
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Online Access: | https://doi.pangaea.de/10.1594/PANGAEA.949153 https://doi.org/10.1594/PANGAEA.949153 |
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ftpangaea:oai:pangaea.de:doi:10.1594/PANGAEA.949153 |
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openpolar |
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Open Polar |
collection |
PANGAEA - Data Publisher for Earth & Environmental Science |
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ftpangaea |
language |
English |
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Alkalinity total standard error Animalia Aragonite saturation state Bicarbonate ion Calcite saturation state Calculated using seacarb after Nisumaa et al. (2010) Carbon inorganic dissolved Carbonate ion Carbonate system computation flag Carbon dioxide Chordata Containers and aquaria (20-1000 L or < 1 m**2) Date Dicentrarchus labrax Fish dead Fugacity of carbon dioxide (water) at sea surface temperature (wet air) Gene expression (incl. proteomics) Laboratory experiment Laboratory strains Mortality Mortality/Survival Nekton Not applicable OA-ICC Ocean Acidification International Coordination Centre Other Other studied parameter or process Oxygen Partial pressure of carbon dioxide (water) at sea surface temperature (wet air) Pelagos pH Replicate Salinity Single species Species |
spellingShingle |
Alkalinity total standard error Animalia Aragonite saturation state Bicarbonate ion Calcite saturation state Calculated using seacarb after Nisumaa et al. (2010) Carbon inorganic dissolved Carbonate ion Carbonate system computation flag Carbon dioxide Chordata Containers and aquaria (20-1000 L or < 1 m**2) Date Dicentrarchus labrax Fish dead Fugacity of carbon dioxide (water) at sea surface temperature (wet air) Gene expression (incl. proteomics) Laboratory experiment Laboratory strains Mortality Mortality/Survival Nekton Not applicable OA-ICC Ocean Acidification International Coordination Centre Other Other studied parameter or process Oxygen Partial pressure of carbon dioxide (water) at sea surface temperature (wet air) Pelagos pH Replicate Salinity Single species Species Cohen‐Rengifo, Mishal Cabon, Joëlle Danion, Morgane Mazurais, David Seawater carbonate chemistry and survival rate of F2 Dicentrarchus labrax after viral challenge |
topic_facet |
Alkalinity total standard error Animalia Aragonite saturation state Bicarbonate ion Calcite saturation state Calculated using seacarb after Nisumaa et al. (2010) Carbon inorganic dissolved Carbonate ion Carbonate system computation flag Carbon dioxide Chordata Containers and aquaria (20-1000 L or < 1 m**2) Date Dicentrarchus labrax Fish dead Fugacity of carbon dioxide (water) at sea surface temperature (wet air) Gene expression (incl. proteomics) Laboratory experiment Laboratory strains Mortality Mortality/Survival Nekton Not applicable OA-ICC Ocean Acidification International Coordination Centre Other Other studied parameter or process Oxygen Partial pressure of carbon dioxide (water) at sea surface temperature (wet air) Pelagos pH Replicate Salinity Single species Species |
description |
Background: Progressive CO2-induced ocean acidification (OA) impacts marine life in ways that are difficult to predict but are likely to become exacerbated over generations. Although marine fishes can balance acid–base homeostasis efficiently, indirect ionic regulation that alter neurosensory systems can result in behavioural abnormalities. In marine invertebrates, OA can also affect immune system function, but whether this is the case in marine fishes is not fully understood. Farmed fish are highly susceptible to disease outbreak, yet strategies for overcoming such threats in the wake of OA are wanting. Here, we exposed two generations of the European sea bass (Dicentrarchus labrax) to end-of-century predicted pH levels (IPCC RCP8.5), with parents (F1) being exposed for four years and their offspring (F2) for 18 months. Our design included a transcriptomic analysis of the olfactory rosette (collected from the F2) and a viral challenge (exposing F2 to betanodavirus) where we assessed survival rates. Results: We discovered transcriptomic trade-offs in both sensory and immune systems after long-term transgenerational exposure to OA. Specifically, RNA-Seq analysis of the olfactory rosette, the peripheral olfactory organ, from 18-months-old F2 revealed extensive regulation in genes involved in ion transport and neuronal signalling, including GABAergic signalling. We also detected OA-induced up-regulation of genes associated with odour transduction, synaptic plasticity, neuron excitability and wiring and down-regulation of genes involved in energy metabolism. Furthermore, OA-exposure induced up-regulation of genes involved in innate antiviral immunity (pathogen recognition receptors and interferon-stimulated genes) in combination with down-regulation of the protein biosynthetic machinery. Consistently, OA-exposed F2 challenged with betanodavirus, which causes damage to the nervous system of marine fish, had acquired improved resistance. Conclusion: F2 exposed to long-term transgenerational OA acclimation showed ... |
format |
Dataset |
author |
Cohen‐Rengifo, Mishal Cabon, Joëlle Danion, Morgane Mazurais, David |
author_facet |
Cohen‐Rengifo, Mishal Cabon, Joëlle Danion, Morgane Mazurais, David |
author_sort |
Cohen‐Rengifo, Mishal |
title |
Seawater carbonate chemistry and survival rate of F2 Dicentrarchus labrax after viral challenge |
title_short |
Seawater carbonate chemistry and survival rate of F2 Dicentrarchus labrax after viral challenge |
title_full |
Seawater carbonate chemistry and survival rate of F2 Dicentrarchus labrax after viral challenge |
title_fullStr |
Seawater carbonate chemistry and survival rate of F2 Dicentrarchus labrax after viral challenge |
title_full_unstemmed |
Seawater carbonate chemistry and survival rate of F2 Dicentrarchus labrax after viral challenge |
title_sort |
seawater carbonate chemistry and survival rate of f2 dicentrarchus labrax after viral challenge |
publisher |
PANGAEA |
publishDate |
2022 |
url |
https://doi.pangaea.de/10.1594/PANGAEA.949153 https://doi.org/10.1594/PANGAEA.949153 |
genre |
Ocean acidification |
genre_facet |
Ocean acidification |
op_relation |
Cohen‐Rengifo, Mishal; Danion, Morgane; Gonzalez, Anne‑Alicia; Bégout, Marie‑Laure; Cormier, Alexandre; Noël, Cyril; Cabon, Joëlle; Vitré, Thomas; Mark, Felix Christopher; Mazurais, David (2022): The extensive transgenerational transcriptomic effects of ocean acidification on the olfactory epithelium of a marine fish are associated with a better viral resistance. BMC Genomics, 23(1), 448, https://doi.org/10.1186/s12864-022-08647-w RNA-seq of D. labrax olfactory rosette - Environmental acidificaton (pH 7.6). National Library of Medicine, https://www.ncbi.nlm.nih.gov/sra/?term=SRR15222852 Cohen‐Rengifo, Mishal; Mouchel, Olivier; Collet, Sophie; Cominassi, Louise; Howald, Sarah; Crespel, Amélie; Cabon, Cabon; Danion, Morgane; Mazurais, David (2022): Partial raw data: sea water carbonate system after years of transgenerational exposure to ocean acidification in the European Sea Bass Dicentrarchus labrax. SEANOE, https://doi.org/10.17882/87395 Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James (2021): seacarb: seawater carbonate chemistry with R. R package version 3.2.16. https://cran.r-project.org/web/packages/seacarb/index.html https://doi.pangaea.de/10.1594/PANGAEA.949153 https://doi.org/10.1594/PANGAEA.949153 |
op_rights |
CC-BY-4.0: Creative Commons Attribution 4.0 International Access constraints: unrestricted info:eu-repo/semantics/openAccess |
op_rightsnorm |
CC-BY |
op_doi |
https://doi.org/10.1594/PANGAEA.949153 https://doi.org/10.1186/s12864-022-08647-w https://doi.org/10.17882/87395 |
_version_ |
1766158375474692096 |
spelling |
ftpangaea:oai:pangaea.de:doi:10.1594/PANGAEA.949153 2023-05-15T17:51:16+02:00 Seawater carbonate chemistry and survival rate of F2 Dicentrarchus labrax after viral challenge Cohen‐Rengifo, Mishal Cabon, Joëlle Danion, Morgane Mazurais, David 2022-09-28 text/tab-separated-values, 8603 data points https://doi.pangaea.de/10.1594/PANGAEA.949153 https://doi.org/10.1594/PANGAEA.949153 en eng PANGAEA Cohen‐Rengifo, Mishal; Danion, Morgane; Gonzalez, Anne‑Alicia; Bégout, Marie‑Laure; Cormier, Alexandre; Noël, Cyril; Cabon, Joëlle; Vitré, Thomas; Mark, Felix Christopher; Mazurais, David (2022): The extensive transgenerational transcriptomic effects of ocean acidification on the olfactory epithelium of a marine fish are associated with a better viral resistance. BMC Genomics, 23(1), 448, https://doi.org/10.1186/s12864-022-08647-w RNA-seq of D. labrax olfactory rosette - Environmental acidificaton (pH 7.6). National Library of Medicine, https://www.ncbi.nlm.nih.gov/sra/?term=SRR15222852 Cohen‐Rengifo, Mishal; Mouchel, Olivier; Collet, Sophie; Cominassi, Louise; Howald, Sarah; Crespel, Amélie; Cabon, Cabon; Danion, Morgane; Mazurais, David (2022): Partial raw data: sea water carbonate system after years of transgenerational exposure to ocean acidification in the European Sea Bass Dicentrarchus labrax. SEANOE, https://doi.org/10.17882/87395 Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James (2021): seacarb: seawater carbonate chemistry with R. R package version 3.2.16. https://cran.r-project.org/web/packages/seacarb/index.html https://doi.pangaea.de/10.1594/PANGAEA.949153 https://doi.org/10.1594/PANGAEA.949153 CC-BY-4.0: Creative Commons Attribution 4.0 International Access constraints: unrestricted info:eu-repo/semantics/openAccess CC-BY Alkalinity total standard error Animalia Aragonite saturation state Bicarbonate ion Calcite saturation state Calculated using seacarb after Nisumaa et al. (2010) Carbon inorganic dissolved Carbonate ion Carbonate system computation flag Carbon dioxide Chordata Containers and aquaria (20-1000 L or < 1 m**2) Date Dicentrarchus labrax Fish dead Fugacity of carbon dioxide (water) at sea surface temperature (wet air) Gene expression (incl. proteomics) Laboratory experiment Laboratory strains Mortality Mortality/Survival Nekton Not applicable OA-ICC Ocean Acidification International Coordination Centre Other Other studied parameter or process Oxygen Partial pressure of carbon dioxide (water) at sea surface temperature (wet air) Pelagos pH Replicate Salinity Single species Species Dataset 2022 ftpangaea https://doi.org/10.1594/PANGAEA.949153 https://doi.org/10.1186/s12864-022-08647-w https://doi.org/10.17882/87395 2023-01-20T09:16:25Z Background: Progressive CO2-induced ocean acidification (OA) impacts marine life in ways that are difficult to predict but are likely to become exacerbated over generations. Although marine fishes can balance acid–base homeostasis efficiently, indirect ionic regulation that alter neurosensory systems can result in behavioural abnormalities. In marine invertebrates, OA can also affect immune system function, but whether this is the case in marine fishes is not fully understood. Farmed fish are highly susceptible to disease outbreak, yet strategies for overcoming such threats in the wake of OA are wanting. Here, we exposed two generations of the European sea bass (Dicentrarchus labrax) to end-of-century predicted pH levels (IPCC RCP8.5), with parents (F1) being exposed for four years and their offspring (F2) for 18 months. Our design included a transcriptomic analysis of the olfactory rosette (collected from the F2) and a viral challenge (exposing F2 to betanodavirus) where we assessed survival rates. Results: We discovered transcriptomic trade-offs in both sensory and immune systems after long-term transgenerational exposure to OA. Specifically, RNA-Seq analysis of the olfactory rosette, the peripheral olfactory organ, from 18-months-old F2 revealed extensive regulation in genes involved in ion transport and neuronal signalling, including GABAergic signalling. We also detected OA-induced up-regulation of genes associated with odour transduction, synaptic plasticity, neuron excitability and wiring and down-regulation of genes involved in energy metabolism. Furthermore, OA-exposure induced up-regulation of genes involved in innate antiviral immunity (pathogen recognition receptors and interferon-stimulated genes) in combination with down-regulation of the protein biosynthetic machinery. Consistently, OA-exposed F2 challenged with betanodavirus, which causes damage to the nervous system of marine fish, had acquired improved resistance. Conclusion: F2 exposed to long-term transgenerational OA acclimation showed ... Dataset Ocean acidification PANGAEA - Data Publisher for Earth & Environmental Science |