Seawater carbonate chemistry and allele frequencygene, expression plasticity, genetic diversity and egg production rate of marine copepod

Adaptive evolution and phenotypic plasticity will fuel resilience in the geologically unprecedented warming and acidification of the earth's oceans, however, we have much to learn about the interactions and costs of these mechanisms of resilience. Here, using 20 generations of experimental evol...

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Main Authors: Brennan, Reid S, deMayo, James A, Dam, Hans G, Finiguerra, Michael B, Baumann, Hannes, Pespeni, Melissa H
Format: Dataset
Language:English
Published: PANGAEA 2022
Subjects:
pH
Online Access:https://doi.pangaea.de/10.1594/PANGAEA.946063
https://doi.org/10.1594/PANGAEA.946063
id ftpangaea:oai:pangaea.de:doi:10.1594/PANGAEA.946063
record_format openpolar
spelling ftpangaea:oai:pangaea.de:doi:10.1594/PANGAEA.946063 2024-09-15T18:24:23+00:00 Seawater carbonate chemistry and allele frequencygene, expression plasticity, genetic diversity and egg production rate of marine copepod Brennan, Reid S deMayo, James A Dam, Hans G Finiguerra, Michael B Baumann, Hannes Pespeni, Melissa H LATITUDE: 41.320725 * LONGITUDE: -72.001643 * DATE/TIME START: 2016-06-01T00:00:00 * DATE/TIME END: 2016-06-30T00:00:00 2022 text/tab-separated-values, 30685 data points https://doi.pangaea.de/10.1594/PANGAEA.946063 https://doi.org/10.1594/PANGAEA.946063 en eng PANGAEA Brennan, Reid S; deMayo, James A; Dam, Hans G; Finiguerra, Michael B; Baumann, Hannes; Pespeni, Melissa H (2022): Loss of transcriptional plasticity but sustained adaptive capacity after adaptation to global change conditions in a marine copepod. Nature Communications, 13(1), https://doi.org/10.1038/s41467-022-28742-6 Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James (2021): seacarb: seawater carbonate chemistry with R. R package version 3.2.16. https://cran.r-project.org/web/packages/seacarb/index.html https://doi.pangaea.de/10.1594/PANGAEA.946063 https://doi.org/10.1594/PANGAEA.946063 CC-BY-4.0: Creative Commons Attribution 4.0 International Access constraints: unrestricted info:eu-repo/semantics/openAccess Acartia tonsa Alkalinity total Animalia Aragonite saturation state Arthropoda Bicarbonate ion Bottles or small containers/Aquaria (<20 L) Calcite saturation state Calculated using seacarb after Nisumaa et al. (2010) Carbon inorganic dissolved Carbonate ion Carbonate system computation flag Carbon dioxide Coast and continental shelf Counts Development Egg production rate per female Eggs hatched unhatched Esker_Point_Beach Figure Fugacity of carbon dioxide (water) at sea surface temperature (wet air) Gene expression (incl. proteomics) Generation Group Hatching frequency Identification Laboratory experiment Mortality/Survival North Atlantic Nucleotide diversity OA-ICC Ocean Acidification International Coordination Centre Other Partial pressure of carbon dioxide (water) at sea surface temperature (wet air) Pelagos pH Phytoplankton biomass as carbon Principal component 1 Principal component 2 Proportion of survival Replicate Reproduction Reproductive rate dataset 2022 ftpangaea https://doi.org/10.1594/PANGAEA.94606310.1038/s41467-022-28742-6 2024-07-24T02:31:34Z Adaptive evolution and phenotypic plasticity will fuel resilience in the geologically unprecedented warming and acidification of the earth's oceans, however, we have much to learn about the interactions and costs of these mechanisms of resilience. Here, using 20 generations of experimental evolution followed by three generations of reciprocal transplants, we investigated the relationship between adaptation and plasticity in the marine copepod, Acartia tonsa, in future global change conditions (high temperature and high CO2). We found parallel adaptation to global change conditions in genes related to stress response, gene expression regulation, actin regulation, developmental processes, and energy production. However, reciprocal transplantation showed that adaptation resulted in a loss of transcriptional plasticity, reduced fecundity, and reduced population growth when global change-adapted animals were returned to ambient conditions or reared in low food conditions. However, after three successive transplant generations, global change-adapted animals were able to match the ambient-adaptive transcriptional profile. Concurrent changes in allele frequencies and erosion of nucleotide diversity suggest that this recovery occurred via adaptation back to ancestral conditions. These results demonstrate that while plasticity facilitated initial survival in global change conditions, it eroded after 20 generations as populations adapted, limiting resilience to new stressors and previously benign environments. Dataset North Atlantic Ocean acidification PANGAEA - Data Publisher for Earth & Environmental Science ENVELOPE(-72.001643,-72.001643,41.320725,41.320725)
institution Open Polar
collection PANGAEA - Data Publisher for Earth & Environmental Science
op_collection_id ftpangaea
language English
topic Acartia tonsa
Alkalinity
total
Animalia
Aragonite saturation state
Arthropoda
Bicarbonate ion
Bottles or small containers/Aquaria (<20 L)
Calcite saturation state
Calculated using seacarb after Nisumaa et al. (2010)
Carbon
inorganic
dissolved
Carbonate ion
Carbonate system computation flag
Carbon dioxide
Coast and continental shelf
Counts
Development
Egg production rate per female
Eggs
hatched
unhatched
Esker_Point_Beach
Figure
Fugacity of carbon dioxide (water) at sea surface temperature (wet air)
Gene expression (incl. proteomics)
Generation
Group
Hatching frequency
Identification
Laboratory experiment
Mortality/Survival
North Atlantic
Nucleotide diversity
OA-ICC
Ocean Acidification International Coordination Centre
Other
Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)
Pelagos
pH
Phytoplankton
biomass as carbon
Principal component 1
Principal component 2
Proportion of survival
Replicate
Reproduction
Reproductive rate
spellingShingle Acartia tonsa
Alkalinity
total
Animalia
Aragonite saturation state
Arthropoda
Bicarbonate ion
Bottles or small containers/Aquaria (<20 L)
Calcite saturation state
Calculated using seacarb after Nisumaa et al. (2010)
Carbon
inorganic
dissolved
Carbonate ion
Carbonate system computation flag
Carbon dioxide
Coast and continental shelf
Counts
Development
Egg production rate per female
Eggs
hatched
unhatched
Esker_Point_Beach
Figure
Fugacity of carbon dioxide (water) at sea surface temperature (wet air)
Gene expression (incl. proteomics)
Generation
Group
Hatching frequency
Identification
Laboratory experiment
Mortality/Survival
North Atlantic
Nucleotide diversity
OA-ICC
Ocean Acidification International Coordination Centre
Other
Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)
Pelagos
pH
Phytoplankton
biomass as carbon
Principal component 1
Principal component 2
Proportion of survival
Replicate
Reproduction
Reproductive rate
Brennan, Reid S
deMayo, James A
Dam, Hans G
Finiguerra, Michael B
Baumann, Hannes
Pespeni, Melissa H
Seawater carbonate chemistry and allele frequencygene, expression plasticity, genetic diversity and egg production rate of marine copepod
topic_facet Acartia tonsa
Alkalinity
total
Animalia
Aragonite saturation state
Arthropoda
Bicarbonate ion
Bottles or small containers/Aquaria (<20 L)
Calcite saturation state
Calculated using seacarb after Nisumaa et al. (2010)
Carbon
inorganic
dissolved
Carbonate ion
Carbonate system computation flag
Carbon dioxide
Coast and continental shelf
Counts
Development
Egg production rate per female
Eggs
hatched
unhatched
Esker_Point_Beach
Figure
Fugacity of carbon dioxide (water) at sea surface temperature (wet air)
Gene expression (incl. proteomics)
Generation
Group
Hatching frequency
Identification
Laboratory experiment
Mortality/Survival
North Atlantic
Nucleotide diversity
OA-ICC
Ocean Acidification International Coordination Centre
Other
Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)
Pelagos
pH
Phytoplankton
biomass as carbon
Principal component 1
Principal component 2
Proportion of survival
Replicate
Reproduction
Reproductive rate
description Adaptive evolution and phenotypic plasticity will fuel resilience in the geologically unprecedented warming and acidification of the earth's oceans, however, we have much to learn about the interactions and costs of these mechanisms of resilience. Here, using 20 generations of experimental evolution followed by three generations of reciprocal transplants, we investigated the relationship between adaptation and plasticity in the marine copepod, Acartia tonsa, in future global change conditions (high temperature and high CO2). We found parallel adaptation to global change conditions in genes related to stress response, gene expression regulation, actin regulation, developmental processes, and energy production. However, reciprocal transplantation showed that adaptation resulted in a loss of transcriptional plasticity, reduced fecundity, and reduced population growth when global change-adapted animals were returned to ambient conditions or reared in low food conditions. However, after three successive transplant generations, global change-adapted animals were able to match the ambient-adaptive transcriptional profile. Concurrent changes in allele frequencies and erosion of nucleotide diversity suggest that this recovery occurred via adaptation back to ancestral conditions. These results demonstrate that while plasticity facilitated initial survival in global change conditions, it eroded after 20 generations as populations adapted, limiting resilience to new stressors and previously benign environments.
format Dataset
author Brennan, Reid S
deMayo, James A
Dam, Hans G
Finiguerra, Michael B
Baumann, Hannes
Pespeni, Melissa H
author_facet Brennan, Reid S
deMayo, James A
Dam, Hans G
Finiguerra, Michael B
Baumann, Hannes
Pespeni, Melissa H
author_sort Brennan, Reid S
title Seawater carbonate chemistry and allele frequencygene, expression plasticity, genetic diversity and egg production rate of marine copepod
title_short Seawater carbonate chemistry and allele frequencygene, expression plasticity, genetic diversity and egg production rate of marine copepod
title_full Seawater carbonate chemistry and allele frequencygene, expression plasticity, genetic diversity and egg production rate of marine copepod
title_fullStr Seawater carbonate chemistry and allele frequencygene, expression plasticity, genetic diversity and egg production rate of marine copepod
title_full_unstemmed Seawater carbonate chemistry and allele frequencygene, expression plasticity, genetic diversity and egg production rate of marine copepod
title_sort seawater carbonate chemistry and allele frequencygene, expression plasticity, genetic diversity and egg production rate of marine copepod
publisher PANGAEA
publishDate 2022
url https://doi.pangaea.de/10.1594/PANGAEA.946063
https://doi.org/10.1594/PANGAEA.946063
op_coverage LATITUDE: 41.320725 * LONGITUDE: -72.001643 * DATE/TIME START: 2016-06-01T00:00:00 * DATE/TIME END: 2016-06-30T00:00:00
long_lat ENVELOPE(-72.001643,-72.001643,41.320725,41.320725)
genre North Atlantic
Ocean acidification
genre_facet North Atlantic
Ocean acidification
op_relation Brennan, Reid S; deMayo, James A; Dam, Hans G; Finiguerra, Michael B; Baumann, Hannes; Pespeni, Melissa H (2022): Loss of transcriptional plasticity but sustained adaptive capacity after adaptation to global change conditions in a marine copepod. Nature Communications, 13(1), https://doi.org/10.1038/s41467-022-28742-6
Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James (2021): seacarb: seawater carbonate chemistry with R. R package version 3.2.16. https://cran.r-project.org/web/packages/seacarb/index.html
https://doi.pangaea.de/10.1594/PANGAEA.946063
https://doi.org/10.1594/PANGAEA.946063
op_rights CC-BY-4.0: Creative Commons Attribution 4.0 International
Access constraints: unrestricted
info:eu-repo/semantics/openAccess
op_doi https://doi.org/10.1594/PANGAEA.94606310.1038/s41467-022-28742-6
_version_ 1810464720520478720