Seawater carbonate chemistry and sequencing information of all biological samples and weight of 5 month old biological samples
Knowledge of adaptive potential is crucial to predicting the impacts of ocean acidification (OA) on marine organisms. In the spiny damselfish, Acanthochromis polyacanthus, individual variation in behavioural tolerance to elevated pCO2 has been observed and is associated with offspring gene expressio...
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ftpangaea:oai:pangaea.de:doi:10.1594/PANGAEA.944220 2024-09-15T18:28:04+00:00 Seawater carbonate chemistry and sequencing information of all biological samples and weight of 5 month old biological samples Monroe, Alison A Schunter, Celia Welch, Megan J Munday, Philip L Ravasi, Timothy 2021 text/tab-separated-values, 4772 data points https://doi.pangaea.de/10.1594/PANGAEA.944220 https://doi.org/10.1594/PANGAEA.944220 en eng PANGAEA Monroe, Alison A; Schunter, Celia; Welch, Megan J; Munday, Philip L; Ravasi, Timothy (2021): Molecular basis of parental contributions to the behavioural tolerance of elevated pCO2 in a coral reef fish. Proceedings of the Royal Society B-Biological Sciences, 288(1964), https://doi.org/10.1098/rspb.2021.1931 Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James (2021): seacarb: seawater carbonate chemistry with R. R package version 3.2.16. https://cran.r-project.org/web/packages/seacarb/index.html Ravasi, Timothy: Differentially expressed genes between all conditions compared to control, within parental pairs. https://download.pangaea.de/reference/113027/attachments/rspb20211931_si_002.xlsx https://doi.pangaea.de/10.1594/PANGAEA.944220 https://doi.org/10.1594/PANGAEA.944220 CC-BY-4.0: Creative Commons Attribution 4.0 International Access constraints: unrestricted info:eu-repo/semantics/openAccess Acanthochromis polyacanthus Alkalinity total standard deviation Animalia Aragonite saturation state Bicarbonate ion Calcite saturation state Calculated using CO2SYS Calculated using seacarb after Nisumaa et al. (2010) Carbon inorganic dissolved Carbonate ion Carbonate system computation flag Carbon dioxide Chordata Coast and continental shelf Containers and aquaria (20-1000 L or < 1 m**2) Fugacity of carbon dioxide (water) at sea surface temperature (wet air) Gene expression (incl. proteomics) Growth/Morphology Identification Laboratory experiment Mass Nekton OA-ICC Ocean Acidification International Coordination Centre Partial pressure of carbon dioxide Partial pressure of carbon dioxide (water) at sea surface temperature (wet air) Pelagos pH Potentiometric Potentiometric titration Reads Salinity Sample ID Single species South Pacific Species unique identification unique identification (Semantic URI) dataset 2021 ftpangaea https://doi.org/10.1594/PANGAEA.94422010.1098/rspb.2021.1931 2024-07-24T02:31:34Z Knowledge of adaptive potential is crucial to predicting the impacts of ocean acidification (OA) on marine organisms. In the spiny damselfish, Acanthochromis polyacanthus, individual variation in behavioural tolerance to elevated pCO2 has been observed and is associated with offspring gene expression patterns in the brain. However, the maternal and paternal contributions of this variation are unknown. To investigate parental influence of behavioural pCO2 tolerance, we crossed pCO2-tolerant fathers with pCO2-sensitive mothers and vice versa, reared their offspring at control and elevated pCO2 levels, and compared the juveniles' brain transcriptional programme. We identified a large influence of parental phenotype on expression patterns of offspring, irrespective of environmental conditions. Circadian rhythm genes, associated with a tolerant parental phenotype, were uniquely expressed in tolerant mother offspring, while tolerant fathers had a greater role in expression of genes associated with histone binding. Expression changes in genes associated with neural plasticity were identified in both offspring types: the maternal line had a greater effect on genes related to neuron growth while paternal influence impacted the expression of synaptic development genes. Our results confirm cellular mechanisms involved in responses to varying lengths of OA exposure, while highlighting the parental phenotype's influence on offspring molecular phenotype. Dataset Ocean acidification PANGAEA - Data Publisher for Earth & Environmental Science |
institution |
Open Polar |
collection |
PANGAEA - Data Publisher for Earth & Environmental Science |
op_collection_id |
ftpangaea |
language |
English |
topic |
Acanthochromis polyacanthus Alkalinity total standard deviation Animalia Aragonite saturation state Bicarbonate ion Calcite saturation state Calculated using CO2SYS Calculated using seacarb after Nisumaa et al. (2010) Carbon inorganic dissolved Carbonate ion Carbonate system computation flag Carbon dioxide Chordata Coast and continental shelf Containers and aquaria (20-1000 L or < 1 m**2) Fugacity of carbon dioxide (water) at sea surface temperature (wet air) Gene expression (incl. proteomics) Growth/Morphology Identification Laboratory experiment Mass Nekton OA-ICC Ocean Acidification International Coordination Centre Partial pressure of carbon dioxide Partial pressure of carbon dioxide (water) at sea surface temperature (wet air) Pelagos pH Potentiometric Potentiometric titration Reads Salinity Sample ID Single species South Pacific Species unique identification unique identification (Semantic URI) |
spellingShingle |
Acanthochromis polyacanthus Alkalinity total standard deviation Animalia Aragonite saturation state Bicarbonate ion Calcite saturation state Calculated using CO2SYS Calculated using seacarb after Nisumaa et al. (2010) Carbon inorganic dissolved Carbonate ion Carbonate system computation flag Carbon dioxide Chordata Coast and continental shelf Containers and aquaria (20-1000 L or < 1 m**2) Fugacity of carbon dioxide (water) at sea surface temperature (wet air) Gene expression (incl. proteomics) Growth/Morphology Identification Laboratory experiment Mass Nekton OA-ICC Ocean Acidification International Coordination Centre Partial pressure of carbon dioxide Partial pressure of carbon dioxide (water) at sea surface temperature (wet air) Pelagos pH Potentiometric Potentiometric titration Reads Salinity Sample ID Single species South Pacific Species unique identification unique identification (Semantic URI) Monroe, Alison A Schunter, Celia Welch, Megan J Munday, Philip L Ravasi, Timothy Seawater carbonate chemistry and sequencing information of all biological samples and weight of 5 month old biological samples |
topic_facet |
Acanthochromis polyacanthus Alkalinity total standard deviation Animalia Aragonite saturation state Bicarbonate ion Calcite saturation state Calculated using CO2SYS Calculated using seacarb after Nisumaa et al. (2010) Carbon inorganic dissolved Carbonate ion Carbonate system computation flag Carbon dioxide Chordata Coast and continental shelf Containers and aquaria (20-1000 L or < 1 m**2) Fugacity of carbon dioxide (water) at sea surface temperature (wet air) Gene expression (incl. proteomics) Growth/Morphology Identification Laboratory experiment Mass Nekton OA-ICC Ocean Acidification International Coordination Centre Partial pressure of carbon dioxide Partial pressure of carbon dioxide (water) at sea surface temperature (wet air) Pelagos pH Potentiometric Potentiometric titration Reads Salinity Sample ID Single species South Pacific Species unique identification unique identification (Semantic URI) |
description |
Knowledge of adaptive potential is crucial to predicting the impacts of ocean acidification (OA) on marine organisms. In the spiny damselfish, Acanthochromis polyacanthus, individual variation in behavioural tolerance to elevated pCO2 has been observed and is associated with offspring gene expression patterns in the brain. However, the maternal and paternal contributions of this variation are unknown. To investigate parental influence of behavioural pCO2 tolerance, we crossed pCO2-tolerant fathers with pCO2-sensitive mothers and vice versa, reared their offspring at control and elevated pCO2 levels, and compared the juveniles' brain transcriptional programme. We identified a large influence of parental phenotype on expression patterns of offspring, irrespective of environmental conditions. Circadian rhythm genes, associated with a tolerant parental phenotype, were uniquely expressed in tolerant mother offspring, while tolerant fathers had a greater role in expression of genes associated with histone binding. Expression changes in genes associated with neural plasticity were identified in both offspring types: the maternal line had a greater effect on genes related to neuron growth while paternal influence impacted the expression of synaptic development genes. Our results confirm cellular mechanisms involved in responses to varying lengths of OA exposure, while highlighting the parental phenotype's influence on offspring molecular phenotype. |
format |
Dataset |
author |
Monroe, Alison A Schunter, Celia Welch, Megan J Munday, Philip L Ravasi, Timothy |
author_facet |
Monroe, Alison A Schunter, Celia Welch, Megan J Munday, Philip L Ravasi, Timothy |
author_sort |
Monroe, Alison A |
title |
Seawater carbonate chemistry and sequencing information of all biological samples and weight of 5 month old biological samples |
title_short |
Seawater carbonate chemistry and sequencing information of all biological samples and weight of 5 month old biological samples |
title_full |
Seawater carbonate chemistry and sequencing information of all biological samples and weight of 5 month old biological samples |
title_fullStr |
Seawater carbonate chemistry and sequencing information of all biological samples and weight of 5 month old biological samples |
title_full_unstemmed |
Seawater carbonate chemistry and sequencing information of all biological samples and weight of 5 month old biological samples |
title_sort |
seawater carbonate chemistry and sequencing information of all biological samples and weight of 5 month old biological samples |
publisher |
PANGAEA |
publishDate |
2021 |
url |
https://doi.pangaea.de/10.1594/PANGAEA.944220 https://doi.org/10.1594/PANGAEA.944220 |
genre |
Ocean acidification |
genre_facet |
Ocean acidification |
op_relation |
Monroe, Alison A; Schunter, Celia; Welch, Megan J; Munday, Philip L; Ravasi, Timothy (2021): Molecular basis of parental contributions to the behavioural tolerance of elevated pCO2 in a coral reef fish. Proceedings of the Royal Society B-Biological Sciences, 288(1964), https://doi.org/10.1098/rspb.2021.1931 Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James (2021): seacarb: seawater carbonate chemistry with R. R package version 3.2.16. https://cran.r-project.org/web/packages/seacarb/index.html Ravasi, Timothy: Differentially expressed genes between all conditions compared to control, within parental pairs. https://download.pangaea.de/reference/113027/attachments/rspb20211931_si_002.xlsx https://doi.pangaea.de/10.1594/PANGAEA.944220 https://doi.org/10.1594/PANGAEA.944220 |
op_rights |
CC-BY-4.0: Creative Commons Attribution 4.0 International Access constraints: unrestricted info:eu-repo/semantics/openAccess |
op_doi |
https://doi.org/10.1594/PANGAEA.94422010.1098/rspb.2021.1931 |
_version_ |
1810469382033244160 |