Seawater carbonate chemistry and sequencing information of all biological samples and weight of 5 month old biological samples

Knowledge of adaptive potential is crucial to predicting the impacts of ocean acidification (OA) on marine organisms. In the spiny damselfish, Acanthochromis polyacanthus, individual variation in behavioural tolerance to elevated pCO2 has been observed and is associated with offspring gene expressio...

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Main Authors: Monroe, Alison A, Schunter, Celia, Welch, Megan J, Munday, Philip L, Ravasi, Timothy
Format: Dataset
Language:English
Published: PANGAEA 2021
Subjects:
pH
Online Access:https://doi.pangaea.de/10.1594/PANGAEA.944220
https://doi.org/10.1594/PANGAEA.944220
id ftpangaea:oai:pangaea.de:doi:10.1594/PANGAEA.944220
record_format openpolar
spelling ftpangaea:oai:pangaea.de:doi:10.1594/PANGAEA.944220 2024-09-15T18:28:04+00:00 Seawater carbonate chemistry and sequencing information of all biological samples and weight of 5 month old biological samples Monroe, Alison A Schunter, Celia Welch, Megan J Munday, Philip L Ravasi, Timothy 2021 text/tab-separated-values, 4772 data points https://doi.pangaea.de/10.1594/PANGAEA.944220 https://doi.org/10.1594/PANGAEA.944220 en eng PANGAEA Monroe, Alison A; Schunter, Celia; Welch, Megan J; Munday, Philip L; Ravasi, Timothy (2021): Molecular basis of parental contributions to the behavioural tolerance of elevated pCO2 in a coral reef fish. Proceedings of the Royal Society B-Biological Sciences, 288(1964), https://doi.org/10.1098/rspb.2021.1931 Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James (2021): seacarb: seawater carbonate chemistry with R. R package version 3.2.16. https://cran.r-project.org/web/packages/seacarb/index.html Ravasi, Timothy: Differentially expressed genes between all conditions compared to control, within parental pairs. https://download.pangaea.de/reference/113027/attachments/rspb20211931_si_002.xlsx https://doi.pangaea.de/10.1594/PANGAEA.944220 https://doi.org/10.1594/PANGAEA.944220 CC-BY-4.0: Creative Commons Attribution 4.0 International Access constraints: unrestricted info:eu-repo/semantics/openAccess Acanthochromis polyacanthus Alkalinity total standard deviation Animalia Aragonite saturation state Bicarbonate ion Calcite saturation state Calculated using CO2SYS Calculated using seacarb after Nisumaa et al. (2010) Carbon inorganic dissolved Carbonate ion Carbonate system computation flag Carbon dioxide Chordata Coast and continental shelf Containers and aquaria (20-1000 L or < 1 m**2) Fugacity of carbon dioxide (water) at sea surface temperature (wet air) Gene expression (incl. proteomics) Growth/Morphology Identification Laboratory experiment Mass Nekton OA-ICC Ocean Acidification International Coordination Centre Partial pressure of carbon dioxide Partial pressure of carbon dioxide (water) at sea surface temperature (wet air) Pelagos pH Potentiometric Potentiometric titration Reads Salinity Sample ID Single species South Pacific Species unique identification unique identification (Semantic URI) dataset 2021 ftpangaea https://doi.org/10.1594/PANGAEA.94422010.1098/rspb.2021.1931 2024-07-24T02:31:34Z Knowledge of adaptive potential is crucial to predicting the impacts of ocean acidification (OA) on marine organisms. In the spiny damselfish, Acanthochromis polyacanthus, individual variation in behavioural tolerance to elevated pCO2 has been observed and is associated with offspring gene expression patterns in the brain. However, the maternal and paternal contributions of this variation are unknown. To investigate parental influence of behavioural pCO2 tolerance, we crossed pCO2-tolerant fathers with pCO2-sensitive mothers and vice versa, reared their offspring at control and elevated pCO2 levels, and compared the juveniles' brain transcriptional programme. We identified a large influence of parental phenotype on expression patterns of offspring, irrespective of environmental conditions. Circadian rhythm genes, associated with a tolerant parental phenotype, were uniquely expressed in tolerant mother offspring, while tolerant fathers had a greater role in expression of genes associated with histone binding. Expression changes in genes associated with neural plasticity were identified in both offspring types: the maternal line had a greater effect on genes related to neuron growth while paternal influence impacted the expression of synaptic development genes. Our results confirm cellular mechanisms involved in responses to varying lengths of OA exposure, while highlighting the parental phenotype's influence on offspring molecular phenotype. Dataset Ocean acidification PANGAEA - Data Publisher for Earth & Environmental Science
institution Open Polar
collection PANGAEA - Data Publisher for Earth & Environmental Science
op_collection_id ftpangaea
language English
topic Acanthochromis polyacanthus
Alkalinity
total
standard deviation
Animalia
Aragonite saturation state
Bicarbonate ion
Calcite saturation state
Calculated using CO2SYS
Calculated using seacarb after Nisumaa et al. (2010)
Carbon
inorganic
dissolved
Carbonate ion
Carbonate system computation flag
Carbon dioxide
Chordata
Coast and continental shelf
Containers and aquaria (20-1000 L or < 1 m**2)
Fugacity of carbon dioxide (water) at sea surface temperature (wet air)
Gene expression (incl. proteomics)
Growth/Morphology
Identification
Laboratory experiment
Mass
Nekton
OA-ICC
Ocean Acidification International Coordination Centre
Partial pressure of carbon dioxide
Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)
Pelagos
pH
Potentiometric
Potentiometric titration
Reads
Salinity
Sample ID
Single species
South Pacific
Species
unique identification
unique identification (Semantic URI)
spellingShingle Acanthochromis polyacanthus
Alkalinity
total
standard deviation
Animalia
Aragonite saturation state
Bicarbonate ion
Calcite saturation state
Calculated using CO2SYS
Calculated using seacarb after Nisumaa et al. (2010)
Carbon
inorganic
dissolved
Carbonate ion
Carbonate system computation flag
Carbon dioxide
Chordata
Coast and continental shelf
Containers and aquaria (20-1000 L or < 1 m**2)
Fugacity of carbon dioxide (water) at sea surface temperature (wet air)
Gene expression (incl. proteomics)
Growth/Morphology
Identification
Laboratory experiment
Mass
Nekton
OA-ICC
Ocean Acidification International Coordination Centre
Partial pressure of carbon dioxide
Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)
Pelagos
pH
Potentiometric
Potentiometric titration
Reads
Salinity
Sample ID
Single species
South Pacific
Species
unique identification
unique identification (Semantic URI)
Monroe, Alison A
Schunter, Celia
Welch, Megan J
Munday, Philip L
Ravasi, Timothy
Seawater carbonate chemistry and sequencing information of all biological samples and weight of 5 month old biological samples
topic_facet Acanthochromis polyacanthus
Alkalinity
total
standard deviation
Animalia
Aragonite saturation state
Bicarbonate ion
Calcite saturation state
Calculated using CO2SYS
Calculated using seacarb after Nisumaa et al. (2010)
Carbon
inorganic
dissolved
Carbonate ion
Carbonate system computation flag
Carbon dioxide
Chordata
Coast and continental shelf
Containers and aquaria (20-1000 L or < 1 m**2)
Fugacity of carbon dioxide (water) at sea surface temperature (wet air)
Gene expression (incl. proteomics)
Growth/Morphology
Identification
Laboratory experiment
Mass
Nekton
OA-ICC
Ocean Acidification International Coordination Centre
Partial pressure of carbon dioxide
Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)
Pelagos
pH
Potentiometric
Potentiometric titration
Reads
Salinity
Sample ID
Single species
South Pacific
Species
unique identification
unique identification (Semantic URI)
description Knowledge of adaptive potential is crucial to predicting the impacts of ocean acidification (OA) on marine organisms. In the spiny damselfish, Acanthochromis polyacanthus, individual variation in behavioural tolerance to elevated pCO2 has been observed and is associated with offspring gene expression patterns in the brain. However, the maternal and paternal contributions of this variation are unknown. To investigate parental influence of behavioural pCO2 tolerance, we crossed pCO2-tolerant fathers with pCO2-sensitive mothers and vice versa, reared their offspring at control and elevated pCO2 levels, and compared the juveniles' brain transcriptional programme. We identified a large influence of parental phenotype on expression patterns of offspring, irrespective of environmental conditions. Circadian rhythm genes, associated with a tolerant parental phenotype, were uniquely expressed in tolerant mother offspring, while tolerant fathers had a greater role in expression of genes associated with histone binding. Expression changes in genes associated with neural plasticity were identified in both offspring types: the maternal line had a greater effect on genes related to neuron growth while paternal influence impacted the expression of synaptic development genes. Our results confirm cellular mechanisms involved in responses to varying lengths of OA exposure, while highlighting the parental phenotype's influence on offspring molecular phenotype.
format Dataset
author Monroe, Alison A
Schunter, Celia
Welch, Megan J
Munday, Philip L
Ravasi, Timothy
author_facet Monroe, Alison A
Schunter, Celia
Welch, Megan J
Munday, Philip L
Ravasi, Timothy
author_sort Monroe, Alison A
title Seawater carbonate chemistry and sequencing information of all biological samples and weight of 5 month old biological samples
title_short Seawater carbonate chemistry and sequencing information of all biological samples and weight of 5 month old biological samples
title_full Seawater carbonate chemistry and sequencing information of all biological samples and weight of 5 month old biological samples
title_fullStr Seawater carbonate chemistry and sequencing information of all biological samples and weight of 5 month old biological samples
title_full_unstemmed Seawater carbonate chemistry and sequencing information of all biological samples and weight of 5 month old biological samples
title_sort seawater carbonate chemistry and sequencing information of all biological samples and weight of 5 month old biological samples
publisher PANGAEA
publishDate 2021
url https://doi.pangaea.de/10.1594/PANGAEA.944220
https://doi.org/10.1594/PANGAEA.944220
genre Ocean acidification
genre_facet Ocean acidification
op_relation Monroe, Alison A; Schunter, Celia; Welch, Megan J; Munday, Philip L; Ravasi, Timothy (2021): Molecular basis of parental contributions to the behavioural tolerance of elevated pCO2 in a coral reef fish. Proceedings of the Royal Society B-Biological Sciences, 288(1964), https://doi.org/10.1098/rspb.2021.1931
Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James (2021): seacarb: seawater carbonate chemistry with R. R package version 3.2.16. https://cran.r-project.org/web/packages/seacarb/index.html
Ravasi, Timothy: Differentially expressed genes between all conditions compared to control, within parental pairs. https://download.pangaea.de/reference/113027/attachments/rspb20211931_si_002.xlsx
https://doi.pangaea.de/10.1594/PANGAEA.944220
https://doi.org/10.1594/PANGAEA.944220
op_rights CC-BY-4.0: Creative Commons Attribution 4.0 International
Access constraints: unrestricted
info:eu-repo/semantics/openAccess
op_doi https://doi.org/10.1594/PANGAEA.94422010.1098/rspb.2021.1931
_version_ 1810469382033244160