Seawater carbonate chemistry and bacterial diversity and immune repertoire of the demosponge, Neopetrosia compacta, and the calcareous sponge, Leucetta chagosensis
The sponge-associated microbial community contributes to the overall health and adaptive capacity of the sponge holobiont. This community is regulated by the environment and the immune system of the host. However, little is known about the effect of environmental stress on the regulation of host imm...
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Language: | English |
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PANGAEA
2021
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Online Access: | https://doi.pangaea.de/10.1594/PANGAEA.942405 https://doi.org/10.1594/PANGAEA.942405 |
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ftpangaea:oai:pangaea.de:doi:10.1594/PANGAEA.942405 |
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record_format |
openpolar |
institution |
Open Polar |
collection |
PANGAEA - Data Publisher for Earth & Environmental Science |
op_collection_id |
ftpangaea |
language |
English |
topic |
Abundance Alkalinity total Animalia Aragonite saturation state Benthic animals Benthos Bicarbonate ion Bolinao_Anda_Reef_Complex Bottles or small containers/Aquaria (<20 L) Calcite saturation state Calculated using CO2SYS Calculated using seacarb after Nisumaa et al. (2010) Carbon inorganic dissolved Carbonate ion Carbonate system computation flag Carbon dioxide Coast and continental shelf Community composition and diversity Diversity index Entire community EXP Experiment Family Figure Fold change Fugacity of carbon dioxide (water) at sea surface temperature (wet air) Gene expression Gene expression (incl. proteomics) Gene name Group Identification Immunology/Self-protection Inverse Simpson index of diversity Laboratory experiment Leucetta chagosensis Mortality/Survival Name Neopetrosia compacta North Pacific Number OA-ICC Ocean Acidification International Coordination Centre Order Partial pressure of carbon dioxide (water) at sea surface temperature (wet air) |
spellingShingle |
Abundance Alkalinity total Animalia Aragonite saturation state Benthic animals Benthos Bicarbonate ion Bolinao_Anda_Reef_Complex Bottles or small containers/Aquaria (<20 L) Calcite saturation state Calculated using CO2SYS Calculated using seacarb after Nisumaa et al. (2010) Carbon inorganic dissolved Carbonate ion Carbonate system computation flag Carbon dioxide Coast and continental shelf Community composition and diversity Diversity index Entire community EXP Experiment Family Figure Fold change Fugacity of carbon dioxide (water) at sea surface temperature (wet air) Gene expression Gene expression (incl. proteomics) Gene name Group Identification Immunology/Self-protection Inverse Simpson index of diversity Laboratory experiment Leucetta chagosensis Mortality/Survival Name Neopetrosia compacta North Pacific Number OA-ICC Ocean Acidification International Coordination Centre Order Partial pressure of carbon dioxide (water) at sea surface temperature (wet air) Posadas, Niño Baquiran, Jake Ivan P Nada, Michael Angelou L Kelly, Michelle Conaco, Cecilia Seawater carbonate chemistry and bacterial diversity and immune repertoire of the demosponge, Neopetrosia compacta, and the calcareous sponge, Leucetta chagosensis |
topic_facet |
Abundance Alkalinity total Animalia Aragonite saturation state Benthic animals Benthos Bicarbonate ion Bolinao_Anda_Reef_Complex Bottles or small containers/Aquaria (<20 L) Calcite saturation state Calculated using CO2SYS Calculated using seacarb after Nisumaa et al. (2010) Carbon inorganic dissolved Carbonate ion Carbonate system computation flag Carbon dioxide Coast and continental shelf Community composition and diversity Diversity index Entire community EXP Experiment Family Figure Fold change Fugacity of carbon dioxide (water) at sea surface temperature (wet air) Gene expression Gene expression (incl. proteomics) Gene name Group Identification Immunology/Self-protection Inverse Simpson index of diversity Laboratory experiment Leucetta chagosensis Mortality/Survival Name Neopetrosia compacta North Pacific Number OA-ICC Ocean Acidification International Coordination Centre Order Partial pressure of carbon dioxide (water) at sea surface temperature (wet air) |
description |
The sponge-associated microbial community contributes to the overall health and adaptive capacity of the sponge holobiont. This community is regulated by the environment and the immune system of the host. However, little is known about the effect of environmental stress on the regulation of host immune functions and how this may, in turn, affect sponge–microbe interactions. In this study, we compared the bacterial diversity and immune repertoire of the demosponge, Neopetrosia compacta, and the calcareous sponge, Leucetta chagosensis, under varying levels of acidification and warming stress based on climate scenarios predicted for 2100. Neopetrosia compacta harbors a diverse microbial community and possesses a rich repertoire of scavenger receptors while L. chagosensis has a less diverse microbiome and an expanded range of pattern recognition receptors and immune response-related genes. Upon exposure to RCP 8.5 conditions, the microbiome composition and host transcriptome of N. compacta remained stable, which correlated with high survival (75%). In contrast, tissue necrosis and low survival (25%) of L. chagosensis was accompanied by microbial community shifts and downregulation of host immune-related pathways. Meta-analysis of microbiome diversity and immunological repertoire across poriferan classes further highlights the importance of host–microbe interactions in predicting the fate of sponges under future ocean conditions. |
format |
Dataset |
author |
Posadas, Niño Baquiran, Jake Ivan P Nada, Michael Angelou L Kelly, Michelle Conaco, Cecilia |
author_facet |
Posadas, Niño Baquiran, Jake Ivan P Nada, Michael Angelou L Kelly, Michelle Conaco, Cecilia |
author_sort |
Posadas, Niño |
title |
Seawater carbonate chemistry and bacterial diversity and immune repertoire of the demosponge, Neopetrosia compacta, and the calcareous sponge, Leucetta chagosensis |
title_short |
Seawater carbonate chemistry and bacterial diversity and immune repertoire of the demosponge, Neopetrosia compacta, and the calcareous sponge, Leucetta chagosensis |
title_full |
Seawater carbonate chemistry and bacterial diversity and immune repertoire of the demosponge, Neopetrosia compacta, and the calcareous sponge, Leucetta chagosensis |
title_fullStr |
Seawater carbonate chemistry and bacterial diversity and immune repertoire of the demosponge, Neopetrosia compacta, and the calcareous sponge, Leucetta chagosensis |
title_full_unstemmed |
Seawater carbonate chemistry and bacterial diversity and immune repertoire of the demosponge, Neopetrosia compacta, and the calcareous sponge, Leucetta chagosensis |
title_sort |
seawater carbonate chemistry and bacterial diversity and immune repertoire of the demosponge, neopetrosia compacta, and the calcareous sponge, leucetta chagosensis |
publisher |
PANGAEA |
publishDate |
2021 |
url |
https://doi.pangaea.de/10.1594/PANGAEA.942405 https://doi.org/10.1594/PANGAEA.942405 |
op_coverage |
LATITUDE: 16.296000 * LONGITUDE: 120.014000 * DATE/TIME START: 2018-09-01T00:00:00 * DATE/TIME END: 2018-09-30T00:00:00 |
long_lat |
ENVELOPE(120.014000,120.014000,16.296000,16.296000) |
genre |
Ocean acidification |
genre_facet |
Ocean acidification |
op_relation |
Posadas, Niño; Baquiran, Jake Ivan P; Nada, Michael Angelou L; Kelly, Michelle; Conaco, Cecilia (2022): Microbiome diversity and host immune functions influence survivorship of sponge holobionts under future ocean conditions. The ISME Journal, 16(1), 58-67, https://doi.org/10.1038/s41396-021-01050-5 Posadas, Niño; Baquiran, Jake Ivan P; Nada, Michael Angelou L; Kelly, Michelle; Conaco, Cecilia (2022): Figures data [dataset]. figshare, https://doi.org/10.6084/m9.figshare.19297697.v1 Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James (2021): seacarb: seawater carbonate chemistry with R. R package version 3.2.16. https://cran.r-project.org/web/packages/seacarb/index.html https://doi.pangaea.de/10.1594/PANGAEA.942405 https://doi.org/10.1594/PANGAEA.942405 |
op_rights |
CC-BY-4.0: Creative Commons Attribution 4.0 International Access constraints: unrestricted info:eu-repo/semantics/openAccess |
op_doi |
https://doi.org/10.1594/PANGAEA.94240510.1038/s41396-021-01050-510.6084/m9.figshare.19297697.v1 |
_version_ |
1810469814163996672 |
spelling |
ftpangaea:oai:pangaea.de:doi:10.1594/PANGAEA.942405 2024-09-15T18:28:27+00:00 Seawater carbonate chemistry and bacterial diversity and immune repertoire of the demosponge, Neopetrosia compacta, and the calcareous sponge, Leucetta chagosensis Posadas, Niño Baquiran, Jake Ivan P Nada, Michael Angelou L Kelly, Michelle Conaco, Cecilia LATITUDE: 16.296000 * LONGITUDE: 120.014000 * DATE/TIME START: 2018-09-01T00:00:00 * DATE/TIME END: 2018-09-30T00:00:00 2021 text/tab-separated-values, 38509 data points https://doi.pangaea.de/10.1594/PANGAEA.942405 https://doi.org/10.1594/PANGAEA.942405 en eng PANGAEA Posadas, Niño; Baquiran, Jake Ivan P; Nada, Michael Angelou L; Kelly, Michelle; Conaco, Cecilia (2022): Microbiome diversity and host immune functions influence survivorship of sponge holobionts under future ocean conditions. The ISME Journal, 16(1), 58-67, https://doi.org/10.1038/s41396-021-01050-5 Posadas, Niño; Baquiran, Jake Ivan P; Nada, Michael Angelou L; Kelly, Michelle; Conaco, Cecilia (2022): Figures data [dataset]. figshare, https://doi.org/10.6084/m9.figshare.19297697.v1 Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James (2021): seacarb: seawater carbonate chemistry with R. R package version 3.2.16. https://cran.r-project.org/web/packages/seacarb/index.html https://doi.pangaea.de/10.1594/PANGAEA.942405 https://doi.org/10.1594/PANGAEA.942405 CC-BY-4.0: Creative Commons Attribution 4.0 International Access constraints: unrestricted info:eu-repo/semantics/openAccess Abundance Alkalinity total Animalia Aragonite saturation state Benthic animals Benthos Bicarbonate ion Bolinao_Anda_Reef_Complex Bottles or small containers/Aquaria (<20 L) Calcite saturation state Calculated using CO2SYS Calculated using seacarb after Nisumaa et al. (2010) Carbon inorganic dissolved Carbonate ion Carbonate system computation flag Carbon dioxide Coast and continental shelf Community composition and diversity Diversity index Entire community EXP Experiment Family Figure Fold change Fugacity of carbon dioxide (water) at sea surface temperature (wet air) Gene expression Gene expression (incl. proteomics) Gene name Group Identification Immunology/Self-protection Inverse Simpson index of diversity Laboratory experiment Leucetta chagosensis Mortality/Survival Name Neopetrosia compacta North Pacific Number OA-ICC Ocean Acidification International Coordination Centre Order Partial pressure of carbon dioxide (water) at sea surface temperature (wet air) dataset 2021 ftpangaea https://doi.org/10.1594/PANGAEA.94240510.1038/s41396-021-01050-510.6084/m9.figshare.19297697.v1 2024-07-24T02:31:34Z The sponge-associated microbial community contributes to the overall health and adaptive capacity of the sponge holobiont. This community is regulated by the environment and the immune system of the host. However, little is known about the effect of environmental stress on the regulation of host immune functions and how this may, in turn, affect sponge–microbe interactions. In this study, we compared the bacterial diversity and immune repertoire of the demosponge, Neopetrosia compacta, and the calcareous sponge, Leucetta chagosensis, under varying levels of acidification and warming stress based on climate scenarios predicted for 2100. Neopetrosia compacta harbors a diverse microbial community and possesses a rich repertoire of scavenger receptors while L. chagosensis has a less diverse microbiome and an expanded range of pattern recognition receptors and immune response-related genes. Upon exposure to RCP 8.5 conditions, the microbiome composition and host transcriptome of N. compacta remained stable, which correlated with high survival (75%). In contrast, tissue necrosis and low survival (25%) of L. chagosensis was accompanied by microbial community shifts and downregulation of host immune-related pathways. Meta-analysis of microbiome diversity and immunological repertoire across poriferan classes further highlights the importance of host–microbe interactions in predicting the fate of sponges under future ocean conditions. Dataset Ocean acidification PANGAEA - Data Publisher for Earth & Environmental Science ENVELOPE(120.014000,120.014000,16.296000,16.296000) |