Seawater carbonate chemistry and bacterial diversity and immune repertoire of the demosponge, Neopetrosia compacta, and the calcareous sponge, Leucetta chagosensis

The sponge-associated microbial community contributes to the overall health and adaptive capacity of the sponge holobiont. This community is regulated by the environment and the immune system of the host. However, little is known about the effect of environmental stress on the regulation of host imm...

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Main Authors: Posadas, Niño, Baquiran, Jake Ivan P, Nada, Michael Angelou L, Kelly, Michelle, Conaco, Cecilia
Format: Dataset
Language:English
Published: PANGAEA 2021
Subjects:
EXP
Online Access:https://doi.pangaea.de/10.1594/PANGAEA.942405
https://doi.org/10.1594/PANGAEA.942405
id ftpangaea:oai:pangaea.de:doi:10.1594/PANGAEA.942405
record_format openpolar
institution Open Polar
collection PANGAEA - Data Publisher for Earth & Environmental Science
op_collection_id ftpangaea
language English
topic Abundance
Alkalinity
total
Animalia
Aragonite saturation state
Benthic animals
Benthos
Bicarbonate ion
Bolinao_Anda_Reef_Complex
Bottles or small containers/Aquaria (<20 L)
Calcite saturation state
Calculated using CO2SYS
Calculated using seacarb after Nisumaa et al. (2010)
Carbon
inorganic
dissolved
Carbonate ion
Carbonate system computation flag
Carbon dioxide
Coast and continental shelf
Community composition and diversity
Diversity index
Entire community
EXP
Experiment
Family
Figure
Fold change
Fugacity of carbon dioxide (water) at sea surface temperature (wet air)
Gene expression
Gene expression (incl. proteomics)
Gene name
Group
Identification
Immunology/Self-protection
Inverse Simpson index of diversity
Laboratory experiment
Leucetta chagosensis
Mortality/Survival
Name
Neopetrosia compacta
North Pacific
Number
OA-ICC
Ocean Acidification International Coordination Centre
Order
Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)
spellingShingle Abundance
Alkalinity
total
Animalia
Aragonite saturation state
Benthic animals
Benthos
Bicarbonate ion
Bolinao_Anda_Reef_Complex
Bottles or small containers/Aquaria (<20 L)
Calcite saturation state
Calculated using CO2SYS
Calculated using seacarb after Nisumaa et al. (2010)
Carbon
inorganic
dissolved
Carbonate ion
Carbonate system computation flag
Carbon dioxide
Coast and continental shelf
Community composition and diversity
Diversity index
Entire community
EXP
Experiment
Family
Figure
Fold change
Fugacity of carbon dioxide (water) at sea surface temperature (wet air)
Gene expression
Gene expression (incl. proteomics)
Gene name
Group
Identification
Immunology/Self-protection
Inverse Simpson index of diversity
Laboratory experiment
Leucetta chagosensis
Mortality/Survival
Name
Neopetrosia compacta
North Pacific
Number
OA-ICC
Ocean Acidification International Coordination Centre
Order
Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)
Posadas, Niño
Baquiran, Jake Ivan P
Nada, Michael Angelou L
Kelly, Michelle
Conaco, Cecilia
Seawater carbonate chemistry and bacterial diversity and immune repertoire of the demosponge, Neopetrosia compacta, and the calcareous sponge, Leucetta chagosensis
topic_facet Abundance
Alkalinity
total
Animalia
Aragonite saturation state
Benthic animals
Benthos
Bicarbonate ion
Bolinao_Anda_Reef_Complex
Bottles or small containers/Aquaria (<20 L)
Calcite saturation state
Calculated using CO2SYS
Calculated using seacarb after Nisumaa et al. (2010)
Carbon
inorganic
dissolved
Carbonate ion
Carbonate system computation flag
Carbon dioxide
Coast and continental shelf
Community composition and diversity
Diversity index
Entire community
EXP
Experiment
Family
Figure
Fold change
Fugacity of carbon dioxide (water) at sea surface temperature (wet air)
Gene expression
Gene expression (incl. proteomics)
Gene name
Group
Identification
Immunology/Self-protection
Inverse Simpson index of diversity
Laboratory experiment
Leucetta chagosensis
Mortality/Survival
Name
Neopetrosia compacta
North Pacific
Number
OA-ICC
Ocean Acidification International Coordination Centre
Order
Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)
description The sponge-associated microbial community contributes to the overall health and adaptive capacity of the sponge holobiont. This community is regulated by the environment and the immune system of the host. However, little is known about the effect of environmental stress on the regulation of host immune functions and how this may, in turn, affect sponge–microbe interactions. In this study, we compared the bacterial diversity and immune repertoire of the demosponge, Neopetrosia compacta, and the calcareous sponge, Leucetta chagosensis, under varying levels of acidification and warming stress based on climate scenarios predicted for 2100. Neopetrosia compacta harbors a diverse microbial community and possesses a rich repertoire of scavenger receptors while L. chagosensis has a less diverse microbiome and an expanded range of pattern recognition receptors and immune response-related genes. Upon exposure to RCP 8.5 conditions, the microbiome composition and host transcriptome of N. compacta remained stable, which correlated with high survival (75%). In contrast, tissue necrosis and low survival (25%) of L. chagosensis was accompanied by microbial community shifts and downregulation of host immune-related pathways. Meta-analysis of microbiome diversity and immunological repertoire across poriferan classes further highlights the importance of host–microbe interactions in predicting the fate of sponges under future ocean conditions.
format Dataset
author Posadas, Niño
Baquiran, Jake Ivan P
Nada, Michael Angelou L
Kelly, Michelle
Conaco, Cecilia
author_facet Posadas, Niño
Baquiran, Jake Ivan P
Nada, Michael Angelou L
Kelly, Michelle
Conaco, Cecilia
author_sort Posadas, Niño
title Seawater carbonate chemistry and bacterial diversity and immune repertoire of the demosponge, Neopetrosia compacta, and the calcareous sponge, Leucetta chagosensis
title_short Seawater carbonate chemistry and bacterial diversity and immune repertoire of the demosponge, Neopetrosia compacta, and the calcareous sponge, Leucetta chagosensis
title_full Seawater carbonate chemistry and bacterial diversity and immune repertoire of the demosponge, Neopetrosia compacta, and the calcareous sponge, Leucetta chagosensis
title_fullStr Seawater carbonate chemistry and bacterial diversity and immune repertoire of the demosponge, Neopetrosia compacta, and the calcareous sponge, Leucetta chagosensis
title_full_unstemmed Seawater carbonate chemistry and bacterial diversity and immune repertoire of the demosponge, Neopetrosia compacta, and the calcareous sponge, Leucetta chagosensis
title_sort seawater carbonate chemistry and bacterial diversity and immune repertoire of the demosponge, neopetrosia compacta, and the calcareous sponge, leucetta chagosensis
publisher PANGAEA
publishDate 2021
url https://doi.pangaea.de/10.1594/PANGAEA.942405
https://doi.org/10.1594/PANGAEA.942405
op_coverage LATITUDE: 16.296000 * LONGITUDE: 120.014000 * DATE/TIME START: 2018-09-01T00:00:00 * DATE/TIME END: 2018-09-30T00:00:00
long_lat ENVELOPE(120.014000,120.014000,16.296000,16.296000)
genre Ocean acidification
genre_facet Ocean acidification
op_relation Posadas, Niño; Baquiran, Jake Ivan P; Nada, Michael Angelou L; Kelly, Michelle; Conaco, Cecilia (2022): Microbiome diversity and host immune functions influence survivorship of sponge holobionts under future ocean conditions. The ISME Journal, 16(1), 58-67, https://doi.org/10.1038/s41396-021-01050-5
Posadas, Niño; Baquiran, Jake Ivan P; Nada, Michael Angelou L; Kelly, Michelle; Conaco, Cecilia (2022): Figures data [dataset]. figshare, https://doi.org/10.6084/m9.figshare.19297697.v1
Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James (2021): seacarb: seawater carbonate chemistry with R. R package version 3.2.16. https://cran.r-project.org/web/packages/seacarb/index.html
https://doi.pangaea.de/10.1594/PANGAEA.942405
https://doi.org/10.1594/PANGAEA.942405
op_rights CC-BY-4.0: Creative Commons Attribution 4.0 International
Access constraints: unrestricted
info:eu-repo/semantics/openAccess
op_doi https://doi.org/10.1594/PANGAEA.94240510.1038/s41396-021-01050-510.6084/m9.figshare.19297697.v1
_version_ 1810469814163996672
spelling ftpangaea:oai:pangaea.de:doi:10.1594/PANGAEA.942405 2024-09-15T18:28:27+00:00 Seawater carbonate chemistry and bacterial diversity and immune repertoire of the demosponge, Neopetrosia compacta, and the calcareous sponge, Leucetta chagosensis Posadas, Niño Baquiran, Jake Ivan P Nada, Michael Angelou L Kelly, Michelle Conaco, Cecilia LATITUDE: 16.296000 * LONGITUDE: 120.014000 * DATE/TIME START: 2018-09-01T00:00:00 * DATE/TIME END: 2018-09-30T00:00:00 2021 text/tab-separated-values, 38509 data points https://doi.pangaea.de/10.1594/PANGAEA.942405 https://doi.org/10.1594/PANGAEA.942405 en eng PANGAEA Posadas, Niño; Baquiran, Jake Ivan P; Nada, Michael Angelou L; Kelly, Michelle; Conaco, Cecilia (2022): Microbiome diversity and host immune functions influence survivorship of sponge holobionts under future ocean conditions. The ISME Journal, 16(1), 58-67, https://doi.org/10.1038/s41396-021-01050-5 Posadas, Niño; Baquiran, Jake Ivan P; Nada, Michael Angelou L; Kelly, Michelle; Conaco, Cecilia (2022): Figures data [dataset]. figshare, https://doi.org/10.6084/m9.figshare.19297697.v1 Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James (2021): seacarb: seawater carbonate chemistry with R. R package version 3.2.16. https://cran.r-project.org/web/packages/seacarb/index.html https://doi.pangaea.de/10.1594/PANGAEA.942405 https://doi.org/10.1594/PANGAEA.942405 CC-BY-4.0: Creative Commons Attribution 4.0 International Access constraints: unrestricted info:eu-repo/semantics/openAccess Abundance Alkalinity total Animalia Aragonite saturation state Benthic animals Benthos Bicarbonate ion Bolinao_Anda_Reef_Complex Bottles or small containers/Aquaria (<20 L) Calcite saturation state Calculated using CO2SYS Calculated using seacarb after Nisumaa et al. (2010) Carbon inorganic dissolved Carbonate ion Carbonate system computation flag Carbon dioxide Coast and continental shelf Community composition and diversity Diversity index Entire community EXP Experiment Family Figure Fold change Fugacity of carbon dioxide (water) at sea surface temperature (wet air) Gene expression Gene expression (incl. proteomics) Gene name Group Identification Immunology/Self-protection Inverse Simpson index of diversity Laboratory experiment Leucetta chagosensis Mortality/Survival Name Neopetrosia compacta North Pacific Number OA-ICC Ocean Acidification International Coordination Centre Order Partial pressure of carbon dioxide (water) at sea surface temperature (wet air) dataset 2021 ftpangaea https://doi.org/10.1594/PANGAEA.94240510.1038/s41396-021-01050-510.6084/m9.figshare.19297697.v1 2024-07-24T02:31:34Z The sponge-associated microbial community contributes to the overall health and adaptive capacity of the sponge holobiont. This community is regulated by the environment and the immune system of the host. However, little is known about the effect of environmental stress on the regulation of host immune functions and how this may, in turn, affect sponge–microbe interactions. In this study, we compared the bacterial diversity and immune repertoire of the demosponge, Neopetrosia compacta, and the calcareous sponge, Leucetta chagosensis, under varying levels of acidification and warming stress based on climate scenarios predicted for 2100. Neopetrosia compacta harbors a diverse microbial community and possesses a rich repertoire of scavenger receptors while L. chagosensis has a less diverse microbiome and an expanded range of pattern recognition receptors and immune response-related genes. Upon exposure to RCP 8.5 conditions, the microbiome composition and host transcriptome of N. compacta remained stable, which correlated with high survival (75%). In contrast, tissue necrosis and low survival (25%) of L. chagosensis was accompanied by microbial community shifts and downregulation of host immune-related pathways. Meta-analysis of microbiome diversity and immunological repertoire across poriferan classes further highlights the importance of host–microbe interactions in predicting the fate of sponges under future ocean conditions. Dataset Ocean acidification PANGAEA - Data Publisher for Earth & Environmental Science ENVELOPE(120.014000,120.014000,16.296000,16.296000)