Seawater carbonate chemistry and otop2l expression of sea urchins (Stongylocentrotus purpuratus)

Otopetrins comprise a family of proton-selective channels that are critically important for the mineralization of otoliths and statoconia in vertebrates but whose underlying cellular mechanisms remain largely unknown. Here, we demonstrate that otopetrins are critically involved in the calcification...

Full description

Bibliographic Details
Main Authors: Chang, William Weijen, Matt, Ann-Sophie, Schewe, Marcus, Musinszki, Marianne, Grüssel, Sandra, Brandenburg, Jonas, Garfield, David, Bleich, Markus, Baukrowitz, Thomas, Hu, Marian Y
Format: Dataset
Language:English
Published: PANGAEA 2021
Subjects:
pH
Online Access:https://doi.pangaea.de/10.1594/PANGAEA.939436
https://doi.org/10.1594/PANGAEA.939436
id ftpangaea:oai:pangaea.de:doi:10.1594/PANGAEA.939436
record_format openpolar
spelling ftpangaea:oai:pangaea.de:doi:10.1594/PANGAEA.939436 2024-09-15T18:24:25+00:00 Seawater carbonate chemistry and otop2l expression of sea urchins (Stongylocentrotus purpuratus) Chang, William Weijen Matt, Ann-Sophie Schewe, Marcus Musinszki, Marianne Grüssel, Sandra Brandenburg, Jonas Garfield, David Bleich, Markus Baukrowitz, Thomas Hu, Marian Y 2021 text/tab-separated-values, 1125 data points https://doi.pangaea.de/10.1594/PANGAEA.939436 https://doi.org/10.1594/PANGAEA.939436 en eng PANGAEA Chang, William Weijen; Matt, Ann-Sophie; Schewe, Marcus; Musinszki, Marianne; Grüssel, Sandra; Brandenburg, Jonas; Garfield, David; Bleich, Markus; Baukrowitz, Thomas; Hu, Marian Y (2021): An otopetrin family proton channel promotes cellular acid efflux critical for biomineralization in a marine calcifier. Proceedings of the National Academy of Sciences, 118(30), e2101378118, https://doi.org/10.1073/pnas.2101378118 Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James (2021): seacarb: seawater carbonate chemistry with R. R package version 3.2.16. https://cran.r-project.org/web/packages/seacarb/index.html https://doi.pangaea.de/10.1594/PANGAEA.939436 https://doi.org/10.1594/PANGAEA.939436 CC-BY-4.0: Creative Commons Attribution 4.0 International Access constraints: unrestricted info:eu-repo/semantics/openAccess Alkalinity total Animalia Aragonite saturation state Bicarbonate ion Bottles or small containers/Aquaria (<20 L) Calcite saturation state Calculated using seacarb after Nisumaa et al. (2010) Carbon inorganic dissolved Carbonate ion Carbonate system computation flag Carbon dioxide Coast and continental shelf Echinodermata Fugacity of carbon dioxide (water) at sea surface temperature (wet air) Gene expression Gene expression (incl. proteomics) Laboratory experiment North Atlantic Partial pressure of carbon dioxide (water) at sea surface temperature (wet air) Pelagos pH Registration number of species Replicate Salinity Single species Species Strongylocentrotus purpuratus Temperate Temperature water Time in days Treatment Type Uniform resource locator/link to reference Zooplankton dataset 2021 ftpangaea https://doi.org/10.1594/PANGAEA.93943610.1073/pnas.2101378118 2024-07-24T02:31:34Z Otopetrins comprise a family of proton-selective channels that are critically important for the mineralization of otoliths and statoconia in vertebrates but whose underlying cellular mechanisms remain largely unknown. Here, we demonstrate that otopetrins are critically involved in the calcification process by providing an exit route for protons liberated by the formation of CaCO3. Using the sea urchin larva, we examined the otopetrin ortholog otop2l, which is exclusively expressed in the calcifying primary mesenchymal cells (PMCs) that generate the calcitic larval skeleton. otop2l expression is stimulated during skeletogenesis, and knockdown of otop2l impairs spicule formation. Intracellular pH measurements demonstrated Zn2+-sensitive H+ fluxes in PMCs that regulate intracellular pH in a Na+/HCO3−-independent manner, while Otop2l knockdown reduced membrane proton permeability. Furthermore, Otop2l displays unique features, including strong activation by high extracellular pH (>8.0) and check-valve–like outwardly rectifying H+ flux properties, making it into a cellular proton extrusion machine adapted to oceanic living conditions. Our results provide evidence that otopetrin family proton channels are a central component of the cellular pH regulatory machinery in biomineralizing cells. Their ubiquitous occurrence in calcifying systems across the animal kingdom suggest a conserved physiological function by mediating pH at the site of mineralization. This important role of otopetrin family proton channels has strong implications for our view on the cellular mechanisms of biomineralization and their response to changes in oceanic pH. Dataset North Atlantic PANGAEA - Data Publisher for Earth & Environmental Science
institution Open Polar
collection PANGAEA - Data Publisher for Earth & Environmental Science
op_collection_id ftpangaea
language English
topic Alkalinity
total
Animalia
Aragonite saturation state
Bicarbonate ion
Bottles or small containers/Aquaria (<20 L)
Calcite saturation state
Calculated using seacarb after Nisumaa et al. (2010)
Carbon
inorganic
dissolved
Carbonate ion
Carbonate system computation flag
Carbon dioxide
Coast and continental shelf
Echinodermata
Fugacity of carbon dioxide (water) at sea surface temperature (wet air)
Gene expression
Gene expression (incl. proteomics)
Laboratory experiment
North Atlantic
Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)
Pelagos
pH
Registration number of species
Replicate
Salinity
Single species
Species
Strongylocentrotus purpuratus
Temperate
Temperature
water
Time in days
Treatment
Type
Uniform resource locator/link to reference
Zooplankton
spellingShingle Alkalinity
total
Animalia
Aragonite saturation state
Bicarbonate ion
Bottles or small containers/Aquaria (<20 L)
Calcite saturation state
Calculated using seacarb after Nisumaa et al. (2010)
Carbon
inorganic
dissolved
Carbonate ion
Carbonate system computation flag
Carbon dioxide
Coast and continental shelf
Echinodermata
Fugacity of carbon dioxide (water) at sea surface temperature (wet air)
Gene expression
Gene expression (incl. proteomics)
Laboratory experiment
North Atlantic
Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)
Pelagos
pH
Registration number of species
Replicate
Salinity
Single species
Species
Strongylocentrotus purpuratus
Temperate
Temperature
water
Time in days
Treatment
Type
Uniform resource locator/link to reference
Zooplankton
Chang, William Weijen
Matt, Ann-Sophie
Schewe, Marcus
Musinszki, Marianne
Grüssel, Sandra
Brandenburg, Jonas
Garfield, David
Bleich, Markus
Baukrowitz, Thomas
Hu, Marian Y
Seawater carbonate chemistry and otop2l expression of sea urchins (Stongylocentrotus purpuratus)
topic_facet Alkalinity
total
Animalia
Aragonite saturation state
Bicarbonate ion
Bottles or small containers/Aquaria (<20 L)
Calcite saturation state
Calculated using seacarb after Nisumaa et al. (2010)
Carbon
inorganic
dissolved
Carbonate ion
Carbonate system computation flag
Carbon dioxide
Coast and continental shelf
Echinodermata
Fugacity of carbon dioxide (water) at sea surface temperature (wet air)
Gene expression
Gene expression (incl. proteomics)
Laboratory experiment
North Atlantic
Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)
Pelagos
pH
Registration number of species
Replicate
Salinity
Single species
Species
Strongylocentrotus purpuratus
Temperate
Temperature
water
Time in days
Treatment
Type
Uniform resource locator/link to reference
Zooplankton
description Otopetrins comprise a family of proton-selective channels that are critically important for the mineralization of otoliths and statoconia in vertebrates but whose underlying cellular mechanisms remain largely unknown. Here, we demonstrate that otopetrins are critically involved in the calcification process by providing an exit route for protons liberated by the formation of CaCO3. Using the sea urchin larva, we examined the otopetrin ortholog otop2l, which is exclusively expressed in the calcifying primary mesenchymal cells (PMCs) that generate the calcitic larval skeleton. otop2l expression is stimulated during skeletogenesis, and knockdown of otop2l impairs spicule formation. Intracellular pH measurements demonstrated Zn2+-sensitive H+ fluxes in PMCs that regulate intracellular pH in a Na+/HCO3−-independent manner, while Otop2l knockdown reduced membrane proton permeability. Furthermore, Otop2l displays unique features, including strong activation by high extracellular pH (>8.0) and check-valve–like outwardly rectifying H+ flux properties, making it into a cellular proton extrusion machine adapted to oceanic living conditions. Our results provide evidence that otopetrin family proton channels are a central component of the cellular pH regulatory machinery in biomineralizing cells. Their ubiquitous occurrence in calcifying systems across the animal kingdom suggest a conserved physiological function by mediating pH at the site of mineralization. This important role of otopetrin family proton channels has strong implications for our view on the cellular mechanisms of biomineralization and their response to changes in oceanic pH.
format Dataset
author Chang, William Weijen
Matt, Ann-Sophie
Schewe, Marcus
Musinszki, Marianne
Grüssel, Sandra
Brandenburg, Jonas
Garfield, David
Bleich, Markus
Baukrowitz, Thomas
Hu, Marian Y
author_facet Chang, William Weijen
Matt, Ann-Sophie
Schewe, Marcus
Musinszki, Marianne
Grüssel, Sandra
Brandenburg, Jonas
Garfield, David
Bleich, Markus
Baukrowitz, Thomas
Hu, Marian Y
author_sort Chang, William Weijen
title Seawater carbonate chemistry and otop2l expression of sea urchins (Stongylocentrotus purpuratus)
title_short Seawater carbonate chemistry and otop2l expression of sea urchins (Stongylocentrotus purpuratus)
title_full Seawater carbonate chemistry and otop2l expression of sea urchins (Stongylocentrotus purpuratus)
title_fullStr Seawater carbonate chemistry and otop2l expression of sea urchins (Stongylocentrotus purpuratus)
title_full_unstemmed Seawater carbonate chemistry and otop2l expression of sea urchins (Stongylocentrotus purpuratus)
title_sort seawater carbonate chemistry and otop2l expression of sea urchins (stongylocentrotus purpuratus)
publisher PANGAEA
publishDate 2021
url https://doi.pangaea.de/10.1594/PANGAEA.939436
https://doi.org/10.1594/PANGAEA.939436
genre North Atlantic
genre_facet North Atlantic
op_relation Chang, William Weijen; Matt, Ann-Sophie; Schewe, Marcus; Musinszki, Marianne; Grüssel, Sandra; Brandenburg, Jonas; Garfield, David; Bleich, Markus; Baukrowitz, Thomas; Hu, Marian Y (2021): An otopetrin family proton channel promotes cellular acid efflux critical for biomineralization in a marine calcifier. Proceedings of the National Academy of Sciences, 118(30), e2101378118, https://doi.org/10.1073/pnas.2101378118
Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James (2021): seacarb: seawater carbonate chemistry with R. R package version 3.2.16. https://cran.r-project.org/web/packages/seacarb/index.html
https://doi.pangaea.de/10.1594/PANGAEA.939436
https://doi.org/10.1594/PANGAEA.939436
op_rights CC-BY-4.0: Creative Commons Attribution 4.0 International
Access constraints: unrestricted
info:eu-repo/semantics/openAccess
op_doi https://doi.org/10.1594/PANGAEA.93943610.1073/pnas.2101378118
_version_ 1810464771240099840