Seawater carbonate chemistry and proportion of transcriptome changing, coral protein concentration, respiration rates, algal photosynthetic parameters

The integrity of coral reefs worldwide is jeopardized by ocean acidification (OA). Most studies conducted so far have focused on the vulnerability to OA of corals inhabiting shallow reefs, while nothing is currently known about the response of mesophotic scleractinian corals. In this study we assess...

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Bibliographic Details
Main Authors: Scucchia, Federica, Malik, Assaf, Putnam, H M, Mass, Tali
Format: Dataset
Language:English
Published: PANGAEA 2021
Subjects:
EXP
pH
Online Access:https://doi.pangaea.de/10.1594/PANGAEA.936541
https://doi.org/10.1594/PANGAEA.936541
id ftpangaea:oai:pangaea.de:doi:10.1594/PANGAEA.936541
record_format openpolar
institution Open Polar
collection PANGAEA - Data Publisher for Earth & Environmental Science
op_collection_id ftpangaea
language English
topic Alkalinity
total
Animalia
Aragonite saturation state
Benthic animals
Benthos
Bicarbonate ion
Biomass/Abundance/Elemental composition
Calcite saturation state
Calculated using seacarb after Nisumaa et al. (2010)
Carbon
inorganic
dissolved
Carbonate ion
Carbonate system computation flag
Carbon dioxide
Chlorophyll a
per protein
Chlorophyll a per cell
Class
Coast and continental shelf
Comment
Containers and aquaria (20-1000 L or < 1 m**2)
Depth
description
Electron transport rate
relative
EXP
Experiment
Experiment duration
Frequency
Fugacity of carbon dioxide (water) at sea surface temperature (wet air)
Gene expression (incl. proteomics)
Gulf_of_Eilat
Irradiance
Laboratory experiment
Maximum quantum yield of photosystem II
OA-ICC
Ocean Acidification International Coordination Centre
Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)
pH
Potentiometric
Potentiometric titration
Primary production/Photosynthesis
Protein per surface area
Proteins
Red Sea
Registration number of species
Replicate
Respiration rate
spellingShingle Alkalinity
total
Animalia
Aragonite saturation state
Benthic animals
Benthos
Bicarbonate ion
Biomass/Abundance/Elemental composition
Calcite saturation state
Calculated using seacarb after Nisumaa et al. (2010)
Carbon
inorganic
dissolved
Carbonate ion
Carbonate system computation flag
Carbon dioxide
Chlorophyll a
per protein
Chlorophyll a per cell
Class
Coast and continental shelf
Comment
Containers and aquaria (20-1000 L or < 1 m**2)
Depth
description
Electron transport rate
relative
EXP
Experiment
Experiment duration
Frequency
Fugacity of carbon dioxide (water) at sea surface temperature (wet air)
Gene expression (incl. proteomics)
Gulf_of_Eilat
Irradiance
Laboratory experiment
Maximum quantum yield of photosystem II
OA-ICC
Ocean Acidification International Coordination Centre
Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)
pH
Potentiometric
Potentiometric titration
Primary production/Photosynthesis
Protein per surface area
Proteins
Red Sea
Registration number of species
Replicate
Respiration rate
Scucchia, Federica
Malik, Assaf
Putnam, H M
Mass, Tali
Seawater carbonate chemistry and proportion of transcriptome changing, coral protein concentration, respiration rates, algal photosynthetic parameters
topic_facet Alkalinity
total
Animalia
Aragonite saturation state
Benthic animals
Benthos
Bicarbonate ion
Biomass/Abundance/Elemental composition
Calcite saturation state
Calculated using seacarb after Nisumaa et al. (2010)
Carbon
inorganic
dissolved
Carbonate ion
Carbonate system computation flag
Carbon dioxide
Chlorophyll a
per protein
Chlorophyll a per cell
Class
Coast and continental shelf
Comment
Containers and aquaria (20-1000 L or < 1 m**2)
Depth
description
Electron transport rate
relative
EXP
Experiment
Experiment duration
Frequency
Fugacity of carbon dioxide (water) at sea surface temperature (wet air)
Gene expression (incl. proteomics)
Gulf_of_Eilat
Irradiance
Laboratory experiment
Maximum quantum yield of photosystem II
OA-ICC
Ocean Acidification International Coordination Centre
Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)
pH
Potentiometric
Potentiometric titration
Primary production/Photosynthesis
Protein per surface area
Proteins
Red Sea
Registration number of species
Replicate
Respiration rate
description The integrity of coral reefs worldwide is jeopardized by ocean acidification (OA). Most studies conducted so far have focused on the vulnerability to OA of corals inhabiting shallow reefs, while nothing is currently known about the response of mesophotic scleractinian corals. In this study we assessed the susceptibility to OA of corals, together with their algal partners, inhabiting a wide depth range. We exposed fragments of the depth generalist coral Stylophora pistillata collected from either 5 or 45 meters to simulated future OA conditions, and assessed key molecular, physiological and photosynthetic processes influenced by the lowered pH. Our comparative analysis reveals that mesophotic and shallow S. pistillata corals are genetically distinct and possess different symbiont types. Under the exposure to acidification conditions, we observed a 50% drop of metabolic rate in shallow corals, whereas mesophotic corals were able to maintain unaltered metabolic rates. Overall, our gene expression and physiological analyses show that mesophotic corals possess a greater capacity to cope with the effects of OA compared to their shallow counterparts. Such capability stems from physiological characteristics (i.e. biomass and lipids energetics), a greater capacity to regulate cellular acid-base parameters, and a higher baseline expression of cell-adhesion and extracellular matrix genes. Moreover, our gene expression analysis suggests that the enhanced symbiont photochemical efficiency under high pCO₂ levels could prevent acidosis of the host cells and it could support a greater translocation of photosynthates, increasing the energy pool available to the host. With this work, we provide new insights on the response to OA of corals living at mesophotic depths. Our investigation discloses key genetic and physiological traits underlying the potential for corals to cope with future OA conditions.
format Dataset
author Scucchia, Federica
Malik, Assaf
Putnam, H M
Mass, Tali
author_facet Scucchia, Federica
Malik, Assaf
Putnam, H M
Mass, Tali
author_sort Scucchia, Federica
title Seawater carbonate chemistry and proportion of transcriptome changing, coral protein concentration, respiration rates, algal photosynthetic parameters
title_short Seawater carbonate chemistry and proportion of transcriptome changing, coral protein concentration, respiration rates, algal photosynthetic parameters
title_full Seawater carbonate chemistry and proportion of transcriptome changing, coral protein concentration, respiration rates, algal photosynthetic parameters
title_fullStr Seawater carbonate chemistry and proportion of transcriptome changing, coral protein concentration, respiration rates, algal photosynthetic parameters
title_full_unstemmed Seawater carbonate chemistry and proportion of transcriptome changing, coral protein concentration, respiration rates, algal photosynthetic parameters
title_sort seawater carbonate chemistry and proportion of transcriptome changing, coral protein concentration, respiration rates, algal photosynthetic parameters
publisher PANGAEA
publishDate 2021
url https://doi.pangaea.de/10.1594/PANGAEA.936541
https://doi.org/10.1594/PANGAEA.936541
op_coverage LATITUDE: 29.501700 * LONGITUDE: 34.916200 * DATE/TIME START: 2020-02-01T00:00:00 * DATE/TIME END: 2020-02-29T00:00:00
long_lat ENVELOPE(34.916200,34.916200,29.501700,29.501700)
genre Ocean acidification
genre_facet Ocean acidification
op_relation Scucchia, Federica; Malik, Assaf; Putnam, H M; Mass, Tali (2021): Genetic and physiological traits conferring tolerance to ocean acidification in mesophotic corals. Global Change Biology, 27(20), 5276-5294, https://doi.org/10.1111/gcb.15812
Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James (2021): seacarb: seawater carbonate chemistry with R. R package version 3.2.16. https://cran.r-project.org/web/packages/seacarb/index.html
https://doi.pangaea.de/10.1594/PANGAEA.936541
https://doi.org/10.1594/PANGAEA.936541
op_rights CC-BY-4.0: Creative Commons Attribution 4.0 International
Access constraints: unrestricted
info:eu-repo/semantics/openAccess
op_doi https://doi.org/10.1594/PANGAEA.93654110.1111/gcb.15812
_version_ 1810469549781286912
spelling ftpangaea:oai:pangaea.de:doi:10.1594/PANGAEA.936541 2024-09-15T18:28:13+00:00 Seawater carbonate chemistry and proportion of transcriptome changing, coral protein concentration, respiration rates, algal photosynthetic parameters Scucchia, Federica Malik, Assaf Putnam, H M Mass, Tali LATITUDE: 29.501700 * LONGITUDE: 34.916200 * DATE/TIME START: 2020-02-01T00:00:00 * DATE/TIME END: 2020-02-29T00:00:00 2021 text/tab-separated-values, 28665 data points https://doi.pangaea.de/10.1594/PANGAEA.936541 https://doi.org/10.1594/PANGAEA.936541 en eng PANGAEA Scucchia, Federica; Malik, Assaf; Putnam, H M; Mass, Tali (2021): Genetic and physiological traits conferring tolerance to ocean acidification in mesophotic corals. Global Change Biology, 27(20), 5276-5294, https://doi.org/10.1111/gcb.15812 Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James (2021): seacarb: seawater carbonate chemistry with R. R package version 3.2.16. https://cran.r-project.org/web/packages/seacarb/index.html https://doi.pangaea.de/10.1594/PANGAEA.936541 https://doi.org/10.1594/PANGAEA.936541 CC-BY-4.0: Creative Commons Attribution 4.0 International Access constraints: unrestricted info:eu-repo/semantics/openAccess Alkalinity total Animalia Aragonite saturation state Benthic animals Benthos Bicarbonate ion Biomass/Abundance/Elemental composition Calcite saturation state Calculated using seacarb after Nisumaa et al. (2010) Carbon inorganic dissolved Carbonate ion Carbonate system computation flag Carbon dioxide Chlorophyll a per protein Chlorophyll a per cell Class Coast and continental shelf Comment Containers and aquaria (20-1000 L or < 1 m**2) Depth description Electron transport rate relative EXP Experiment Experiment duration Frequency Fugacity of carbon dioxide (water) at sea surface temperature (wet air) Gene expression (incl. proteomics) Gulf_of_Eilat Irradiance Laboratory experiment Maximum quantum yield of photosystem II OA-ICC Ocean Acidification International Coordination Centre Partial pressure of carbon dioxide (water) at sea surface temperature (wet air) pH Potentiometric Potentiometric titration Primary production/Photosynthesis Protein per surface area Proteins Red Sea Registration number of species Replicate Respiration rate dataset 2021 ftpangaea https://doi.org/10.1594/PANGAEA.93654110.1111/gcb.15812 2024-07-24T02:31:34Z The integrity of coral reefs worldwide is jeopardized by ocean acidification (OA). Most studies conducted so far have focused on the vulnerability to OA of corals inhabiting shallow reefs, while nothing is currently known about the response of mesophotic scleractinian corals. In this study we assessed the susceptibility to OA of corals, together with their algal partners, inhabiting a wide depth range. We exposed fragments of the depth generalist coral Stylophora pistillata collected from either 5 or 45 meters to simulated future OA conditions, and assessed key molecular, physiological and photosynthetic processes influenced by the lowered pH. Our comparative analysis reveals that mesophotic and shallow S. pistillata corals are genetically distinct and possess different symbiont types. Under the exposure to acidification conditions, we observed a 50% drop of metabolic rate in shallow corals, whereas mesophotic corals were able to maintain unaltered metabolic rates. Overall, our gene expression and physiological analyses show that mesophotic corals possess a greater capacity to cope with the effects of OA compared to their shallow counterparts. Such capability stems from physiological characteristics (i.e. biomass and lipids energetics), a greater capacity to regulate cellular acid-base parameters, and a higher baseline expression of cell-adhesion and extracellular matrix genes. Moreover, our gene expression analysis suggests that the enhanced symbiont photochemical efficiency under high pCO₂ levels could prevent acidosis of the host cells and it could support a greater translocation of photosynthates, increasing the energy pool available to the host. With this work, we provide new insights on the response to OA of corals living at mesophotic depths. Our investigation discloses key genetic and physiological traits underlying the potential for corals to cope with future OA conditions. Dataset Ocean acidification PANGAEA - Data Publisher for Earth & Environmental Science ENVELOPE(34.916200,34.916200,29.501700,29.501700)