Count data of classified sequences from sedimentary ancient DNA shotgun metagenomics of core SO201-2-12KL
We applied metagenomic shotgun sequencing to a sedimentary ancient DNA (sedaDNA) record from the North Pacific (off Kamchatka) covering the last 20,000 years to trace temporal changes in ecosystem composition and food webs. This dataset contains count data before re-sampling for (1) phototrophic bac...
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Online Access: | https://doi.pangaea.de/10.1594/PANGAEA.934664 https://doi.org/10.1594/PANGAEA.934664 |
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ftpangaea:oai:pangaea.de:doi:10.1594/PANGAEA.934664 2023-05-15T16:59:12+02:00 Count data of classified sequences from sedimentary ancient DNA shotgun metagenomics of core SO201-2-12KL Zimmermann, Heike Hildegard Stoof-Leichsenring, Kathleen Rosmarie Dinkel, Viktor Harms, Lars Schulte, Luise Hütt, Marc-Thorsten Nürnberg, Dirk Tiedemann, Ralf Herzschuh, Ulrike LATITUDE: 53.992660 * LONGITUDE: 162.375830 * DATE/TIME START: 2009-09-09T04:49:00 * DATE/TIME END: 2009-09-09T05:59:00 2021-08-06 application/zip, 3 datasets https://doi.pangaea.de/10.1594/PANGAEA.934664 https://doi.org/10.1594/PANGAEA.934664 en eng PANGAEA Dullo, Wolf-Christian (2010): Documentation of sediment core SO201-2-12. IFM-GEOMAR Leibniz-Institute of Marine Sciences, Kiel University, PANGAEA, https://doi.org/10.1594/PANGAEA.737622 Zimmermann, Heike Hildegard; Stoof-Leichsenring, Kathleen Rosmarie; Harms, Lars; Schulte, Luise; Hütt, Marc-Thorsten; Nürnberg, Dirk; Tiedemann, Ralf; Herzschuh, Ulrike (2021): Count data of classified sequences from sedimentary ancient DNA shotgun metagenomics of core SO201-2-12KL. European Nucleotide Archive (ENA), insdc:PRJEB46821 Zimmermann, Heike Hildegard; Stoof-Leichsenring, Kathleen Rosmarie; Harms, Lars; Schulte, Luise; Hütt, Marc-Thorsten; Nürnberg, Dirk; Tiedemann, Ralf; Herzschuh, Ulrike (accepted): Shifts of marine food webs and carbon export with sea-ice loss inferred from ancient DNA. https://doi.pangaea.de/10.1594/PANGAEA.934664 https://doi.org/10.1594/PANGAEA.934664 CC-BY-4.0: Creative Commons Attribution 4.0 International Access constraints: unrestricted info:eu-repo/semantics/openAccess CC-BY AWI_Envi Polar Terrestrial Environmental Systems @ AWI Dataset 2021 ftpangaea https://doi.org/10.1594/PANGAEA.934664 https://doi.org/10.1594/PANGAEA.737622 2023-01-20T07:34:48Z We applied metagenomic shotgun sequencing to a sedimentary ancient DNA (sedaDNA) record from the North Pacific (off Kamchatka) covering the last 20,000 years to trace temporal changes in ecosystem composition and food webs. This dataset contains count data before re-sampling for (1) phototrophic bacterial and eukaryotic pelagic families, (2) and eukaryotic benthic families, and (3) a list of families, their grouping into habitat (pelagic/benthic) and trophic status (phototrophic/heterotrophic), the taxonomic group to which the family belongs, the resampled number of read counts used for the formal analysis, links (edges) in the pelagic network, and Spearman correlation coefficients (ρ>0.2) and Benjamini-Hochberg adjusted p-values between families and environmental variables (SSTs and IP25). Associated sequencing data, on which the taxonomic classifications are based on, can be found at the European Nucleotide Archive (ENA) under BIOPROJECT: PRJEB46821. Dataset Kamchatka PANGAEA - Data Publisher for Earth & Environmental Science Pacific ENVELOPE(162.375830,162.375830,53.992660,53.992660) |
institution |
Open Polar |
collection |
PANGAEA - Data Publisher for Earth & Environmental Science |
op_collection_id |
ftpangaea |
language |
English |
topic |
AWI_Envi Polar Terrestrial Environmental Systems @ AWI |
spellingShingle |
AWI_Envi Polar Terrestrial Environmental Systems @ AWI Zimmermann, Heike Hildegard Stoof-Leichsenring, Kathleen Rosmarie Dinkel, Viktor Harms, Lars Schulte, Luise Hütt, Marc-Thorsten Nürnberg, Dirk Tiedemann, Ralf Herzschuh, Ulrike Count data of classified sequences from sedimentary ancient DNA shotgun metagenomics of core SO201-2-12KL |
topic_facet |
AWI_Envi Polar Terrestrial Environmental Systems @ AWI |
description |
We applied metagenomic shotgun sequencing to a sedimentary ancient DNA (sedaDNA) record from the North Pacific (off Kamchatka) covering the last 20,000 years to trace temporal changes in ecosystem composition and food webs. This dataset contains count data before re-sampling for (1) phototrophic bacterial and eukaryotic pelagic families, (2) and eukaryotic benthic families, and (3) a list of families, their grouping into habitat (pelagic/benthic) and trophic status (phototrophic/heterotrophic), the taxonomic group to which the family belongs, the resampled number of read counts used for the formal analysis, links (edges) in the pelagic network, and Spearman correlation coefficients (ρ>0.2) and Benjamini-Hochberg adjusted p-values between families and environmental variables (SSTs and IP25). Associated sequencing data, on which the taxonomic classifications are based on, can be found at the European Nucleotide Archive (ENA) under BIOPROJECT: PRJEB46821. |
format |
Dataset |
author |
Zimmermann, Heike Hildegard Stoof-Leichsenring, Kathleen Rosmarie Dinkel, Viktor Harms, Lars Schulte, Luise Hütt, Marc-Thorsten Nürnberg, Dirk Tiedemann, Ralf Herzschuh, Ulrike |
author_facet |
Zimmermann, Heike Hildegard Stoof-Leichsenring, Kathleen Rosmarie Dinkel, Viktor Harms, Lars Schulte, Luise Hütt, Marc-Thorsten Nürnberg, Dirk Tiedemann, Ralf Herzschuh, Ulrike |
author_sort |
Zimmermann, Heike Hildegard |
title |
Count data of classified sequences from sedimentary ancient DNA shotgun metagenomics of core SO201-2-12KL |
title_short |
Count data of classified sequences from sedimentary ancient DNA shotgun metagenomics of core SO201-2-12KL |
title_full |
Count data of classified sequences from sedimentary ancient DNA shotgun metagenomics of core SO201-2-12KL |
title_fullStr |
Count data of classified sequences from sedimentary ancient DNA shotgun metagenomics of core SO201-2-12KL |
title_full_unstemmed |
Count data of classified sequences from sedimentary ancient DNA shotgun metagenomics of core SO201-2-12KL |
title_sort |
count data of classified sequences from sedimentary ancient dna shotgun metagenomics of core so201-2-12kl |
publisher |
PANGAEA |
publishDate |
2021 |
url |
https://doi.pangaea.de/10.1594/PANGAEA.934664 https://doi.org/10.1594/PANGAEA.934664 |
op_coverage |
LATITUDE: 53.992660 * LONGITUDE: 162.375830 * DATE/TIME START: 2009-09-09T04:49:00 * DATE/TIME END: 2009-09-09T05:59:00 |
long_lat |
ENVELOPE(162.375830,162.375830,53.992660,53.992660) |
geographic |
Pacific |
geographic_facet |
Pacific |
genre |
Kamchatka |
genre_facet |
Kamchatka |
op_relation |
Dullo, Wolf-Christian (2010): Documentation of sediment core SO201-2-12. IFM-GEOMAR Leibniz-Institute of Marine Sciences, Kiel University, PANGAEA, https://doi.org/10.1594/PANGAEA.737622 Zimmermann, Heike Hildegard; Stoof-Leichsenring, Kathleen Rosmarie; Harms, Lars; Schulte, Luise; Hütt, Marc-Thorsten; Nürnberg, Dirk; Tiedemann, Ralf; Herzschuh, Ulrike (2021): Count data of classified sequences from sedimentary ancient DNA shotgun metagenomics of core SO201-2-12KL. European Nucleotide Archive (ENA), insdc:PRJEB46821 Zimmermann, Heike Hildegard; Stoof-Leichsenring, Kathleen Rosmarie; Harms, Lars; Schulte, Luise; Hütt, Marc-Thorsten; Nürnberg, Dirk; Tiedemann, Ralf; Herzschuh, Ulrike (accepted): Shifts of marine food webs and carbon export with sea-ice loss inferred from ancient DNA. https://doi.pangaea.de/10.1594/PANGAEA.934664 https://doi.org/10.1594/PANGAEA.934664 |
op_rights |
CC-BY-4.0: Creative Commons Attribution 4.0 International Access constraints: unrestricted info:eu-repo/semantics/openAccess |
op_rightsnorm |
CC-BY |
op_doi |
https://doi.org/10.1594/PANGAEA.934664 https://doi.org/10.1594/PANGAEA.737622 |
_version_ |
1766051423284363264 |