Seawater carbonate chemistry and respiration, primary production and composition of microbial community

Ambient conditions shape microbiome responses to both short- and long-duration environment changes through processes including physiological acclimation, compositional shifts, and evolution. Thus, we predict that microbial communities inhabiting locations with larger diel, episodic, and annual varia...

Full description

Bibliographic Details
Main Authors: Wang, Z, Tsementzi, Despina, Williams, Tiffany C, Juarez, Doris L, Blinebry, Sara K, Garcia, Nathan S, Sienkiewicz, Brooke K, Konstantinidis, Konstantinos T, Johnson, Zackary I, Hunt, Dana E
Format: Dataset
Language:English
Published: PANGAEA 2021
Subjects:
EXP
pH
Online Access:https://doi.pangaea.de/10.1594/PANGAEA.923999
https://doi.org/10.1594/PANGAEA.923999
id ftpangaea:oai:pangaea.de:doi:10.1594/PANGAEA.923999
record_format openpolar
institution Open Polar
collection PANGAEA - Data Publisher for Earth & Environmental Science
op_collection_id ftpangaea
language English
topic Alkalinity
total
Aragonite saturation state
Bicarbonate ion
Bottles or small containers/Aquaria (<20 L)
Calcite saturation state
Calculated using seacarb after Nisumaa et al. (2010)
Carbon
inorganic
dissolved
Carbonate ion
Carbonate system computation flag
Carbon dioxide
Cell density
Chlorophyll a
Coast and continental shelf
Comment
Community composition and diversity
Day of experiment
Entire community
Event label
EXP
Experiment
Fugacity of carbon dioxide (water) at sea surface temperature (wet air)
Identification
Laboratory experiment
Newport_River_estuary_nearshore
Newport_River_estuary_offshore
North Atlantic
OA-ICC
Ocean Acidification International Coordination Centre
Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)
Pelagos
pH
Primary production/Photosynthesis
Primary production of carbon per hour
Replicate
Respiration
Respiration rate
oxygen
Salinity
Temperate
Temperature
water
Treatment
Type
spellingShingle Alkalinity
total
Aragonite saturation state
Bicarbonate ion
Bottles or small containers/Aquaria (<20 L)
Calcite saturation state
Calculated using seacarb after Nisumaa et al. (2010)
Carbon
inorganic
dissolved
Carbonate ion
Carbonate system computation flag
Carbon dioxide
Cell density
Chlorophyll a
Coast and continental shelf
Comment
Community composition and diversity
Day of experiment
Entire community
Event label
EXP
Experiment
Fugacity of carbon dioxide (water) at sea surface temperature (wet air)
Identification
Laboratory experiment
Newport_River_estuary_nearshore
Newport_River_estuary_offshore
North Atlantic
OA-ICC
Ocean Acidification International Coordination Centre
Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)
Pelagos
pH
Primary production/Photosynthesis
Primary production of carbon per hour
Replicate
Respiration
Respiration rate
oxygen
Salinity
Temperate
Temperature
water
Treatment
Type
Wang, Z
Tsementzi, Despina
Williams, Tiffany C
Juarez, Doris L
Blinebry, Sara K
Garcia, Nathan S
Sienkiewicz, Brooke K
Konstantinidis, Konstantinos T
Johnson, Zackary I
Hunt, Dana E
Seawater carbonate chemistry and respiration, primary production and composition of microbial community
topic_facet Alkalinity
total
Aragonite saturation state
Bicarbonate ion
Bottles or small containers/Aquaria (<20 L)
Calcite saturation state
Calculated using seacarb after Nisumaa et al. (2010)
Carbon
inorganic
dissolved
Carbonate ion
Carbonate system computation flag
Carbon dioxide
Cell density
Chlorophyll a
Coast and continental shelf
Comment
Community composition and diversity
Day of experiment
Entire community
Event label
EXP
Experiment
Fugacity of carbon dioxide (water) at sea surface temperature (wet air)
Identification
Laboratory experiment
Newport_River_estuary_nearshore
Newport_River_estuary_offshore
North Atlantic
OA-ICC
Ocean Acidification International Coordination Centre
Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)
Pelagos
pH
Primary production/Photosynthesis
Primary production of carbon per hour
Replicate
Respiration
Respiration rate
oxygen
Salinity
Temperate
Temperature
water
Treatment
Type
description Ambient conditions shape microbiome responses to both short- and long-duration environment changes through processes including physiological acclimation, compositional shifts, and evolution. Thus, we predict that microbial communities inhabiting locations with larger diel, episodic, and annual variability in temperature and pH should be less sensitive to shifts in these climate-change factors. To test this hypothesis, we compared responses of surface ocean microbes from more variable (nearshore) and more constant (offshore) sites to short-term factorial warming (+3 °C) and/or acidification (pH -0.3). In all cases, warming alone significantly altered microbial community composition, while acidification had a minor influence. Compared with nearshore microbes, warmed offshore microbiomes exhibited larger changes in community composition, phylotype abundances, respiration rates, and metatranscriptomes, suggesting increased sensitivity of microbes from the less-variable environment. Moreover, while warming increased respiration rates, offshore metatranscriptomes yielded evidence of thermal stress responses in protein synthesis, heat shock proteins, and regulation. Future oceans with warmer waters may enhance overall metabolic and biogeochemical rates, but they will host altered microbial communities, especially in relatively thermally stable regions of the oceans.
format Dataset
author Wang, Z
Tsementzi, Despina
Williams, Tiffany C
Juarez, Doris L
Blinebry, Sara K
Garcia, Nathan S
Sienkiewicz, Brooke K
Konstantinidis, Konstantinos T
Johnson, Zackary I
Hunt, Dana E
author_facet Wang, Z
Tsementzi, Despina
Williams, Tiffany C
Juarez, Doris L
Blinebry, Sara K
Garcia, Nathan S
Sienkiewicz, Brooke K
Konstantinidis, Konstantinos T
Johnson, Zackary I
Hunt, Dana E
author_sort Wang, Z
title Seawater carbonate chemistry and respiration, primary production and composition of microbial community
title_short Seawater carbonate chemistry and respiration, primary production and composition of microbial community
title_full Seawater carbonate chemistry and respiration, primary production and composition of microbial community
title_fullStr Seawater carbonate chemistry and respiration, primary production and composition of microbial community
title_full_unstemmed Seawater carbonate chemistry and respiration, primary production and composition of microbial community
title_sort seawater carbonate chemistry and respiration, primary production and composition of microbial community
publisher PANGAEA
publishDate 2021
url https://doi.pangaea.de/10.1594/PANGAEA.923999
https://doi.org/10.1594/PANGAEA.923999
op_coverage MEDIAN LATITUDE: 34.376500 * MEDIAN LONGITUDE: -76.434100 * SOUTH-BOUND LATITUDE: 34.034900 * WEST-BOUND LONGITUDE: -76.670700 * NORTH-BOUND LATITUDE: 34.718100 * EAST-BOUND LONGITUDE: -76.197500
long_lat ENVELOPE(-76.670700,-76.197500,34.718100,34.034900)
genre North Atlantic
Ocean acidification
genre_facet North Atlantic
Ocean acidification
op_relation Wang, Z; Tsementzi, Despina; Williams, Tiffany C; Juarez, Doris L; Blinebry, Sara K; Garcia, Nathan S; Sienkiewicz, Brooke K; Konstantinidis, Konstantinos T; Johnson, Zackary I; Hunt, Dana E (2020): Environmental stability impacts the differential sensitivity of marine microbiomes to increases in temperature and acidity. The ISME Journal, https://doi.org/10.1038/s41396-020-00748-2
Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James C; Gentili, Bernard; Hagens, Mathilde; Hofmann, Andreas; Mueller, Jens-Daniel; Proye, Aurélien; Rae, James; Soetaert, Karline (2019): seacarb: seawater carbonate chemistry with R. R package version 3.2.12. https://CRAN.R-project.org/package=seacarb
https://doi.pangaea.de/10.1594/PANGAEA.923999
https://doi.org/10.1594/PANGAEA.923999
op_rights CC-BY-4.0: Creative Commons Attribution 4.0 International
Access constraints: unrestricted
info:eu-repo/semantics/openAccess
op_doi https://doi.org/10.1594/PANGAEA.92399910.1038/s41396-020-00748-2
_version_ 1810464631912660992
spelling ftpangaea:oai:pangaea.de:doi:10.1594/PANGAEA.923999 2024-09-15T18:24:18+00:00 Seawater carbonate chemistry and respiration, primary production and composition of microbial community Wang, Z Tsementzi, Despina Williams, Tiffany C Juarez, Doris L Blinebry, Sara K Garcia, Nathan S Sienkiewicz, Brooke K Konstantinidis, Konstantinos T Johnson, Zackary I Hunt, Dana E MEDIAN LATITUDE: 34.376500 * MEDIAN LONGITUDE: -76.434100 * SOUTH-BOUND LATITUDE: 34.034900 * WEST-BOUND LONGITUDE: -76.670700 * NORTH-BOUND LATITUDE: 34.718100 * EAST-BOUND LONGITUDE: -76.197500 2021 text/tab-separated-values, 12208 data points https://doi.pangaea.de/10.1594/PANGAEA.923999 https://doi.org/10.1594/PANGAEA.923999 en eng PANGAEA Wang, Z; Tsementzi, Despina; Williams, Tiffany C; Juarez, Doris L; Blinebry, Sara K; Garcia, Nathan S; Sienkiewicz, Brooke K; Konstantinidis, Konstantinos T; Johnson, Zackary I; Hunt, Dana E (2020): Environmental stability impacts the differential sensitivity of marine microbiomes to increases in temperature and acidity. The ISME Journal, https://doi.org/10.1038/s41396-020-00748-2 Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James C; Gentili, Bernard; Hagens, Mathilde; Hofmann, Andreas; Mueller, Jens-Daniel; Proye, Aurélien; Rae, James; Soetaert, Karline (2019): seacarb: seawater carbonate chemistry with R. R package version 3.2.12. https://CRAN.R-project.org/package=seacarb https://doi.pangaea.de/10.1594/PANGAEA.923999 https://doi.org/10.1594/PANGAEA.923999 CC-BY-4.0: Creative Commons Attribution 4.0 International Access constraints: unrestricted info:eu-repo/semantics/openAccess Alkalinity total Aragonite saturation state Bicarbonate ion Bottles or small containers/Aquaria (<20 L) Calcite saturation state Calculated using seacarb after Nisumaa et al. (2010) Carbon inorganic dissolved Carbonate ion Carbonate system computation flag Carbon dioxide Cell density Chlorophyll a Coast and continental shelf Comment Community composition and diversity Day of experiment Entire community Event label EXP Experiment Fugacity of carbon dioxide (water) at sea surface temperature (wet air) Identification Laboratory experiment Newport_River_estuary_nearshore Newport_River_estuary_offshore North Atlantic OA-ICC Ocean Acidification International Coordination Centre Partial pressure of carbon dioxide (water) at sea surface temperature (wet air) Pelagos pH Primary production/Photosynthesis Primary production of carbon per hour Replicate Respiration Respiration rate oxygen Salinity Temperate Temperature water Treatment Type dataset 2021 ftpangaea https://doi.org/10.1594/PANGAEA.92399910.1038/s41396-020-00748-2 2024-07-24T02:31:34Z Ambient conditions shape microbiome responses to both short- and long-duration environment changes through processes including physiological acclimation, compositional shifts, and evolution. Thus, we predict that microbial communities inhabiting locations with larger diel, episodic, and annual variability in temperature and pH should be less sensitive to shifts in these climate-change factors. To test this hypothesis, we compared responses of surface ocean microbes from more variable (nearshore) and more constant (offshore) sites to short-term factorial warming (+3 °C) and/or acidification (pH -0.3). In all cases, warming alone significantly altered microbial community composition, while acidification had a minor influence. Compared with nearshore microbes, warmed offshore microbiomes exhibited larger changes in community composition, phylotype abundances, respiration rates, and metatranscriptomes, suggesting increased sensitivity of microbes from the less-variable environment. Moreover, while warming increased respiration rates, offshore metatranscriptomes yielded evidence of thermal stress responses in protein synthesis, heat shock proteins, and regulation. Future oceans with warmer waters may enhance overall metabolic and biogeochemical rates, but they will host altered microbial communities, especially in relatively thermally stable regions of the oceans. Dataset North Atlantic Ocean acidification PANGAEA - Data Publisher for Earth & Environmental Science ENVELOPE(-76.670700,-76.197500,34.718100,34.034900)