Seawater carbonate chemistry and crystallographic vital effect of the coral skeleton

Distinguishing between environmental and species-specific physiological signals, recorded in coral skeletons, is one of the fundamental challenges in their reliable use as (paleo)climate proxies. To date, characteristic biological bias in skeleton-recorded environmental signatures (vital effect) was...

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Bibliographic Details
Main Authors: Coronado, Ismael, Fine, Maoz, Bosellini, Francesca R, Stolarski, J
Format: Dataset
Language:English
Published: PANGAEA 2019
Subjects:
pH
Online Access:https://doi.pangaea.de/10.1594/PANGAEA.913398
https://doi.org/10.1594/PANGAEA.913398
id ftpangaea:oai:pangaea.de:doi:10.1594/PANGAEA.913398
record_format openpolar
spelling ftpangaea:oai:pangaea.de:doi:10.1594/PANGAEA.913398 2024-09-15T18:28:20+00:00 Seawater carbonate chemistry and crystallographic vital effect of the coral skeleton Coronado, Ismael Fine, Maoz Bosellini, Francesca R Stolarski, J 2019 text/tab-separated-values, 2970 data points https://doi.pangaea.de/10.1594/PANGAEA.913398 https://doi.org/10.1594/PANGAEA.913398 en eng PANGAEA Coronado, Ismael; Fine, Maoz; Bosellini, Francesca R; Stolarski, J (2019): Impact of ocean acidification on crystallographic vital effect of the coral skeleton. Nature Communications, 10(1), https://doi.org/10.1038/s41467-019-10833-6 Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James C; Gentili, Bernard; Hagens, Mathilde; Hofmann, Andreas; Mueller, Jens-Daniel; Proye, Aurélien; Rae, James; Soetaert, Karline (2019): seacarb: seawater carbonate chemistry with R. R package version 3.2.12. https://CRAN.R-project.org/package=seacarb https://doi.pangaea.de/10.1594/PANGAEA.913398 https://doi.org/10.1594/PANGAEA.913398 CC-BY-4.0: Creative Commons Attribution 4.0 International Access constraints: unrestricted info:eu-repo/semantics/openAccess Alkalinity total Animalia Aragonite saturation state Area Benthic animals Benthos Bicarbonate ion Calcite lattice parameter a lattice parameter b lattice parameter c Calcite saturation state Calculated using CO2SYS Calculated using seacarb after Nisumaa et al. (2010) Carbon inorganic dissolved Carbonate ion Carbonate system computation flag Carbon dioxide Cell volume Chi-squared test result Cnidaria Coast and continental shelf Containers and aquaria (20-1000 L or < 1 m**2) Crystal lattice strain Crystallite size standard deviation Experiment duration Fugacity of carbon dioxide (water) at sea surface temperature (wet air) Greyscale value Greyscale values Identification Laboratory experiment Number OA-ICC Ocean Acidification International Coordination Centre Other studied parameter or process Partial pressure of carbon dioxide (water) at sea surface temperature (wet air) Percentage pH Potentiometric dataset 2019 ftpangaea https://doi.org/10.1594/PANGAEA.91339810.1038/s41467-019-10833-6 2024-07-24T02:31:34Z Distinguishing between environmental and species-specific physiological signals, recorded in coral skeletons, is one of the fundamental challenges in their reliable use as (paleo)climate proxies. To date, characteristic biological bias in skeleton-recorded environmental signatures (vital effect) was shown in shifts in geochemical signatures. Herein, for the first time, we have assessed crystallographic parameters of bio-aragonite to study the response of the reef-building coral Stylophora pistillata to experimental seawater acidification (pH 8.2, 7.6 and 7.3). Skeletons formed under high pCO2 conditions show systematic crystallographic changes such as better constrained crystal orientation and anisotropic distortions of bio-aragonite lattice parameters due to increased amount of intracrystalline organic matrix and water content. These variations in crystallographic features that seem to reflect physiological adjustments of biomineralizing organisms to environmental change, are herein called crystallographic vital effect (CVE). CVE may register those changes in the biomineralization process that may not yet be perceived at the macromorphological skeletal level. Dataset Ocean acidification PANGAEA - Data Publisher for Earth & Environmental Science
institution Open Polar
collection PANGAEA - Data Publisher for Earth & Environmental Science
op_collection_id ftpangaea
language English
topic Alkalinity
total
Animalia
Aragonite saturation state
Area
Benthic animals
Benthos
Bicarbonate ion
Calcite
lattice parameter a
lattice parameter b
lattice parameter c
Calcite saturation state
Calculated using CO2SYS
Calculated using seacarb after Nisumaa et al. (2010)
Carbon
inorganic
dissolved
Carbonate ion
Carbonate system computation flag
Carbon dioxide
Cell volume
Chi-squared test
result
Cnidaria
Coast and continental shelf
Containers and aquaria (20-1000 L or < 1 m**2)
Crystal lattice strain
Crystallite size
standard deviation
Experiment duration
Fugacity of carbon dioxide (water) at sea surface temperature (wet air)
Greyscale value
Greyscale values
Identification
Laboratory experiment
Number
OA-ICC
Ocean Acidification International Coordination Centre
Other studied parameter or process
Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)
Percentage
pH
Potentiometric
spellingShingle Alkalinity
total
Animalia
Aragonite saturation state
Area
Benthic animals
Benthos
Bicarbonate ion
Calcite
lattice parameter a
lattice parameter b
lattice parameter c
Calcite saturation state
Calculated using CO2SYS
Calculated using seacarb after Nisumaa et al. (2010)
Carbon
inorganic
dissolved
Carbonate ion
Carbonate system computation flag
Carbon dioxide
Cell volume
Chi-squared test
result
Cnidaria
Coast and continental shelf
Containers and aquaria (20-1000 L or < 1 m**2)
Crystal lattice strain
Crystallite size
standard deviation
Experiment duration
Fugacity of carbon dioxide (water) at sea surface temperature (wet air)
Greyscale value
Greyscale values
Identification
Laboratory experiment
Number
OA-ICC
Ocean Acidification International Coordination Centre
Other studied parameter or process
Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)
Percentage
pH
Potentiometric
Coronado, Ismael
Fine, Maoz
Bosellini, Francesca R
Stolarski, J
Seawater carbonate chemistry and crystallographic vital effect of the coral skeleton
topic_facet Alkalinity
total
Animalia
Aragonite saturation state
Area
Benthic animals
Benthos
Bicarbonate ion
Calcite
lattice parameter a
lattice parameter b
lattice parameter c
Calcite saturation state
Calculated using CO2SYS
Calculated using seacarb after Nisumaa et al. (2010)
Carbon
inorganic
dissolved
Carbonate ion
Carbonate system computation flag
Carbon dioxide
Cell volume
Chi-squared test
result
Cnidaria
Coast and continental shelf
Containers and aquaria (20-1000 L or < 1 m**2)
Crystal lattice strain
Crystallite size
standard deviation
Experiment duration
Fugacity of carbon dioxide (water) at sea surface temperature (wet air)
Greyscale value
Greyscale values
Identification
Laboratory experiment
Number
OA-ICC
Ocean Acidification International Coordination Centre
Other studied parameter or process
Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)
Percentage
pH
Potentiometric
description Distinguishing between environmental and species-specific physiological signals, recorded in coral skeletons, is one of the fundamental challenges in their reliable use as (paleo)climate proxies. To date, characteristic biological bias in skeleton-recorded environmental signatures (vital effect) was shown in shifts in geochemical signatures. Herein, for the first time, we have assessed crystallographic parameters of bio-aragonite to study the response of the reef-building coral Stylophora pistillata to experimental seawater acidification (pH 8.2, 7.6 and 7.3). Skeletons formed under high pCO2 conditions show systematic crystallographic changes such as better constrained crystal orientation and anisotropic distortions of bio-aragonite lattice parameters due to increased amount of intracrystalline organic matrix and water content. These variations in crystallographic features that seem to reflect physiological adjustments of biomineralizing organisms to environmental change, are herein called crystallographic vital effect (CVE). CVE may register those changes in the biomineralization process that may not yet be perceived at the macromorphological skeletal level.
format Dataset
author Coronado, Ismael
Fine, Maoz
Bosellini, Francesca R
Stolarski, J
author_facet Coronado, Ismael
Fine, Maoz
Bosellini, Francesca R
Stolarski, J
author_sort Coronado, Ismael
title Seawater carbonate chemistry and crystallographic vital effect of the coral skeleton
title_short Seawater carbonate chemistry and crystallographic vital effect of the coral skeleton
title_full Seawater carbonate chemistry and crystallographic vital effect of the coral skeleton
title_fullStr Seawater carbonate chemistry and crystallographic vital effect of the coral skeleton
title_full_unstemmed Seawater carbonate chemistry and crystallographic vital effect of the coral skeleton
title_sort seawater carbonate chemistry and crystallographic vital effect of the coral skeleton
publisher PANGAEA
publishDate 2019
url https://doi.pangaea.de/10.1594/PANGAEA.913398
https://doi.org/10.1594/PANGAEA.913398
genre Ocean acidification
genre_facet Ocean acidification
op_relation Coronado, Ismael; Fine, Maoz; Bosellini, Francesca R; Stolarski, J (2019): Impact of ocean acidification on crystallographic vital effect of the coral skeleton. Nature Communications, 10(1), https://doi.org/10.1038/s41467-019-10833-6
Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James C; Gentili, Bernard; Hagens, Mathilde; Hofmann, Andreas; Mueller, Jens-Daniel; Proye, Aurélien; Rae, James; Soetaert, Karline (2019): seacarb: seawater carbonate chemistry with R. R package version 3.2.12. https://CRAN.R-project.org/package=seacarb
https://doi.pangaea.de/10.1594/PANGAEA.913398
https://doi.org/10.1594/PANGAEA.913398
op_rights CC-BY-4.0: Creative Commons Attribution 4.0 International
Access constraints: unrestricted
info:eu-repo/semantics/openAccess
op_doi https://doi.org/10.1594/PANGAEA.91339810.1038/s41467-019-10833-6
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