Seawater carbonate chemistry and the bacterial community present in larvae and spat of Crassostrea gigas

Changes in marine environments, including pH changes, have been correlated to alterations in the physiology and disease susceptibility of cultured organisms at the early stages of development. In this study, high-throughput sequencing of the V3-V4 region of the 16S rRNA gene was performed to evaluat...

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Main Authors: Flores-Higuera, Francisco A, Wördenweber, Robin, Luis-Villaseñor, Irasema E, Rochin-Arenas, Jesús A, Gómez-Gil, Bruno, Mazón-Suástegui, José Manuel, Voltolina, D
Format: Dataset
Language:English
Published: PANGAEA 2019
Subjects:
pH
Online Access:https://doi.pangaea.de/10.1594/PANGAEA.913332
https://doi.org/10.1594/PANGAEA.913332
id ftpangaea:oai:pangaea.de:doi:10.1594/PANGAEA.913332
record_format openpolar
spelling ftpangaea:oai:pangaea.de:doi:10.1594/PANGAEA.913332 2024-09-15T18:03:06+00:00 Seawater carbonate chemistry and the bacterial community present in larvae and spat of Crassostrea gigas Flores-Higuera, Francisco A Wördenweber, Robin Luis-Villaseñor, Irasema E Rochin-Arenas, Jesús A Gómez-Gil, Bruno Mazón-Suástegui, José Manuel Voltolina, D 2019 text/tab-separated-values, 384 data points https://doi.pangaea.de/10.1594/PANGAEA.913332 https://doi.org/10.1594/PANGAEA.913332 en eng PANGAEA Flores-Higuera, Francisco A; Luis-Villaseñor, Irasema E; Rochin-Arenas, Jesús A; Gómez-Gil, Bruno; Mazón-Suástegui, José Manuel; Voltolina, Domenico; Medina-Hernández, Diana (2019): Effect of pH on the bacterial community present in larvae and spat of Crassostrea gigas. Latin American Journal of Aquatic Research, 47(3), 513-523, https://doi.org/10.3856/vol47-issue3-fulltext-13 Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James C; Gentili, Bernard; Hagens, Mathilde; Hofmann, Andreas; Mueller, Jens-Daniel; Proye, Aurélien; Rae, James; Soetaert, Karline (2019): seacarb: seawater carbonate chemistry with R. R package version 3.2.12. https://CRAN.R-project.org/package=seacarb https://doi.pangaea.de/10.1594/PANGAEA.913332 https://doi.org/10.1594/PANGAEA.913332 CC-BY-4.0: Creative Commons Attribution 4.0 International Access constraints: unrestricted info:eu-repo/semantics/openAccess Alkalinity total Animalia Aragonite saturation state standard deviation Bicarbonate ion Bottles or small containers/Aquaria (<20 L) Calcite saturation state Calculated using seacarb after Nisumaa et al. (2010) Carbon inorganic dissolved Carbonate ion Carbonate system computation flag Carbon dioxide Community composition and diversity Crassostrea gigas Entire community Evenness of species Experiment duration Fugacity of carbon dioxide (water) at sea surface temperature (wet air) Laboratory experiment Life stage Mollusca Not applicable OA-ICC Ocean Acidification International Coordination Centre Partial pressure of carbon dioxide Partial pressure of carbon dioxide (water) at sea surface temperature (wet air) Pelagos pH Registration number of species Salinity Shannon Diversity Index dataset 2019 ftpangaea https://doi.org/10.1594/PANGAEA.91333210.3856/vol47-issue3-fulltext-13 2024-07-24T02:31:34Z Changes in marine environments, including pH changes, have been correlated to alterations in the physiology and disease susceptibility of cultured organisms at the early stages of development. In this study, high-throughput sequencing of the V3-V4 region of the 16S rRNA gene was performed to evaluate the bacterial biodiversity of Crassostrea gigas pediveliger larvae and spat under acidic stress compared to that of larvae at normal pH value. The evaluation was performed in an experimental system with continuous water flow and pH manipulation by CO2 bubbling to simulate acidification (pH 7.38 ± 0.039), using the current ocean pH conditions (pH 8.116 ± 0.023) as a reference. The results indicated that the bacterial communities associated with both pediveliger larvae and spat were modified in response to acidic conditions. The families Rhodobacteraceae and Campylobacteraceae were the most affected by the change in pH, with increases in Vibrionaceae in pediveliger larvae and Planctomycetaceae and Phyllobacteriaceae in spat detected. The results of this study demonstrate that the bacterial communities associated with C. gigas pediveliger larvae and spat are responsive to changes in ocean acidification Dataset Crassostrea gigas Ocean acidification PANGAEA - Data Publisher for Earth & Environmental Science
institution Open Polar
collection PANGAEA - Data Publisher for Earth & Environmental Science
op_collection_id ftpangaea
language English
topic Alkalinity
total
Animalia
Aragonite saturation state
standard deviation
Bicarbonate ion
Bottles or small containers/Aquaria (<20 L)
Calcite saturation state
Calculated using seacarb after Nisumaa et al. (2010)
Carbon
inorganic
dissolved
Carbonate ion
Carbonate system computation flag
Carbon dioxide
Community composition and diversity
Crassostrea gigas
Entire community
Evenness of species
Experiment duration
Fugacity of carbon dioxide (water) at sea surface temperature (wet air)
Laboratory experiment
Life stage
Mollusca
Not applicable
OA-ICC
Ocean Acidification International Coordination Centre
Partial pressure of carbon dioxide
Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)
Pelagos
pH
Registration number of species
Salinity
Shannon Diversity Index
spellingShingle Alkalinity
total
Animalia
Aragonite saturation state
standard deviation
Bicarbonate ion
Bottles or small containers/Aquaria (<20 L)
Calcite saturation state
Calculated using seacarb after Nisumaa et al. (2010)
Carbon
inorganic
dissolved
Carbonate ion
Carbonate system computation flag
Carbon dioxide
Community composition and diversity
Crassostrea gigas
Entire community
Evenness of species
Experiment duration
Fugacity of carbon dioxide (water) at sea surface temperature (wet air)
Laboratory experiment
Life stage
Mollusca
Not applicable
OA-ICC
Ocean Acidification International Coordination Centre
Partial pressure of carbon dioxide
Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)
Pelagos
pH
Registration number of species
Salinity
Shannon Diversity Index
Flores-Higuera, Francisco A
Wördenweber, Robin
Luis-Villaseñor, Irasema E
Rochin-Arenas, Jesús A
Gómez-Gil, Bruno
Mazón-Suástegui, José Manuel
Voltolina, D
Seawater carbonate chemistry and the bacterial community present in larvae and spat of Crassostrea gigas
topic_facet Alkalinity
total
Animalia
Aragonite saturation state
standard deviation
Bicarbonate ion
Bottles or small containers/Aquaria (<20 L)
Calcite saturation state
Calculated using seacarb after Nisumaa et al. (2010)
Carbon
inorganic
dissolved
Carbonate ion
Carbonate system computation flag
Carbon dioxide
Community composition and diversity
Crassostrea gigas
Entire community
Evenness of species
Experiment duration
Fugacity of carbon dioxide (water) at sea surface temperature (wet air)
Laboratory experiment
Life stage
Mollusca
Not applicable
OA-ICC
Ocean Acidification International Coordination Centre
Partial pressure of carbon dioxide
Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)
Pelagos
pH
Registration number of species
Salinity
Shannon Diversity Index
description Changes in marine environments, including pH changes, have been correlated to alterations in the physiology and disease susceptibility of cultured organisms at the early stages of development. In this study, high-throughput sequencing of the V3-V4 region of the 16S rRNA gene was performed to evaluate the bacterial biodiversity of Crassostrea gigas pediveliger larvae and spat under acidic stress compared to that of larvae at normal pH value. The evaluation was performed in an experimental system with continuous water flow and pH manipulation by CO2 bubbling to simulate acidification (pH 7.38 ± 0.039), using the current ocean pH conditions (pH 8.116 ± 0.023) as a reference. The results indicated that the bacterial communities associated with both pediveliger larvae and spat were modified in response to acidic conditions. The families Rhodobacteraceae and Campylobacteraceae were the most affected by the change in pH, with increases in Vibrionaceae in pediveliger larvae and Planctomycetaceae and Phyllobacteriaceae in spat detected. The results of this study demonstrate that the bacterial communities associated with C. gigas pediveliger larvae and spat are responsive to changes in ocean acidification
format Dataset
author Flores-Higuera, Francisco A
Wördenweber, Robin
Luis-Villaseñor, Irasema E
Rochin-Arenas, Jesús A
Gómez-Gil, Bruno
Mazón-Suástegui, José Manuel
Voltolina, D
author_facet Flores-Higuera, Francisco A
Wördenweber, Robin
Luis-Villaseñor, Irasema E
Rochin-Arenas, Jesús A
Gómez-Gil, Bruno
Mazón-Suástegui, José Manuel
Voltolina, D
author_sort Flores-Higuera, Francisco A
title Seawater carbonate chemistry and the bacterial community present in larvae and spat of Crassostrea gigas
title_short Seawater carbonate chemistry and the bacterial community present in larvae and spat of Crassostrea gigas
title_full Seawater carbonate chemistry and the bacterial community present in larvae and spat of Crassostrea gigas
title_fullStr Seawater carbonate chemistry and the bacterial community present in larvae and spat of Crassostrea gigas
title_full_unstemmed Seawater carbonate chemistry and the bacterial community present in larvae and spat of Crassostrea gigas
title_sort seawater carbonate chemistry and the bacterial community present in larvae and spat of crassostrea gigas
publisher PANGAEA
publishDate 2019
url https://doi.pangaea.de/10.1594/PANGAEA.913332
https://doi.org/10.1594/PANGAEA.913332
genre Crassostrea gigas
Ocean acidification
genre_facet Crassostrea gigas
Ocean acidification
op_relation Flores-Higuera, Francisco A; Luis-Villaseñor, Irasema E; Rochin-Arenas, Jesús A; Gómez-Gil, Bruno; Mazón-Suástegui, José Manuel; Voltolina, Domenico; Medina-Hernández, Diana (2019): Effect of pH on the bacterial community present in larvae and spat of Crassostrea gigas. Latin American Journal of Aquatic Research, 47(3), 513-523, https://doi.org/10.3856/vol47-issue3-fulltext-13
Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James C; Gentili, Bernard; Hagens, Mathilde; Hofmann, Andreas; Mueller, Jens-Daniel; Proye, Aurélien; Rae, James; Soetaert, Karline (2019): seacarb: seawater carbonate chemistry with R. R package version 3.2.12. https://CRAN.R-project.org/package=seacarb
https://doi.pangaea.de/10.1594/PANGAEA.913332
https://doi.org/10.1594/PANGAEA.913332
op_rights CC-BY-4.0: Creative Commons Attribution 4.0 International
Access constraints: unrestricted
info:eu-repo/semantics/openAccess
op_doi https://doi.org/10.1594/PANGAEA.91333210.3856/vol47-issue3-fulltext-13
_version_ 1810440624745218048