Seawater carbonate chemistry and the bacterial community present in larvae and spat of Crassostrea gigas
Changes in marine environments, including pH changes, have been correlated to alterations in the physiology and disease susceptibility of cultured organisms at the early stages of development. In this study, high-throughput sequencing of the V3-V4 region of the 16S rRNA gene was performed to evaluat...
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Online Access: | https://doi.pangaea.de/10.1594/PANGAEA.913332 https://doi.org/10.1594/PANGAEA.913332 |
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ftpangaea:oai:pangaea.de:doi:10.1594/PANGAEA.913332 2024-09-15T18:03:06+00:00 Seawater carbonate chemistry and the bacterial community present in larvae and spat of Crassostrea gigas Flores-Higuera, Francisco A Wördenweber, Robin Luis-Villaseñor, Irasema E Rochin-Arenas, Jesús A Gómez-Gil, Bruno Mazón-Suástegui, José Manuel Voltolina, D 2019 text/tab-separated-values, 384 data points https://doi.pangaea.de/10.1594/PANGAEA.913332 https://doi.org/10.1594/PANGAEA.913332 en eng PANGAEA Flores-Higuera, Francisco A; Luis-Villaseñor, Irasema E; Rochin-Arenas, Jesús A; Gómez-Gil, Bruno; Mazón-Suástegui, José Manuel; Voltolina, Domenico; Medina-Hernández, Diana (2019): Effect of pH on the bacterial community present in larvae and spat of Crassostrea gigas. Latin American Journal of Aquatic Research, 47(3), 513-523, https://doi.org/10.3856/vol47-issue3-fulltext-13 Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James C; Gentili, Bernard; Hagens, Mathilde; Hofmann, Andreas; Mueller, Jens-Daniel; Proye, Aurélien; Rae, James; Soetaert, Karline (2019): seacarb: seawater carbonate chemistry with R. R package version 3.2.12. https://CRAN.R-project.org/package=seacarb https://doi.pangaea.de/10.1594/PANGAEA.913332 https://doi.org/10.1594/PANGAEA.913332 CC-BY-4.0: Creative Commons Attribution 4.0 International Access constraints: unrestricted info:eu-repo/semantics/openAccess Alkalinity total Animalia Aragonite saturation state standard deviation Bicarbonate ion Bottles or small containers/Aquaria (<20 L) Calcite saturation state Calculated using seacarb after Nisumaa et al. (2010) Carbon inorganic dissolved Carbonate ion Carbonate system computation flag Carbon dioxide Community composition and diversity Crassostrea gigas Entire community Evenness of species Experiment duration Fugacity of carbon dioxide (water) at sea surface temperature (wet air) Laboratory experiment Life stage Mollusca Not applicable OA-ICC Ocean Acidification International Coordination Centre Partial pressure of carbon dioxide Partial pressure of carbon dioxide (water) at sea surface temperature (wet air) Pelagos pH Registration number of species Salinity Shannon Diversity Index dataset 2019 ftpangaea https://doi.org/10.1594/PANGAEA.91333210.3856/vol47-issue3-fulltext-13 2024-07-24T02:31:34Z Changes in marine environments, including pH changes, have been correlated to alterations in the physiology and disease susceptibility of cultured organisms at the early stages of development. In this study, high-throughput sequencing of the V3-V4 region of the 16S rRNA gene was performed to evaluate the bacterial biodiversity of Crassostrea gigas pediveliger larvae and spat under acidic stress compared to that of larvae at normal pH value. The evaluation was performed in an experimental system with continuous water flow and pH manipulation by CO2 bubbling to simulate acidification (pH 7.38 ± 0.039), using the current ocean pH conditions (pH 8.116 ± 0.023) as a reference. The results indicated that the bacterial communities associated with both pediveliger larvae and spat were modified in response to acidic conditions. The families Rhodobacteraceae and Campylobacteraceae were the most affected by the change in pH, with increases in Vibrionaceae in pediveliger larvae and Planctomycetaceae and Phyllobacteriaceae in spat detected. The results of this study demonstrate that the bacterial communities associated with C. gigas pediveliger larvae and spat are responsive to changes in ocean acidification Dataset Crassostrea gigas Ocean acidification PANGAEA - Data Publisher for Earth & Environmental Science |
institution |
Open Polar |
collection |
PANGAEA - Data Publisher for Earth & Environmental Science |
op_collection_id |
ftpangaea |
language |
English |
topic |
Alkalinity total Animalia Aragonite saturation state standard deviation Bicarbonate ion Bottles or small containers/Aquaria (<20 L) Calcite saturation state Calculated using seacarb after Nisumaa et al. (2010) Carbon inorganic dissolved Carbonate ion Carbonate system computation flag Carbon dioxide Community composition and diversity Crassostrea gigas Entire community Evenness of species Experiment duration Fugacity of carbon dioxide (water) at sea surface temperature (wet air) Laboratory experiment Life stage Mollusca Not applicable OA-ICC Ocean Acidification International Coordination Centre Partial pressure of carbon dioxide Partial pressure of carbon dioxide (water) at sea surface temperature (wet air) Pelagos pH Registration number of species Salinity Shannon Diversity Index |
spellingShingle |
Alkalinity total Animalia Aragonite saturation state standard deviation Bicarbonate ion Bottles or small containers/Aquaria (<20 L) Calcite saturation state Calculated using seacarb after Nisumaa et al. (2010) Carbon inorganic dissolved Carbonate ion Carbonate system computation flag Carbon dioxide Community composition and diversity Crassostrea gigas Entire community Evenness of species Experiment duration Fugacity of carbon dioxide (water) at sea surface temperature (wet air) Laboratory experiment Life stage Mollusca Not applicable OA-ICC Ocean Acidification International Coordination Centre Partial pressure of carbon dioxide Partial pressure of carbon dioxide (water) at sea surface temperature (wet air) Pelagos pH Registration number of species Salinity Shannon Diversity Index Flores-Higuera, Francisco A Wördenweber, Robin Luis-Villaseñor, Irasema E Rochin-Arenas, Jesús A Gómez-Gil, Bruno Mazón-Suástegui, José Manuel Voltolina, D Seawater carbonate chemistry and the bacterial community present in larvae and spat of Crassostrea gigas |
topic_facet |
Alkalinity total Animalia Aragonite saturation state standard deviation Bicarbonate ion Bottles or small containers/Aquaria (<20 L) Calcite saturation state Calculated using seacarb after Nisumaa et al. (2010) Carbon inorganic dissolved Carbonate ion Carbonate system computation flag Carbon dioxide Community composition and diversity Crassostrea gigas Entire community Evenness of species Experiment duration Fugacity of carbon dioxide (water) at sea surface temperature (wet air) Laboratory experiment Life stage Mollusca Not applicable OA-ICC Ocean Acidification International Coordination Centre Partial pressure of carbon dioxide Partial pressure of carbon dioxide (water) at sea surface temperature (wet air) Pelagos pH Registration number of species Salinity Shannon Diversity Index |
description |
Changes in marine environments, including pH changes, have been correlated to alterations in the physiology and disease susceptibility of cultured organisms at the early stages of development. In this study, high-throughput sequencing of the V3-V4 region of the 16S rRNA gene was performed to evaluate the bacterial biodiversity of Crassostrea gigas pediveliger larvae and spat under acidic stress compared to that of larvae at normal pH value. The evaluation was performed in an experimental system with continuous water flow and pH manipulation by CO2 bubbling to simulate acidification (pH 7.38 ± 0.039), using the current ocean pH conditions (pH 8.116 ± 0.023) as a reference. The results indicated that the bacterial communities associated with both pediveliger larvae and spat were modified in response to acidic conditions. The families Rhodobacteraceae and Campylobacteraceae were the most affected by the change in pH, with increases in Vibrionaceae in pediveliger larvae and Planctomycetaceae and Phyllobacteriaceae in spat detected. The results of this study demonstrate that the bacterial communities associated with C. gigas pediveliger larvae and spat are responsive to changes in ocean acidification |
format |
Dataset |
author |
Flores-Higuera, Francisco A Wördenweber, Robin Luis-Villaseñor, Irasema E Rochin-Arenas, Jesús A Gómez-Gil, Bruno Mazón-Suástegui, José Manuel Voltolina, D |
author_facet |
Flores-Higuera, Francisco A Wördenweber, Robin Luis-Villaseñor, Irasema E Rochin-Arenas, Jesús A Gómez-Gil, Bruno Mazón-Suástegui, José Manuel Voltolina, D |
author_sort |
Flores-Higuera, Francisco A |
title |
Seawater carbonate chemistry and the bacterial community present in larvae and spat of Crassostrea gigas |
title_short |
Seawater carbonate chemistry and the bacterial community present in larvae and spat of Crassostrea gigas |
title_full |
Seawater carbonate chemistry and the bacterial community present in larvae and spat of Crassostrea gigas |
title_fullStr |
Seawater carbonate chemistry and the bacterial community present in larvae and spat of Crassostrea gigas |
title_full_unstemmed |
Seawater carbonate chemistry and the bacterial community present in larvae and spat of Crassostrea gigas |
title_sort |
seawater carbonate chemistry and the bacterial community present in larvae and spat of crassostrea gigas |
publisher |
PANGAEA |
publishDate |
2019 |
url |
https://doi.pangaea.de/10.1594/PANGAEA.913332 https://doi.org/10.1594/PANGAEA.913332 |
genre |
Crassostrea gigas Ocean acidification |
genre_facet |
Crassostrea gigas Ocean acidification |
op_relation |
Flores-Higuera, Francisco A; Luis-Villaseñor, Irasema E; Rochin-Arenas, Jesús A; Gómez-Gil, Bruno; Mazón-Suástegui, José Manuel; Voltolina, Domenico; Medina-Hernández, Diana (2019): Effect of pH on the bacterial community present in larvae and spat of Crassostrea gigas. Latin American Journal of Aquatic Research, 47(3), 513-523, https://doi.org/10.3856/vol47-issue3-fulltext-13 Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James C; Gentili, Bernard; Hagens, Mathilde; Hofmann, Andreas; Mueller, Jens-Daniel; Proye, Aurélien; Rae, James; Soetaert, Karline (2019): seacarb: seawater carbonate chemistry with R. R package version 3.2.12. https://CRAN.R-project.org/package=seacarb https://doi.pangaea.de/10.1594/PANGAEA.913332 https://doi.org/10.1594/PANGAEA.913332 |
op_rights |
CC-BY-4.0: Creative Commons Attribution 4.0 International Access constraints: unrestricted info:eu-repo/semantics/openAccess |
op_doi |
https://doi.org/10.1594/PANGAEA.91333210.3856/vol47-issue3-fulltext-13 |
_version_ |
1810440624745218048 |