Seawater carbonate chemistry and dry weight of 5 and 15 days-post-hatch Atlantic cod larvae
Ocean acidification (OA), a direct consequence of increasing atmospheric CO2 concentration dissolving in ocean waters, is impacting many fish species. Little is known about the molecular mechanisms underlying the observed physiological impacts in fish. We used RNAseq to characterize the transcriptom...
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Format: | Dataset |
Language: | English |
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PANGAEA
2019
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Online Access: | https://doi.pangaea.de/10.1594/PANGAEA.911498 https://doi.org/10.1594/PANGAEA.911498 |
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ftpangaea:oai:pangaea.de:doi:10.1594/PANGAEA.911498 |
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record_format |
openpolar |
institution |
Open Polar |
collection |
PANGAEA - Data Publisher for Earth & Environmental Science |
op_collection_id |
ftpangaea |
language |
English |
topic |
Age Alkalinity total Animalia Aragonite saturation state Barents_Sea Bicarbonate ion Calcite saturation state Calculated using seacarb after Nisumaa et al. (2010) Carbon inorganic dissolved Carbonate ion Carbonate system computation flag Carbon dioxide Chordata Coast and continental shelf Containers and aquaria (20-1000 L or < 1 m**2) EXP Experiment Fugacity of carbon dioxide (water) at sea surface temperature (wet air) Gadus morhua Growth/Morphology Identification Laboratory experiment Larvae dry mass Nekton North Atlantic OA-ICC Ocean Acidification International Coordination Centre Partial pressure of carbon dioxide standard deviation Partial pressure of carbon dioxide (water) at sea surface temperature (wet air) Pelagos pH Polar Registration number of species Salinity Sample optional label/labor no Single species Species Temperature water Treatment Type Uniform resource locator/link to reference |
spellingShingle |
Age Alkalinity total Animalia Aragonite saturation state Barents_Sea Bicarbonate ion Calcite saturation state Calculated using seacarb after Nisumaa et al. (2010) Carbon inorganic dissolved Carbonate ion Carbonate system computation flag Carbon dioxide Chordata Coast and continental shelf Containers and aquaria (20-1000 L or < 1 m**2) EXP Experiment Fugacity of carbon dioxide (water) at sea surface temperature (wet air) Gadus morhua Growth/Morphology Identification Laboratory experiment Larvae dry mass Nekton North Atlantic OA-ICC Ocean Acidification International Coordination Centre Partial pressure of carbon dioxide standard deviation Partial pressure of carbon dioxide (water) at sea surface temperature (wet air) Pelagos pH Polar Registration number of species Salinity Sample optional label/labor no Single species Species Temperature water Treatment Type Uniform resource locator/link to reference Mittermayer, Felix H Stiasny, Martina H Clemmesen, Catriona Bayer, Till Puvanendran, Velmurugu Chierici, Melissa Jentoft, Sissel Reusch, Thorsten B H Seawater carbonate chemistry and dry weight of 5 and 15 days-post-hatch Atlantic cod larvae |
topic_facet |
Age Alkalinity total Animalia Aragonite saturation state Barents_Sea Bicarbonate ion Calcite saturation state Calculated using seacarb after Nisumaa et al. (2010) Carbon inorganic dissolved Carbonate ion Carbonate system computation flag Carbon dioxide Chordata Coast and continental shelf Containers and aquaria (20-1000 L or < 1 m**2) EXP Experiment Fugacity of carbon dioxide (water) at sea surface temperature (wet air) Gadus morhua Growth/Morphology Identification Laboratory experiment Larvae dry mass Nekton North Atlantic OA-ICC Ocean Acidification International Coordination Centre Partial pressure of carbon dioxide standard deviation Partial pressure of carbon dioxide (water) at sea surface temperature (wet air) Pelagos pH Polar Registration number of species Salinity Sample optional label/labor no Single species Species Temperature water Treatment Type Uniform resource locator/link to reference |
description |
Ocean acidification (OA), a direct consequence of increasing atmospheric CO2 concentration dissolving in ocean waters, is impacting many fish species. Little is known about the molecular mechanisms underlying the observed physiological impacts in fish. We used RNAseq to characterize the transcriptome of 3 different larval stages of Atlantic cod (Gadus morhua) exposed to simulated OA at levels (1179 µatm CO2) representing end-of-century predictions compared to controls (503 µatm CO2), which were shown to induce tissue damage and elevated mortality in G. morhua. Only few genes were differentially expressed in 6 and 13 days-post-hatching (dph) (3 and 16 genes, respectively), during a period when maximal mortality as a response to elevated pCO2 occurred. At 36 dph, 1413 genes were differentially expressed, most likely caused by developmental asynchrony between the treatment groups, with individuals under OA growing faster. A target gene analysis revealed only few genes of the universal and well-defined cellular stress response to be differentially expressed. We thus suggest that predicted ocean acidification levels constitute a “stealth stress” for early Atlantic cod larvae, with a rapid breakdown of cellular homeostasis leading to organismal death that was missed even with an 8-fold replication implemented in this study. |
format |
Dataset |
author |
Mittermayer, Felix H Stiasny, Martina H Clemmesen, Catriona Bayer, Till Puvanendran, Velmurugu Chierici, Melissa Jentoft, Sissel Reusch, Thorsten B H |
author_facet |
Mittermayer, Felix H Stiasny, Martina H Clemmesen, Catriona Bayer, Till Puvanendran, Velmurugu Chierici, Melissa Jentoft, Sissel Reusch, Thorsten B H |
author_sort |
Mittermayer, Felix H |
title |
Seawater carbonate chemistry and dry weight of 5 and 15 days-post-hatch Atlantic cod larvae |
title_short |
Seawater carbonate chemistry and dry weight of 5 and 15 days-post-hatch Atlantic cod larvae |
title_full |
Seawater carbonate chemistry and dry weight of 5 and 15 days-post-hatch Atlantic cod larvae |
title_fullStr |
Seawater carbonate chemistry and dry weight of 5 and 15 days-post-hatch Atlantic cod larvae |
title_full_unstemmed |
Seawater carbonate chemistry and dry weight of 5 and 15 days-post-hatch Atlantic cod larvae |
title_sort |
seawater carbonate chemistry and dry weight of 5 and 15 days-post-hatch atlantic cod larvae |
publisher |
PANGAEA |
publishDate |
2019 |
url |
https://doi.pangaea.de/10.1594/PANGAEA.911498 https://doi.org/10.1594/PANGAEA.911498 |
op_coverage |
LATITUDE: 70.250000 * LONGITUDE: 19.000000 * DATE/TIME START: 2014-03-01T00:00:00 * DATE/TIME END: 2014-03-31T00:00:00 |
long_lat |
ENVELOPE(19.000000,19.000000,70.250000,70.250000) |
genre |
atlantic cod Gadus morhua North Atlantic Ocean acidification |
genre_facet |
atlantic cod Gadus morhua North Atlantic Ocean acidification |
op_relation |
Mittermayer, Felix H; Stiasny, Martina H; Clemmesen, Catriona; Bayer, Till; Puvanendran, Velmurugu; Chierici, Melissa; Jentoft, Sissel; Reusch, Thorsten B H (2019): Transcriptome profiling reveals exposure to predicted end-of-century ocean acidification as a stealth stressor for Atlantic cod larvae. Scientific Reports, 9(1), https://doi.org/10.1038/s41598-019-52628-1 Stiasny, Martina H; Mittermayer, Felix H; Sswat, Michael; Voss, Rüdiger; Jutfelt, Fredrik; Chierici, Melissa; Puvanendran, Velmurugu; Mortensen, Atle; Reusch, Thorsten B H; Clemmesen, Catriona (2016): Survival of Atlantic cod larvae from the Barents Sea and the Western Baltic sea due to ocean acidification from two experiments : CO2 data [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.858615 Mittermayer, Felix H; Stiasny, Martina H; Clemmesen, Catriona; Bayer, Till; Puvanendran, Velmurugu; Chierici, Melissa; Jentoft, Sissel; Reusch, Thorsten B H (2018): Dry weight of 5 and 15 days-post-hatch Atlantic cod larvae in response to predicted end-of-century ocean acidification [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.884548 Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James C; Gentili, Bernard; Hagens, Mathilde; Hofmann, Andreas; Mueller, Jens-Daniel; Proye, Aurélien; Rae, James; Soetaert, Karline (2019): seacarb: seawater carbonate chemistry with R. R package version 3.2.12. https://CRAN.R-project.org/package=seacarb https://doi.pangaea.de/10.1594/PANGAEA.911498 https://doi.org/10.1594/PANGAEA.911498 |
op_rights |
CC-BY-4.0: Creative Commons Attribution 4.0 International Access constraints: unrestricted info:eu-repo/semantics/openAccess |
op_doi |
https://doi.org/10.1594/PANGAEA.91149810.1038/s41598-019-52628-110.1594/PANGAEA.85861510.1594/PANGAEA.884548 |
_version_ |
1810431727514943488 |
spelling |
ftpangaea:oai:pangaea.de:doi:10.1594/PANGAEA.911498 2024-09-15T17:55:26+00:00 Seawater carbonate chemistry and dry weight of 5 and 15 days-post-hatch Atlantic cod larvae Mittermayer, Felix H Stiasny, Martina H Clemmesen, Catriona Bayer, Till Puvanendran, Velmurugu Chierici, Melissa Jentoft, Sissel Reusch, Thorsten B H LATITUDE: 70.250000 * LONGITUDE: 19.000000 * DATE/TIME START: 2014-03-01T00:00:00 * DATE/TIME END: 2014-03-31T00:00:00 2019 text/tab-separated-values, 2496 data points https://doi.pangaea.de/10.1594/PANGAEA.911498 https://doi.org/10.1594/PANGAEA.911498 en eng PANGAEA Mittermayer, Felix H; Stiasny, Martina H; Clemmesen, Catriona; Bayer, Till; Puvanendran, Velmurugu; Chierici, Melissa; Jentoft, Sissel; Reusch, Thorsten B H (2019): Transcriptome profiling reveals exposure to predicted end-of-century ocean acidification as a stealth stressor for Atlantic cod larvae. Scientific Reports, 9(1), https://doi.org/10.1038/s41598-019-52628-1 Stiasny, Martina H; Mittermayer, Felix H; Sswat, Michael; Voss, Rüdiger; Jutfelt, Fredrik; Chierici, Melissa; Puvanendran, Velmurugu; Mortensen, Atle; Reusch, Thorsten B H; Clemmesen, Catriona (2016): Survival of Atlantic cod larvae from the Barents Sea and the Western Baltic sea due to ocean acidification from two experiments : CO2 data [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.858615 Mittermayer, Felix H; Stiasny, Martina H; Clemmesen, Catriona; Bayer, Till; Puvanendran, Velmurugu; Chierici, Melissa; Jentoft, Sissel; Reusch, Thorsten B H (2018): Dry weight of 5 and 15 days-post-hatch Atlantic cod larvae in response to predicted end-of-century ocean acidification [dataset]. PANGAEA, https://doi.org/10.1594/PANGAEA.884548 Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James C; Gentili, Bernard; Hagens, Mathilde; Hofmann, Andreas; Mueller, Jens-Daniel; Proye, Aurélien; Rae, James; Soetaert, Karline (2019): seacarb: seawater carbonate chemistry with R. R package version 3.2.12. https://CRAN.R-project.org/package=seacarb https://doi.pangaea.de/10.1594/PANGAEA.911498 https://doi.org/10.1594/PANGAEA.911498 CC-BY-4.0: Creative Commons Attribution 4.0 International Access constraints: unrestricted info:eu-repo/semantics/openAccess Age Alkalinity total Animalia Aragonite saturation state Barents_Sea Bicarbonate ion Calcite saturation state Calculated using seacarb after Nisumaa et al. (2010) Carbon inorganic dissolved Carbonate ion Carbonate system computation flag Carbon dioxide Chordata Coast and continental shelf Containers and aquaria (20-1000 L or < 1 m**2) EXP Experiment Fugacity of carbon dioxide (water) at sea surface temperature (wet air) Gadus morhua Growth/Morphology Identification Laboratory experiment Larvae dry mass Nekton North Atlantic OA-ICC Ocean Acidification International Coordination Centre Partial pressure of carbon dioxide standard deviation Partial pressure of carbon dioxide (water) at sea surface temperature (wet air) Pelagos pH Polar Registration number of species Salinity Sample optional label/labor no Single species Species Temperature water Treatment Type Uniform resource locator/link to reference dataset 2019 ftpangaea https://doi.org/10.1594/PANGAEA.91149810.1038/s41598-019-52628-110.1594/PANGAEA.85861510.1594/PANGAEA.884548 2024-07-24T02:31:34Z Ocean acidification (OA), a direct consequence of increasing atmospheric CO2 concentration dissolving in ocean waters, is impacting many fish species. Little is known about the molecular mechanisms underlying the observed physiological impacts in fish. We used RNAseq to characterize the transcriptome of 3 different larval stages of Atlantic cod (Gadus morhua) exposed to simulated OA at levels (1179 µatm CO2) representing end-of-century predictions compared to controls (503 µatm CO2), which were shown to induce tissue damage and elevated mortality in G. morhua. Only few genes were differentially expressed in 6 and 13 days-post-hatching (dph) (3 and 16 genes, respectively), during a period when maximal mortality as a response to elevated pCO2 occurred. At 36 dph, 1413 genes were differentially expressed, most likely caused by developmental asynchrony between the treatment groups, with individuals under OA growing faster. A target gene analysis revealed only few genes of the universal and well-defined cellular stress response to be differentially expressed. We thus suggest that predicted ocean acidification levels constitute a “stealth stress” for early Atlantic cod larvae, with a rapid breakdown of cellular homeostasis leading to organismal death that was missed even with an 8-fold replication implemented in this study. Dataset atlantic cod Gadus morhua North Atlantic Ocean acidification PANGAEA - Data Publisher for Earth & Environmental Science ENVELOPE(19.000000,19.000000,70.250000,70.250000) |