Seawater carbonate chemistry and growth rates, physiology, and geneexpression of Heterosigma akashiwo
Heterosigma akashiwo is a raphidophyte known for forming ichthyotoxic blooms. In order to predict the potential impacts of rising CO2 on H. akashiwo it is necessary to understand the factors influencing growth rates over a range of CO2 concentrations. Here we examined the physiology and gene express...
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Online Access: | https://doi.pangaea.de/10.1594/PANGAEA.911407 https://doi.org/10.1594/PANGAEA.911407 |
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ftpangaea:oai:pangaea.de:doi:10.1594/PANGAEA.911407 2024-09-15T18:28:22+00:00 Seawater carbonate chemistry and growth rates, physiology, and geneexpression of Heterosigma akashiwo Hennon, Gwenn M M Williamson, Olivia M Hernández Limón, María D Haley, Sheean T Dyhrman, Sonya T 2019 text/tab-separated-values, 611 data points https://doi.pangaea.de/10.1594/PANGAEA.911407 https://doi.org/10.1594/PANGAEA.911407 en eng PANGAEA Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James C; Gentili, Bernard; Hagens, Mathilde; Hofmann, Andreas; Mueller, Jens-Daniel; Proye, Aurélien; Rae, James; Soetaert, Karline (2019): seacarb: seawater carbonate chemistry with R. R package version 3.2.12. https://CRAN.R-project.org/package=seacarb https://doi.pangaea.de/10.1594/PANGAEA.911407 https://doi.org/10.1594/PANGAEA.911407 CC-BY-4.0: Creative Commons Attribution 4.0 International Access constraints: unrestricted info:eu-repo/semantics/openAccess Supplement to: Hennon, Gwenn M M; Williamson, Olivia M; Hernández Limón, María D; Haley, Sheean T; Dyhrman, Sonya T (2019): Non-linear Physiology and Gene Expression Responses of Harmful Alga Heterosigma akashiwo to Rising CO2. Protist, 170(1), 38-51, https://doi.org/10.1016/j.protis.2018.10.002 Alkalinity total standard deviation Aragonite saturation state Bicarbonate ion Biomass/Abundance/Elemental composition Bottles or small containers/Aquaria (<20 L) Calcite saturation state Calculated using CO2calc Calculated using seacarb after Nisumaa et al. (2010) Carbon inorganic dissolved Carbon/Nitrogen ratio Carbonate ion Carbonate system computation flag Carbon dioxide Carbon per cell Cell density Chlorophyll a Chlorophyll a per cell Chromista Experiment Fugacity of carbon dioxide (water) at sea surface temperature (wet air) Growth/Morphology Growth rate Heterosigma akashiwo Hydrogen peroxide Hydrogen peroxide per cell Identification Laboratory experiment Laboratory strains Nitrogen per cell Not applicable OA-ICC Ocean Acidification International Coordination Centre Ochrophyta Partial pressure of carbon dioxide Partial pressure of carbon dioxide (water) at sea surface temperature (wet air) Pelagos pH dataset 2019 ftpangaea https://doi.org/10.1594/PANGAEA.91140710.1016/j.protis.2018.10.002 2024-07-24T02:31:34Z Heterosigma akashiwo is a raphidophyte known for forming ichthyotoxic blooms. In order to predict the potential impacts of rising CO2 on H. akashiwo it is necessary to understand the factors influencing growth rates over a range of CO2 concentrations. Here we examined the physiology and gene expression response of H. akashiwo to concentrations from 200 to 1000 ppm CO2. Growth rate data were combined from this and previous studies and fit with a CO2 limitation-inhibition model that revealed an apparent growth optimum around 600–800 ppm CO2. Physiological changes included a significant increase in C:N ratio at 800 ppm CO2 and a significant decrease in hydrogen peroxide concentration at 1000 ppm. Whole transcriptome sequencing of H. akashiwo revealed sharp distinctions in metabolic pathway gene expression between 600 and 800 ppm CO2. Hierarchical clustering by co-expression identified groups of genes with significant correlations to CO2 and growth rate. Genes with significant differential expression with CO2 included carbon concentrating mechanism genes such as beta-carbonic anhydrases and a bicarbonate transporter, which may underpin shifts in physiology. Genes involved in cell motility were significantly changed by both elevated CO2 and growth rate, suggesting that future ocean conditions could modify swimming behavior in this species. Dataset Ocean acidification PANGAEA - Data Publisher for Earth & Environmental Science |
institution |
Open Polar |
collection |
PANGAEA - Data Publisher for Earth & Environmental Science |
op_collection_id |
ftpangaea |
language |
English |
topic |
Alkalinity total standard deviation Aragonite saturation state Bicarbonate ion Biomass/Abundance/Elemental composition Bottles or small containers/Aquaria (<20 L) Calcite saturation state Calculated using CO2calc Calculated using seacarb after Nisumaa et al. (2010) Carbon inorganic dissolved Carbon/Nitrogen ratio Carbonate ion Carbonate system computation flag Carbon dioxide Carbon per cell Cell density Chlorophyll a Chlorophyll a per cell Chromista Experiment Fugacity of carbon dioxide (water) at sea surface temperature (wet air) Growth/Morphology Growth rate Heterosigma akashiwo Hydrogen peroxide Hydrogen peroxide per cell Identification Laboratory experiment Laboratory strains Nitrogen per cell Not applicable OA-ICC Ocean Acidification International Coordination Centre Ochrophyta Partial pressure of carbon dioxide Partial pressure of carbon dioxide (water) at sea surface temperature (wet air) Pelagos pH |
spellingShingle |
Alkalinity total standard deviation Aragonite saturation state Bicarbonate ion Biomass/Abundance/Elemental composition Bottles or small containers/Aquaria (<20 L) Calcite saturation state Calculated using CO2calc Calculated using seacarb after Nisumaa et al. (2010) Carbon inorganic dissolved Carbon/Nitrogen ratio Carbonate ion Carbonate system computation flag Carbon dioxide Carbon per cell Cell density Chlorophyll a Chlorophyll a per cell Chromista Experiment Fugacity of carbon dioxide (water) at sea surface temperature (wet air) Growth/Morphology Growth rate Heterosigma akashiwo Hydrogen peroxide Hydrogen peroxide per cell Identification Laboratory experiment Laboratory strains Nitrogen per cell Not applicable OA-ICC Ocean Acidification International Coordination Centre Ochrophyta Partial pressure of carbon dioxide Partial pressure of carbon dioxide (water) at sea surface temperature (wet air) Pelagos pH Hennon, Gwenn M M Williamson, Olivia M Hernández Limón, María D Haley, Sheean T Dyhrman, Sonya T Seawater carbonate chemistry and growth rates, physiology, and geneexpression of Heterosigma akashiwo |
topic_facet |
Alkalinity total standard deviation Aragonite saturation state Bicarbonate ion Biomass/Abundance/Elemental composition Bottles or small containers/Aquaria (<20 L) Calcite saturation state Calculated using CO2calc Calculated using seacarb after Nisumaa et al. (2010) Carbon inorganic dissolved Carbon/Nitrogen ratio Carbonate ion Carbonate system computation flag Carbon dioxide Carbon per cell Cell density Chlorophyll a Chlorophyll a per cell Chromista Experiment Fugacity of carbon dioxide (water) at sea surface temperature (wet air) Growth/Morphology Growth rate Heterosigma akashiwo Hydrogen peroxide Hydrogen peroxide per cell Identification Laboratory experiment Laboratory strains Nitrogen per cell Not applicable OA-ICC Ocean Acidification International Coordination Centre Ochrophyta Partial pressure of carbon dioxide Partial pressure of carbon dioxide (water) at sea surface temperature (wet air) Pelagos pH |
description |
Heterosigma akashiwo is a raphidophyte known for forming ichthyotoxic blooms. In order to predict the potential impacts of rising CO2 on H. akashiwo it is necessary to understand the factors influencing growth rates over a range of CO2 concentrations. Here we examined the physiology and gene expression response of H. akashiwo to concentrations from 200 to 1000 ppm CO2. Growth rate data were combined from this and previous studies and fit with a CO2 limitation-inhibition model that revealed an apparent growth optimum around 600–800 ppm CO2. Physiological changes included a significant increase in C:N ratio at 800 ppm CO2 and a significant decrease in hydrogen peroxide concentration at 1000 ppm. Whole transcriptome sequencing of H. akashiwo revealed sharp distinctions in metabolic pathway gene expression between 600 and 800 ppm CO2. Hierarchical clustering by co-expression identified groups of genes with significant correlations to CO2 and growth rate. Genes with significant differential expression with CO2 included carbon concentrating mechanism genes such as beta-carbonic anhydrases and a bicarbonate transporter, which may underpin shifts in physiology. Genes involved in cell motility were significantly changed by both elevated CO2 and growth rate, suggesting that future ocean conditions could modify swimming behavior in this species. |
format |
Dataset |
author |
Hennon, Gwenn M M Williamson, Olivia M Hernández Limón, María D Haley, Sheean T Dyhrman, Sonya T |
author_facet |
Hennon, Gwenn M M Williamson, Olivia M Hernández Limón, María D Haley, Sheean T Dyhrman, Sonya T |
author_sort |
Hennon, Gwenn M M |
title |
Seawater carbonate chemistry and growth rates, physiology, and geneexpression of Heterosigma akashiwo |
title_short |
Seawater carbonate chemistry and growth rates, physiology, and geneexpression of Heterosigma akashiwo |
title_full |
Seawater carbonate chemistry and growth rates, physiology, and geneexpression of Heterosigma akashiwo |
title_fullStr |
Seawater carbonate chemistry and growth rates, physiology, and geneexpression of Heterosigma akashiwo |
title_full_unstemmed |
Seawater carbonate chemistry and growth rates, physiology, and geneexpression of Heterosigma akashiwo |
title_sort |
seawater carbonate chemistry and growth rates, physiology, and geneexpression of heterosigma akashiwo |
publisher |
PANGAEA |
publishDate |
2019 |
url |
https://doi.pangaea.de/10.1594/PANGAEA.911407 https://doi.org/10.1594/PANGAEA.911407 |
genre |
Ocean acidification |
genre_facet |
Ocean acidification |
op_source |
Supplement to: Hennon, Gwenn M M; Williamson, Olivia M; Hernández Limón, María D; Haley, Sheean T; Dyhrman, Sonya T (2019): Non-linear Physiology and Gene Expression Responses of Harmful Alga Heterosigma akashiwo to Rising CO2. Protist, 170(1), 38-51, https://doi.org/10.1016/j.protis.2018.10.002 |
op_relation |
Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James C; Gentili, Bernard; Hagens, Mathilde; Hofmann, Andreas; Mueller, Jens-Daniel; Proye, Aurélien; Rae, James; Soetaert, Karline (2019): seacarb: seawater carbonate chemistry with R. R package version 3.2.12. https://CRAN.R-project.org/package=seacarb https://doi.pangaea.de/10.1594/PANGAEA.911407 https://doi.org/10.1594/PANGAEA.911407 |
op_rights |
CC-BY-4.0: Creative Commons Attribution 4.0 International Access constraints: unrestricted info:eu-repo/semantics/openAccess |
op_doi |
https://doi.org/10.1594/PANGAEA.91140710.1016/j.protis.2018.10.002 |
_version_ |
1810469734357925888 |