Seawater carbonate chemistry and growth and chlorophyll, photochemical parameters, carbon fixation of diatom Phaeodactylum tricornutum

Elevated CO2 is leading to a decrease in pH in marine environments (ocean acidification [OA]), altering marine carbonate chemistry. OA can influence the metabolism of many marine organisms; however, no consensus has been reached on its effects on algal photosynthetic carbon fixation and primary prod...

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Bibliographic Details
Main Authors: Liu, Nana, Beardall, John, Gao, Kunshan
Format: Dataset
Language:English
Published: PANGAEA 2017
Subjects:
pH
Online Access:https://doi.pangaea.de/10.1594/PANGAEA.900658
https://doi.org/10.1594/PANGAEA.900658
id ftpangaea:oai:pangaea.de:doi:10.1594/PANGAEA.900658
record_format openpolar
spelling ftpangaea:oai:pangaea.de:doi:10.1594/PANGAEA.900658 2024-09-15T18:28:11+00:00 Seawater carbonate chemistry and growth and chlorophyll, photochemical parameters, carbon fixation of diatom Phaeodactylum tricornutum Liu, Nana Beardall, John Gao, Kunshan 2017 text/tab-separated-values, 6177 data points https://doi.pangaea.de/10.1594/PANGAEA.900658 https://doi.org/10.1594/PANGAEA.900658 en eng PANGAEA Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James C; Gentili, Bernard; Proye, Aurélien; Soetaert, Karline; Rae, James (2016): seacarb: seawater carbonate chemistry with R. R package version 3.1. https://cran.r-project.org/package=seacarb https://doi.pangaea.de/10.1594/PANGAEA.900658 https://doi.org/10.1594/PANGAEA.900658 CC-BY-4.0: Creative Commons Attribution 4.0 International Access constraints: unrestricted info:eu-repo/semantics/openAccess Supplement to: Liu, Nana; Beardall, John; Gao, Kunshan (2017): Elevated CO2 and associated seawater chemistry do not benefit a model diatom grown with increased availability of light. Aquatic Microbial Ecology, 79(2), 137-147, https://doi.org/10.3354/ame01820 Alkalinity total Aragonite saturation state Bicarbonate ion Bottles or small containers/Aquaria (<20 L) Calcite saturation state Calculated using CO2SYS Calculated using seacarb after Nisumaa et al. (2010) Carbon inorganic dissolved intracellular pool Carbonate ion Carbonate system computation flag Carbon dioxide Chromista Cumulative carbon fixation per cell Effective quantum yield Factor Fugacity of carbon dioxide (water) at sea surface temperature (wet air) Growth/Morphology Growth rate Identification Initial slope of photosynthesis/dissolved inorganic carbon Laboratory experiment Laboratory strains Light Light capturing capacity Light saturated maximum photosynthetic rate per cell Light saturation point Maximal electron transport rate relative Maximum photochemical quantum yield of photosystem II Not applicable OA-ICC Ocean Acidification International Coordination Centre Partial pressure of carbon dioxide (water) at sea surface temperature (wet air) Pelagos pH Phaeodactylum tricornutum Phytoplankton Primary production/Photosynthesis Registration number of species Salinity Single species Species Temperature dataset 2017 ftpangaea https://doi.org/10.1594/PANGAEA.90065810.3354/ame01820 2024-07-24T02:31:34Z Elevated CO2 is leading to a decrease in pH in marine environments (ocean acidification [OA]), altering marine carbonate chemistry. OA can influence the metabolism of many marine organisms; however, no consensus has been reached on its effects on algal photosynthetic carbon fixation and primary production. Here, we found that when the diatom Phaeodactylum tricornutum was grown under different pCO2 levels, it showed different responses to elevated pCO2 levels under growth-limiting (20 µmol photons/m**2/s, LL) compared with growth-saturating (200 µmol photons/m**2/s, HL) light levels. With pCO2 increased up to 950 µatm, growth rates and primary productivity increased, but in the HL cells, these parameters decreased significantly at higher concentrations up to 5000 µatm, while no difference in growth was observed with pCO2 for the LL cells. Elevated CO2 concentrations reduced the size of the intracellular dissolved inorganic carbon (DIC) pool by 81% and 60% under the LL and HL levels, respectively, with the corresponding photosynthetic affinity for DIC decreasing by 48% and 55%. Little photoinhibition was observed across all treatments. These results suggest that the decreased growth rates under higher CO2 levels in the HL cells were most likely due to acid stress. Low energy demand of growth and energy saving from the down-regulation of the CO2 concentrating mechanisms (CCM) minimized the effects of acid stress on the growth of the LL cells. These findings imply that OA treatment, except for down-regulating CCM, caused stress on the diatom, reflected in diminished C assimilation and growth rates. Dataset Ocean acidification PANGAEA - Data Publisher for Earth & Environmental Science
institution Open Polar
collection PANGAEA - Data Publisher for Earth & Environmental Science
op_collection_id ftpangaea
language English
topic Alkalinity
total
Aragonite saturation state
Bicarbonate ion
Bottles or small containers/Aquaria (<20 L)
Calcite saturation state
Calculated using CO2SYS
Calculated using seacarb after Nisumaa et al. (2010)
Carbon
inorganic
dissolved
intracellular pool
Carbonate ion
Carbonate system computation flag
Carbon dioxide
Chromista
Cumulative carbon fixation per cell
Effective quantum yield
Factor
Fugacity of carbon dioxide (water) at sea surface temperature (wet air)
Growth/Morphology
Growth rate
Identification
Initial slope of photosynthesis/dissolved inorganic carbon
Laboratory experiment
Laboratory strains
Light
Light capturing capacity
Light saturated maximum photosynthetic rate per cell
Light saturation point
Maximal electron transport rate
relative
Maximum photochemical quantum yield of photosystem II
Not applicable
OA-ICC
Ocean Acidification International Coordination Centre
Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)
Pelagos
pH
Phaeodactylum tricornutum
Phytoplankton
Primary production/Photosynthesis
Registration number of species
Salinity
Single species
Species
Temperature
spellingShingle Alkalinity
total
Aragonite saturation state
Bicarbonate ion
Bottles or small containers/Aquaria (<20 L)
Calcite saturation state
Calculated using CO2SYS
Calculated using seacarb after Nisumaa et al. (2010)
Carbon
inorganic
dissolved
intracellular pool
Carbonate ion
Carbonate system computation flag
Carbon dioxide
Chromista
Cumulative carbon fixation per cell
Effective quantum yield
Factor
Fugacity of carbon dioxide (water) at sea surface temperature (wet air)
Growth/Morphology
Growth rate
Identification
Initial slope of photosynthesis/dissolved inorganic carbon
Laboratory experiment
Laboratory strains
Light
Light capturing capacity
Light saturated maximum photosynthetic rate per cell
Light saturation point
Maximal electron transport rate
relative
Maximum photochemical quantum yield of photosystem II
Not applicable
OA-ICC
Ocean Acidification International Coordination Centre
Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)
Pelagos
pH
Phaeodactylum tricornutum
Phytoplankton
Primary production/Photosynthesis
Registration number of species
Salinity
Single species
Species
Temperature
Liu, Nana
Beardall, John
Gao, Kunshan
Seawater carbonate chemistry and growth and chlorophyll, photochemical parameters, carbon fixation of diatom Phaeodactylum tricornutum
topic_facet Alkalinity
total
Aragonite saturation state
Bicarbonate ion
Bottles or small containers/Aquaria (<20 L)
Calcite saturation state
Calculated using CO2SYS
Calculated using seacarb after Nisumaa et al. (2010)
Carbon
inorganic
dissolved
intracellular pool
Carbonate ion
Carbonate system computation flag
Carbon dioxide
Chromista
Cumulative carbon fixation per cell
Effective quantum yield
Factor
Fugacity of carbon dioxide (water) at sea surface temperature (wet air)
Growth/Morphology
Growth rate
Identification
Initial slope of photosynthesis/dissolved inorganic carbon
Laboratory experiment
Laboratory strains
Light
Light capturing capacity
Light saturated maximum photosynthetic rate per cell
Light saturation point
Maximal electron transport rate
relative
Maximum photochemical quantum yield of photosystem II
Not applicable
OA-ICC
Ocean Acidification International Coordination Centre
Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)
Pelagos
pH
Phaeodactylum tricornutum
Phytoplankton
Primary production/Photosynthesis
Registration number of species
Salinity
Single species
Species
Temperature
description Elevated CO2 is leading to a decrease in pH in marine environments (ocean acidification [OA]), altering marine carbonate chemistry. OA can influence the metabolism of many marine organisms; however, no consensus has been reached on its effects on algal photosynthetic carbon fixation and primary production. Here, we found that when the diatom Phaeodactylum tricornutum was grown under different pCO2 levels, it showed different responses to elevated pCO2 levels under growth-limiting (20 µmol photons/m**2/s, LL) compared with growth-saturating (200 µmol photons/m**2/s, HL) light levels. With pCO2 increased up to 950 µatm, growth rates and primary productivity increased, but in the HL cells, these parameters decreased significantly at higher concentrations up to 5000 µatm, while no difference in growth was observed with pCO2 for the LL cells. Elevated CO2 concentrations reduced the size of the intracellular dissolved inorganic carbon (DIC) pool by 81% and 60% under the LL and HL levels, respectively, with the corresponding photosynthetic affinity for DIC decreasing by 48% and 55%. Little photoinhibition was observed across all treatments. These results suggest that the decreased growth rates under higher CO2 levels in the HL cells were most likely due to acid stress. Low energy demand of growth and energy saving from the down-regulation of the CO2 concentrating mechanisms (CCM) minimized the effects of acid stress on the growth of the LL cells. These findings imply that OA treatment, except for down-regulating CCM, caused stress on the diatom, reflected in diminished C assimilation and growth rates.
format Dataset
author Liu, Nana
Beardall, John
Gao, Kunshan
author_facet Liu, Nana
Beardall, John
Gao, Kunshan
author_sort Liu, Nana
title Seawater carbonate chemistry and growth and chlorophyll, photochemical parameters, carbon fixation of diatom Phaeodactylum tricornutum
title_short Seawater carbonate chemistry and growth and chlorophyll, photochemical parameters, carbon fixation of diatom Phaeodactylum tricornutum
title_full Seawater carbonate chemistry and growth and chlorophyll, photochemical parameters, carbon fixation of diatom Phaeodactylum tricornutum
title_fullStr Seawater carbonate chemistry and growth and chlorophyll, photochemical parameters, carbon fixation of diatom Phaeodactylum tricornutum
title_full_unstemmed Seawater carbonate chemistry and growth and chlorophyll, photochemical parameters, carbon fixation of diatom Phaeodactylum tricornutum
title_sort seawater carbonate chemistry and growth and chlorophyll, photochemical parameters, carbon fixation of diatom phaeodactylum tricornutum
publisher PANGAEA
publishDate 2017
url https://doi.pangaea.de/10.1594/PANGAEA.900658
https://doi.org/10.1594/PANGAEA.900658
genre Ocean acidification
genre_facet Ocean acidification
op_source Supplement to: Liu, Nana; Beardall, John; Gao, Kunshan (2017): Elevated CO2 and associated seawater chemistry do not benefit a model diatom grown with increased availability of light. Aquatic Microbial Ecology, 79(2), 137-147, https://doi.org/10.3354/ame01820
op_relation Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James C; Gentili, Bernard; Proye, Aurélien; Soetaert, Karline; Rae, James (2016): seacarb: seawater carbonate chemistry with R. R package version 3.1. https://cran.r-project.org/package=seacarb
https://doi.pangaea.de/10.1594/PANGAEA.900658
https://doi.org/10.1594/PANGAEA.900658
op_rights CC-BY-4.0: Creative Commons Attribution 4.0 International
Access constraints: unrestricted
info:eu-repo/semantics/openAccess
op_doi https://doi.org/10.1594/PANGAEA.90065810.3354/ame01820
_version_ 1810469514538647552