Seawater carbonate chemistry and the microbiome of the octocoral Lobophytum pauciflorum
Bacteria associated with marine invertebrates are thought to have a range of important roles that benefit the host including production of compounds that may exclude pathogenic microorganisms and recycling of essential nutrients. This study characterised the microbiome of a gonochoric octocoral, Lob...
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ftpangaea:oai:pangaea.de:doi:10.1594/PANGAEA.893397 2024-09-15T18:28:22+00:00 Seawater carbonate chemistry and the microbiome of the octocoral Lobophytum pauciflorum Wessels, Wiebke Sprungala, Susanne Watson, Sue-Ann Miller, David J Bourne, David G LATITUDE: -18.560000 * LONGITUDE: 146.480000 * DATE/TIME START: 2013-08-01T00:00:00 * DATE/TIME END: 2014-10-30T00:00:00 2017 text/tab-separated-values, 1036 data points https://doi.pangaea.de/10.1594/PANGAEA.893397 https://doi.org/10.1594/PANGAEA.893397 en eng PANGAEA Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James C; Gentili, Bernard; Proye, Aurélien; Soetaert, Karline; Rae, James (2016): seacarb: seawater carbonate chemistry with R. R package version 3.1. https://cran.r-project.org/package=seacarb https://doi.pangaea.de/10.1594/PANGAEA.893397 https://doi.org/10.1594/PANGAEA.893397 CC-BY-3.0: Creative Commons Attribution 3.0 Unported Access constraints: unrestricted info:eu-repo/semantics/openAccess Supplement to: Wessels, Wiebke; Sprungala, Susanne; Watson, Sue-Ann; Miller, David J; Bourne, David G (2017): The microbiome of the octocoral Lobophytum pauciflorum: minor differences between sexes and resilience to short-term stress. FEMS Microbiology Ecology, 93(5), https://doi.org/10.1093/femsec/fix013 Alkalinity total standard deviation Alpha diversity Animalia Aragonite saturation state Benthic animals Benthos Bicarbonate ion Calcite saturation state Calculated using seacarb after Nisumaa et al. (2010) Carbon inorganic dissolved Carbonate ion Carbonate system computation flag Carbon dioxide Class Cnidaria Coast and continental shelf Community composition and diversity Containers and aquaria (20-1000 L or < 1 m**2) EXP Experiment Experiment duration Family Fugacity of carbon dioxide (water) at sea surface temperature (wet air) Laboratory experiment Lobophytum pauciflorum OA-ICC Ocean Acidification International Coordination Centre Operational taxonomic unit Orpheus_Pelorus_Island Partial pressure of carbon dioxide Partial pressure of carbon dioxide (water) at sea surface temperature (wet air) pH Registration number of species Salinity Sequence abundance dataset 2017 ftpangaea https://doi.org/10.1594/PANGAEA.89339710.1093/femsec/fix013 2024-07-24T02:31:34Z Bacteria associated with marine invertebrates are thought to have a range of important roles that benefit the host including production of compounds that may exclude pathogenic microorganisms and recycling of essential nutrients. This study characterised the microbiome of a gonochoric octocoral, Lobophytum pauciflorum, and investigated whether either sex or environmental stresses influenced the diversity of the associated microbiome through amplicon profiling of the bacterial 16S rRNA gene. Sequences affiliated to Spirochaetaceae and Endozoicimonaceae dominated the microbiome of L. pauciflorum, representing 43% and 21% of the community, respectively. Among the dominant class affiliations, no sex-specific differences were detected, though unassigned sequences were at a 2-fold higher relative abundance in samples from female individuals than from males. These potentially novel sequences contributed to observed differences between sexes as detected by a multivariate analysis at the OTU level. Exposing L. pauciflorum fragments to increased temperature (31°C), decreased pH (7.9) or both stressors simultaneously for 12 days did not significantly alter the microbial community, indicating that the soft coral microbiome is relatively resilient to short-term environmental stress. Dataset Ocean acidification PANGAEA - Data Publisher for Earth & Environmental Science ENVELOPE(146.480000,146.480000,-18.560000,-18.560000) |
institution |
Open Polar |
collection |
PANGAEA - Data Publisher for Earth & Environmental Science |
op_collection_id |
ftpangaea |
language |
English |
topic |
Alkalinity total standard deviation Alpha diversity Animalia Aragonite saturation state Benthic animals Benthos Bicarbonate ion Calcite saturation state Calculated using seacarb after Nisumaa et al. (2010) Carbon inorganic dissolved Carbonate ion Carbonate system computation flag Carbon dioxide Class Cnidaria Coast and continental shelf Community composition and diversity Containers and aquaria (20-1000 L or < 1 m**2) EXP Experiment Experiment duration Family Fugacity of carbon dioxide (water) at sea surface temperature (wet air) Laboratory experiment Lobophytum pauciflorum OA-ICC Ocean Acidification International Coordination Centre Operational taxonomic unit Orpheus_Pelorus_Island Partial pressure of carbon dioxide Partial pressure of carbon dioxide (water) at sea surface temperature (wet air) pH Registration number of species Salinity Sequence abundance |
spellingShingle |
Alkalinity total standard deviation Alpha diversity Animalia Aragonite saturation state Benthic animals Benthos Bicarbonate ion Calcite saturation state Calculated using seacarb after Nisumaa et al. (2010) Carbon inorganic dissolved Carbonate ion Carbonate system computation flag Carbon dioxide Class Cnidaria Coast and continental shelf Community composition and diversity Containers and aquaria (20-1000 L or < 1 m**2) EXP Experiment Experiment duration Family Fugacity of carbon dioxide (water) at sea surface temperature (wet air) Laboratory experiment Lobophytum pauciflorum OA-ICC Ocean Acidification International Coordination Centre Operational taxonomic unit Orpheus_Pelorus_Island Partial pressure of carbon dioxide Partial pressure of carbon dioxide (water) at sea surface temperature (wet air) pH Registration number of species Salinity Sequence abundance Wessels, Wiebke Sprungala, Susanne Watson, Sue-Ann Miller, David J Bourne, David G Seawater carbonate chemistry and the microbiome of the octocoral Lobophytum pauciflorum |
topic_facet |
Alkalinity total standard deviation Alpha diversity Animalia Aragonite saturation state Benthic animals Benthos Bicarbonate ion Calcite saturation state Calculated using seacarb after Nisumaa et al. (2010) Carbon inorganic dissolved Carbonate ion Carbonate system computation flag Carbon dioxide Class Cnidaria Coast and continental shelf Community composition and diversity Containers and aquaria (20-1000 L or < 1 m**2) EXP Experiment Experiment duration Family Fugacity of carbon dioxide (water) at sea surface temperature (wet air) Laboratory experiment Lobophytum pauciflorum OA-ICC Ocean Acidification International Coordination Centre Operational taxonomic unit Orpheus_Pelorus_Island Partial pressure of carbon dioxide Partial pressure of carbon dioxide (water) at sea surface temperature (wet air) pH Registration number of species Salinity Sequence abundance |
description |
Bacteria associated with marine invertebrates are thought to have a range of important roles that benefit the host including production of compounds that may exclude pathogenic microorganisms and recycling of essential nutrients. This study characterised the microbiome of a gonochoric octocoral, Lobophytum pauciflorum, and investigated whether either sex or environmental stresses influenced the diversity of the associated microbiome through amplicon profiling of the bacterial 16S rRNA gene. Sequences affiliated to Spirochaetaceae and Endozoicimonaceae dominated the microbiome of L. pauciflorum, representing 43% and 21% of the community, respectively. Among the dominant class affiliations, no sex-specific differences were detected, though unassigned sequences were at a 2-fold higher relative abundance in samples from female individuals than from males. These potentially novel sequences contributed to observed differences between sexes as detected by a multivariate analysis at the OTU level. Exposing L. pauciflorum fragments to increased temperature (31°C), decreased pH (7.9) or both stressors simultaneously for 12 days did not significantly alter the microbial community, indicating that the soft coral microbiome is relatively resilient to short-term environmental stress. |
format |
Dataset |
author |
Wessels, Wiebke Sprungala, Susanne Watson, Sue-Ann Miller, David J Bourne, David G |
author_facet |
Wessels, Wiebke Sprungala, Susanne Watson, Sue-Ann Miller, David J Bourne, David G |
author_sort |
Wessels, Wiebke |
title |
Seawater carbonate chemistry and the microbiome of the octocoral Lobophytum pauciflorum |
title_short |
Seawater carbonate chemistry and the microbiome of the octocoral Lobophytum pauciflorum |
title_full |
Seawater carbonate chemistry and the microbiome of the octocoral Lobophytum pauciflorum |
title_fullStr |
Seawater carbonate chemistry and the microbiome of the octocoral Lobophytum pauciflorum |
title_full_unstemmed |
Seawater carbonate chemistry and the microbiome of the octocoral Lobophytum pauciflorum |
title_sort |
seawater carbonate chemistry and the microbiome of the octocoral lobophytum pauciflorum |
publisher |
PANGAEA |
publishDate |
2017 |
url |
https://doi.pangaea.de/10.1594/PANGAEA.893397 https://doi.org/10.1594/PANGAEA.893397 |
op_coverage |
LATITUDE: -18.560000 * LONGITUDE: 146.480000 * DATE/TIME START: 2013-08-01T00:00:00 * DATE/TIME END: 2014-10-30T00:00:00 |
long_lat |
ENVELOPE(146.480000,146.480000,-18.560000,-18.560000) |
genre |
Ocean acidification |
genre_facet |
Ocean acidification |
op_source |
Supplement to: Wessels, Wiebke; Sprungala, Susanne; Watson, Sue-Ann; Miller, David J; Bourne, David G (2017): The microbiome of the octocoral Lobophytum pauciflorum: minor differences between sexes and resilience to short-term stress. FEMS Microbiology Ecology, 93(5), https://doi.org/10.1093/femsec/fix013 |
op_relation |
Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James C; Gentili, Bernard; Proye, Aurélien; Soetaert, Karline; Rae, James (2016): seacarb: seawater carbonate chemistry with R. R package version 3.1. https://cran.r-project.org/package=seacarb https://doi.pangaea.de/10.1594/PANGAEA.893397 https://doi.org/10.1594/PANGAEA.893397 |
op_rights |
CC-BY-3.0: Creative Commons Attribution 3.0 Unported Access constraints: unrestricted info:eu-repo/semantics/openAccess |
op_doi |
https://doi.org/10.1594/PANGAEA.89339710.1093/femsec/fix013 |
_version_ |
1810469717794619392 |