Seawater carbonate chemistry and the microbiome of the octocoral Lobophytum pauciflorum

Bacteria associated with marine invertebrates are thought to have a range of important roles that benefit the host including production of compounds that may exclude pathogenic microorganisms and recycling of essential nutrients. This study characterised the microbiome of a gonochoric octocoral, Lob...

Full description

Bibliographic Details
Main Authors: Wessels, Wiebke, Sprungala, Susanne, Watson, Sue-Ann, Miller, David J, Bourne, David G
Format: Dataset
Language:English
Published: PANGAEA 2017
Subjects:
EXP
pH
Online Access:https://doi.pangaea.de/10.1594/PANGAEA.893397
https://doi.org/10.1594/PANGAEA.893397
id ftpangaea:oai:pangaea.de:doi:10.1594/PANGAEA.893397
record_format openpolar
spelling ftpangaea:oai:pangaea.de:doi:10.1594/PANGAEA.893397 2024-09-15T18:28:22+00:00 Seawater carbonate chemistry and the microbiome of the octocoral Lobophytum pauciflorum Wessels, Wiebke Sprungala, Susanne Watson, Sue-Ann Miller, David J Bourne, David G LATITUDE: -18.560000 * LONGITUDE: 146.480000 * DATE/TIME START: 2013-08-01T00:00:00 * DATE/TIME END: 2014-10-30T00:00:00 2017 text/tab-separated-values, 1036 data points https://doi.pangaea.de/10.1594/PANGAEA.893397 https://doi.org/10.1594/PANGAEA.893397 en eng PANGAEA Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James C; Gentili, Bernard; Proye, Aurélien; Soetaert, Karline; Rae, James (2016): seacarb: seawater carbonate chemistry with R. R package version 3.1. https://cran.r-project.org/package=seacarb https://doi.pangaea.de/10.1594/PANGAEA.893397 https://doi.org/10.1594/PANGAEA.893397 CC-BY-3.0: Creative Commons Attribution 3.0 Unported Access constraints: unrestricted info:eu-repo/semantics/openAccess Supplement to: Wessels, Wiebke; Sprungala, Susanne; Watson, Sue-Ann; Miller, David J; Bourne, David G (2017): The microbiome of the octocoral Lobophytum pauciflorum: minor differences between sexes and resilience to short-term stress. FEMS Microbiology Ecology, 93(5), https://doi.org/10.1093/femsec/fix013 Alkalinity total standard deviation Alpha diversity Animalia Aragonite saturation state Benthic animals Benthos Bicarbonate ion Calcite saturation state Calculated using seacarb after Nisumaa et al. (2010) Carbon inorganic dissolved Carbonate ion Carbonate system computation flag Carbon dioxide Class Cnidaria Coast and continental shelf Community composition and diversity Containers and aquaria (20-1000 L or < 1 m**2) EXP Experiment Experiment duration Family Fugacity of carbon dioxide (water) at sea surface temperature (wet air) Laboratory experiment Lobophytum pauciflorum OA-ICC Ocean Acidification International Coordination Centre Operational taxonomic unit Orpheus_Pelorus_Island Partial pressure of carbon dioxide Partial pressure of carbon dioxide (water) at sea surface temperature (wet air) pH Registration number of species Salinity Sequence abundance dataset 2017 ftpangaea https://doi.org/10.1594/PANGAEA.89339710.1093/femsec/fix013 2024-07-24T02:31:34Z Bacteria associated with marine invertebrates are thought to have a range of important roles that benefit the host including production of compounds that may exclude pathogenic microorganisms and recycling of essential nutrients. This study characterised the microbiome of a gonochoric octocoral, Lobophytum pauciflorum, and investigated whether either sex or environmental stresses influenced the diversity of the associated microbiome through amplicon profiling of the bacterial 16S rRNA gene. Sequences affiliated to Spirochaetaceae and Endozoicimonaceae dominated the microbiome of L. pauciflorum, representing 43% and 21% of the community, respectively. Among the dominant class affiliations, no sex-specific differences were detected, though unassigned sequences were at a 2-fold higher relative abundance in samples from female individuals than from males. These potentially novel sequences contributed to observed differences between sexes as detected by a multivariate analysis at the OTU level. Exposing L. pauciflorum fragments to increased temperature (31°C), decreased pH (7.9) or both stressors simultaneously for 12 days did not significantly alter the microbial community, indicating that the soft coral microbiome is relatively resilient to short-term environmental stress. Dataset Ocean acidification PANGAEA - Data Publisher for Earth & Environmental Science ENVELOPE(146.480000,146.480000,-18.560000,-18.560000)
institution Open Polar
collection PANGAEA - Data Publisher for Earth & Environmental Science
op_collection_id ftpangaea
language English
topic Alkalinity
total
standard deviation
Alpha diversity
Animalia
Aragonite saturation state
Benthic animals
Benthos
Bicarbonate ion
Calcite saturation state
Calculated using seacarb after Nisumaa et al. (2010)
Carbon
inorganic
dissolved
Carbonate ion
Carbonate system computation flag
Carbon dioxide
Class
Cnidaria
Coast and continental shelf
Community composition and diversity
Containers and aquaria (20-1000 L or < 1 m**2)
EXP
Experiment
Experiment duration
Family
Fugacity of carbon dioxide (water) at sea surface temperature (wet air)
Laboratory experiment
Lobophytum pauciflorum
OA-ICC
Ocean Acidification International Coordination Centre
Operational taxonomic unit
Orpheus_Pelorus_Island
Partial pressure of carbon dioxide
Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)
pH
Registration number of species
Salinity
Sequence abundance
spellingShingle Alkalinity
total
standard deviation
Alpha diversity
Animalia
Aragonite saturation state
Benthic animals
Benthos
Bicarbonate ion
Calcite saturation state
Calculated using seacarb after Nisumaa et al. (2010)
Carbon
inorganic
dissolved
Carbonate ion
Carbonate system computation flag
Carbon dioxide
Class
Cnidaria
Coast and continental shelf
Community composition and diversity
Containers and aquaria (20-1000 L or < 1 m**2)
EXP
Experiment
Experiment duration
Family
Fugacity of carbon dioxide (water) at sea surface temperature (wet air)
Laboratory experiment
Lobophytum pauciflorum
OA-ICC
Ocean Acidification International Coordination Centre
Operational taxonomic unit
Orpheus_Pelorus_Island
Partial pressure of carbon dioxide
Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)
pH
Registration number of species
Salinity
Sequence abundance
Wessels, Wiebke
Sprungala, Susanne
Watson, Sue-Ann
Miller, David J
Bourne, David G
Seawater carbonate chemistry and the microbiome of the octocoral Lobophytum pauciflorum
topic_facet Alkalinity
total
standard deviation
Alpha diversity
Animalia
Aragonite saturation state
Benthic animals
Benthos
Bicarbonate ion
Calcite saturation state
Calculated using seacarb after Nisumaa et al. (2010)
Carbon
inorganic
dissolved
Carbonate ion
Carbonate system computation flag
Carbon dioxide
Class
Cnidaria
Coast and continental shelf
Community composition and diversity
Containers and aquaria (20-1000 L or < 1 m**2)
EXP
Experiment
Experiment duration
Family
Fugacity of carbon dioxide (water) at sea surface temperature (wet air)
Laboratory experiment
Lobophytum pauciflorum
OA-ICC
Ocean Acidification International Coordination Centre
Operational taxonomic unit
Orpheus_Pelorus_Island
Partial pressure of carbon dioxide
Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)
pH
Registration number of species
Salinity
Sequence abundance
description Bacteria associated with marine invertebrates are thought to have a range of important roles that benefit the host including production of compounds that may exclude pathogenic microorganisms and recycling of essential nutrients. This study characterised the microbiome of a gonochoric octocoral, Lobophytum pauciflorum, and investigated whether either sex or environmental stresses influenced the diversity of the associated microbiome through amplicon profiling of the bacterial 16S rRNA gene. Sequences affiliated to Spirochaetaceae and Endozoicimonaceae dominated the microbiome of L. pauciflorum, representing 43% and 21% of the community, respectively. Among the dominant class affiliations, no sex-specific differences were detected, though unassigned sequences were at a 2-fold higher relative abundance in samples from female individuals than from males. These potentially novel sequences contributed to observed differences between sexes as detected by a multivariate analysis at the OTU level. Exposing L. pauciflorum fragments to increased temperature (31°C), decreased pH (7.9) or both stressors simultaneously for 12 days did not significantly alter the microbial community, indicating that the soft coral microbiome is relatively resilient to short-term environmental stress.
format Dataset
author Wessels, Wiebke
Sprungala, Susanne
Watson, Sue-Ann
Miller, David J
Bourne, David G
author_facet Wessels, Wiebke
Sprungala, Susanne
Watson, Sue-Ann
Miller, David J
Bourne, David G
author_sort Wessels, Wiebke
title Seawater carbonate chemistry and the microbiome of the octocoral Lobophytum pauciflorum
title_short Seawater carbonate chemistry and the microbiome of the octocoral Lobophytum pauciflorum
title_full Seawater carbonate chemistry and the microbiome of the octocoral Lobophytum pauciflorum
title_fullStr Seawater carbonate chemistry and the microbiome of the octocoral Lobophytum pauciflorum
title_full_unstemmed Seawater carbonate chemistry and the microbiome of the octocoral Lobophytum pauciflorum
title_sort seawater carbonate chemistry and the microbiome of the octocoral lobophytum pauciflorum
publisher PANGAEA
publishDate 2017
url https://doi.pangaea.de/10.1594/PANGAEA.893397
https://doi.org/10.1594/PANGAEA.893397
op_coverage LATITUDE: -18.560000 * LONGITUDE: 146.480000 * DATE/TIME START: 2013-08-01T00:00:00 * DATE/TIME END: 2014-10-30T00:00:00
long_lat ENVELOPE(146.480000,146.480000,-18.560000,-18.560000)
genre Ocean acidification
genre_facet Ocean acidification
op_source Supplement to: Wessels, Wiebke; Sprungala, Susanne; Watson, Sue-Ann; Miller, David J; Bourne, David G (2017): The microbiome of the octocoral Lobophytum pauciflorum: minor differences between sexes and resilience to short-term stress. FEMS Microbiology Ecology, 93(5), https://doi.org/10.1093/femsec/fix013
op_relation Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James C; Gentili, Bernard; Proye, Aurélien; Soetaert, Karline; Rae, James (2016): seacarb: seawater carbonate chemistry with R. R package version 3.1. https://cran.r-project.org/package=seacarb
https://doi.pangaea.de/10.1594/PANGAEA.893397
https://doi.org/10.1594/PANGAEA.893397
op_rights CC-BY-3.0: Creative Commons Attribution 3.0 Unported
Access constraints: unrestricted
info:eu-repo/semantics/openAccess
op_doi https://doi.org/10.1594/PANGAEA.89339710.1093/femsec/fix013
_version_ 1810469717794619392