Microsatellite markers and ITS sequences to investigate Usnea antarctica and U. aurantiacoatra species pair

Lichens are symbiotic associations consisting of a fungal (mycobiont) and one or more photosynthetic (photobionts) partners and are the dominant component, and most important primary producers, of Antarctic terrestrial ecosystems. The most common lichens in the maritime Antarctic are Usnea antarctic...

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Main Author: Lagostina, Elisa
Format: Dataset
Language:English
Published: PANGAEA 2018
Subjects:
Online Access:https://doi.pangaea.de/10.1594/PANGAEA.892970
https://doi.org/10.1594/PANGAEA.892970
id ftpangaea:oai:pangaea.de:doi:10.1594/PANGAEA.892970
record_format openpolar
spelling ftpangaea:oai:pangaea.de:doi:10.1594/PANGAEA.892970 2023-05-15T14:04:56+02:00 Microsatellite markers and ITS sequences to investigate Usnea antarctica and U. aurantiacoatra species pair Lagostina, Elisa MEDIAN LATITUDE: -61.765230 * MEDIAN LONGITUDE: -57.231938 * SOUTH-BOUND LATITUDE: -62.252900 * WEST-BOUND LONGITUDE: -58.992750 * NORTH-BOUND LATITUDE: -61.216530 * EAST-BOUND LONGITUDE: -55.358780 * DATE/TIME START: 2015-12-18T00:00:00 * DATE/TIME END: 2016-04-08T00:00:00 2018-08-13 application/zip, 2 datasets https://doi.pangaea.de/10.1594/PANGAEA.892970 https://doi.org/10.1594/PANGAEA.892970 en eng PANGAEA Lagostina, Elisa; Dal Grande, Francesco; Ott, Sieglinde; Printzen, Christian (2017): Fungus-specific SSR markers in the Antarctic lichens Usnea antarctica and U. aurantiacoatra (Parmeliaceae, Ascomycota). Applications in Plant Sciences, 5(9), 1700054, https://doi.org/10.3732/apps.1700054 https://doi.pangaea.de/10.1594/PANGAEA.892970 https://doi.org/10.1594/PANGAEA.892970 CC-BY-3.0: Creative Commons Attribution 3.0 Unported Access constraints: unrestricted info:eu-repo/semantics/openAccess CC-BY Priority Programme 1158 Antarctic Research with Comparable Investigations in Arctic Sea Ice Areas SPP1158 Dataset 2018 ftpangaea https://doi.org/10.1594/PANGAEA.892970 https://doi.org/10.3732/apps.1700054 2023-01-20T07:34:11Z Lichens are symbiotic associations consisting of a fungal (mycobiont) and one or more photosynthetic (photobionts) partners and are the dominant component, and most important primary producers, of Antarctic terrestrial ecosystems. The most common lichens in the maritime Antarctic are Usnea antarctica and U. aurantiacoatra, a so-called "species pair" in which U. antarctica shows asexual reproduction and propagation via soredia and U. aurantiacoatra forms ascospores in apothecia. Previous molecular analyses were not able to unambiguously distinguish the two morphotypes as species. Therefore, the goal of this study was to find out whether fast-evolving SSR (Single Sequence Repeats) markers are able to separate morphotypes more clearly and help to clarify their taxonomy. We investigate 190 individuals from five mixed stands of both morphotypes collected in King George Island and Elephant Island (South Shetland Islands, Antarctica). Based on 23 microsatellite markers designed from sequenced genomes, discriminant analysis of principal components (DAPC), Bayesian clustering analysis and coalescent-based estimation of gene flow show clear evidence for the existence of two different species distinguishable by reproductive mode. We did not detect any statistical association between genetic clusters and three previously reported chemical races of each species. Dataset Antarc* Antarctic Antarctica Arctic Elephant Island King George Island Sea ice South Shetland Islands Usnea antarctica PANGAEA - Data Publisher for Earth & Environmental Science Arctic Antarctic King George Island South Shetland Islands Elephant Island ENVELOPE(-55.184,-55.184,-61.085,-61.085) ENVELOPE(-58.992750,-55.358780,-61.216530,-62.252900)
institution Open Polar
collection PANGAEA - Data Publisher for Earth & Environmental Science
op_collection_id ftpangaea
language English
topic Priority Programme 1158 Antarctic Research with Comparable Investigations in Arctic Sea Ice Areas
SPP1158
spellingShingle Priority Programme 1158 Antarctic Research with Comparable Investigations in Arctic Sea Ice Areas
SPP1158
Lagostina, Elisa
Microsatellite markers and ITS sequences to investigate Usnea antarctica and U. aurantiacoatra species pair
topic_facet Priority Programme 1158 Antarctic Research with Comparable Investigations in Arctic Sea Ice Areas
SPP1158
description Lichens are symbiotic associations consisting of a fungal (mycobiont) and one or more photosynthetic (photobionts) partners and are the dominant component, and most important primary producers, of Antarctic terrestrial ecosystems. The most common lichens in the maritime Antarctic are Usnea antarctica and U. aurantiacoatra, a so-called "species pair" in which U. antarctica shows asexual reproduction and propagation via soredia and U. aurantiacoatra forms ascospores in apothecia. Previous molecular analyses were not able to unambiguously distinguish the two morphotypes as species. Therefore, the goal of this study was to find out whether fast-evolving SSR (Single Sequence Repeats) markers are able to separate morphotypes more clearly and help to clarify their taxonomy. We investigate 190 individuals from five mixed stands of both morphotypes collected in King George Island and Elephant Island (South Shetland Islands, Antarctica). Based on 23 microsatellite markers designed from sequenced genomes, discriminant analysis of principal components (DAPC), Bayesian clustering analysis and coalescent-based estimation of gene flow show clear evidence for the existence of two different species distinguishable by reproductive mode. We did not detect any statistical association between genetic clusters and three previously reported chemical races of each species.
format Dataset
author Lagostina, Elisa
author_facet Lagostina, Elisa
author_sort Lagostina, Elisa
title Microsatellite markers and ITS sequences to investigate Usnea antarctica and U. aurantiacoatra species pair
title_short Microsatellite markers and ITS sequences to investigate Usnea antarctica and U. aurantiacoatra species pair
title_full Microsatellite markers and ITS sequences to investigate Usnea antarctica and U. aurantiacoatra species pair
title_fullStr Microsatellite markers and ITS sequences to investigate Usnea antarctica and U. aurantiacoatra species pair
title_full_unstemmed Microsatellite markers and ITS sequences to investigate Usnea antarctica and U. aurantiacoatra species pair
title_sort microsatellite markers and its sequences to investigate usnea antarctica and u. aurantiacoatra species pair
publisher PANGAEA
publishDate 2018
url https://doi.pangaea.de/10.1594/PANGAEA.892970
https://doi.org/10.1594/PANGAEA.892970
op_coverage MEDIAN LATITUDE: -61.765230 * MEDIAN LONGITUDE: -57.231938 * SOUTH-BOUND LATITUDE: -62.252900 * WEST-BOUND LONGITUDE: -58.992750 * NORTH-BOUND LATITUDE: -61.216530 * EAST-BOUND LONGITUDE: -55.358780 * DATE/TIME START: 2015-12-18T00:00:00 * DATE/TIME END: 2016-04-08T00:00:00
long_lat ENVELOPE(-55.184,-55.184,-61.085,-61.085)
ENVELOPE(-58.992750,-55.358780,-61.216530,-62.252900)
geographic Arctic
Antarctic
King George Island
South Shetland Islands
Elephant Island
geographic_facet Arctic
Antarctic
King George Island
South Shetland Islands
Elephant Island
genre Antarc*
Antarctic
Antarctica
Arctic
Elephant Island
King George Island
Sea ice
South Shetland Islands
Usnea antarctica
genre_facet Antarc*
Antarctic
Antarctica
Arctic
Elephant Island
King George Island
Sea ice
South Shetland Islands
Usnea antarctica
op_relation Lagostina, Elisa; Dal Grande, Francesco; Ott, Sieglinde; Printzen, Christian (2017): Fungus-specific SSR markers in the Antarctic lichens Usnea antarctica and U. aurantiacoatra (Parmeliaceae, Ascomycota). Applications in Plant Sciences, 5(9), 1700054, https://doi.org/10.3732/apps.1700054
https://doi.pangaea.de/10.1594/PANGAEA.892970
https://doi.org/10.1594/PANGAEA.892970
op_rights CC-BY-3.0: Creative Commons Attribution 3.0 Unported
Access constraints: unrestricted
info:eu-repo/semantics/openAccess
op_rightsnorm CC-BY
op_doi https://doi.org/10.1594/PANGAEA.892970
https://doi.org/10.3732/apps.1700054
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