Overview of sampling sites, site characteristics, and experiments to explore diversity and metabolism of the JTB255 clade
| Main Authors: | , , , , , , |
|---|---|
| Format: | Dataset |
| Language: | English |
| Published: |
PANGAEA
2018
|
| Subjects: | |
| Online Access: | https://doi.pangaea.de/10.1594/PANGAEA.884840 https://doi.org/10.1594/PANGAEA.884840 |
| id |
ftpangaea:oai:pangaea.de:doi:10.1594/PANGAEA.884840 |
|---|---|
| record_format |
openpolar |
| institution |
Open Polar |
| collection |
PANGAEA - Data Publisher for Earth & Environmental Science |
| op_collection_id |
ftpangaea |
| language |
English |
| topic |
Accession number genetics Analysis ANT-XXIX/8 ANT-XXV/3 ANT-XXVIII/3 Arctic Ocean ARK-XXIX/2.2 ARK-XXVII/3 ARK-XXVIII/2 ARK-XXX/1.2 AT26-23-05 AT26-23-12 BC Box corer Carbon organic total Chlorophyll a Comment CTD towed system CTD/Rosette CTD/Rosette with Underwater Vision Profiler CTD-RO CTD-RO_UVP CTD-twoyo Date/Time of event Depth bottom/max sediment/rock top/min EG_IV EGI Elevation of event Environment Event label GC GeoB12202-1 GeoB12202-2 GeoB18801-6 GeoB18805-18 GeoB18811-3 Grab Gravity corer HE432 HE432/01-6 |
| spellingShingle |
Accession number genetics Analysis ANT-XXIX/8 ANT-XXV/3 ANT-XXVIII/3 Arctic Ocean ARK-XXIX/2.2 ARK-XXVII/3 ARK-XXVIII/2 ARK-XXX/1.2 AT26-23-05 AT26-23-12 BC Box corer Carbon organic total Chlorophyll a Comment CTD towed system CTD/Rosette CTD/Rosette with Underwater Vision Profiler CTD-RO CTD-RO_UVP CTD-twoyo Date/Time of event Depth bottom/max sediment/rock top/min EG_IV EGI Elevation of event Environment Event label GC GeoB12202-1 GeoB12202-2 GeoB18801-6 GeoB18805-18 GeoB18811-3 Grab Gravity corer HE432 HE432/01-6 Hoffmann, Katy Bienhold, Christina Buttigieg, Pier Luigi Laso-Pérez, Rafael Rapp, Josephine Z Boetius, Antje Offre, Pierre Overview of sampling sites, site characteristics, and experiments to explore diversity and metabolism of the JTB255 clade |
| topic_facet |
Accession number genetics Analysis ANT-XXIX/8 ANT-XXV/3 ANT-XXVIII/3 Arctic Ocean ARK-XXIX/2.2 ARK-XXVII/3 ARK-XXVIII/2 ARK-XXX/1.2 AT26-23-05 AT26-23-12 BC Box corer Carbon organic total Chlorophyll a Comment CTD towed system CTD/Rosette CTD/Rosette with Underwater Vision Profiler CTD-RO CTD-RO_UVP CTD-twoyo Date/Time of event Depth bottom/max sediment/rock top/min EG_IV EGI Elevation of event Environment Event label GC GeoB12202-1 GeoB12202-2 GeoB18801-6 GeoB18805-18 GeoB18811-3 Grab Gravity corer HE432 HE432/01-6 |
| format |
Dataset |
| author |
Hoffmann, Katy Bienhold, Christina Buttigieg, Pier Luigi Laso-Pérez, Rafael Rapp, Josephine Z Boetius, Antje Offre, Pierre |
| author_facet |
Hoffmann, Katy Bienhold, Christina Buttigieg, Pier Luigi Laso-Pérez, Rafael Rapp, Josephine Z Boetius, Antje Offre, Pierre |
| author_sort |
Hoffmann, Katy |
| title |
Overview of sampling sites, site characteristics, and experiments to explore diversity and metabolism of the JTB255 clade |
| title_short |
Overview of sampling sites, site characteristics, and experiments to explore diversity and metabolism of the JTB255 clade |
| title_full |
Overview of sampling sites, site characteristics, and experiments to explore diversity and metabolism of the JTB255 clade |
| title_fullStr |
Overview of sampling sites, site characteristics, and experiments to explore diversity and metabolism of the JTB255 clade |
| title_full_unstemmed |
Overview of sampling sites, site characteristics, and experiments to explore diversity and metabolism of the JTB255 clade |
| title_sort |
overview of sampling sites, site characteristics, and experiments to explore diversity and metabolism of the jtb255 clade |
| publisher |
PANGAEA |
| publishDate |
2018 |
| url |
https://doi.pangaea.de/10.1594/PANGAEA.884840 https://doi.org/10.1594/PANGAEA.884840 |
| op_coverage |
MEDIAN LATITUDE: 21.556525 * MEDIAN LONGITUDE: -5.715977 * SOUTH-BOUND LATITUDE: -54.974670 * WEST-BOUND LONGITUDE: -104.266667 * NORTH-BOUND LATITUDE: 88.826750 * EAST-BOUND LONGITUDE: 63.166680 * DATE/TIME START: 2007-01-29T13:17:24 * DATE/TIME END: 2016-07-10T02:23:00 * MINIMUM DEPTH, sediment/rock: 0.000 m * MAXIMUM DEPTH, sediment/rock: 2.050 m |
| long_lat |
ENVELOPE(-104.266667,63.166680,88.826750,-54.974670) |
| geographic |
Arctic Arctic Ocean |
| geographic_facet |
Arctic Arctic Ocean |
| genre |
Arctic Arctic Arctic Ocean |
| genre_facet |
Arctic Arctic Arctic Ocean |
| op_relation |
https://doi.org/10.1594/PANGAEA.884844 Hoffmann, Katy; Bienhold, Christina; Buttigieg, Pier Luigi; Knittel, Katrin; Laso-Pérez, Rafael; Rapp, Josephine Z; Boetius, Antje; Offre, Pierre (2020): Diversity and metabolism of Woeseiales bacteria, global members of marine sediment communities. The ISME Journal, 14(4), 1042-1056, https://doi.org/10.1038/s41396-020-0588-4 Hoffmann, Katy; Bienhold, Christina; Buttigieg, Pier Luigi; Laso-Pérez, Rafael; Fadeev, Eduard; Rapp, Josephine Z; Boetius, Antje; Offre, Pierre (accepted): Amplicon sequencing of 16S rRNA of the JTB255 clade (Gammaproteobacteria), a global member of deep-sea sediment communities. European Nucleotide Archive (ENA), insdc:PRJEB20570 Bianchi, Daniele; Weber, Thomas; Kiko, Rainer; Deutsch, Curtis (2018): Global niche of marine anaerobic metabolisms expanded by particle microenvironments. Nature Geoscience, 11(4), 263-268, https://doi.org/10.1038/s41561-018-0081-0 Bienhold, Christina; Boetius, Antje (2013): Pigment concentration in surface sediments collected during POLARSTERN cruise ARK-XXVII/3 (IceArc). PANGAEA, https://doi.org/10.1594/PANGAEA.803195 Bienhold, Christina; Boetius, Antje: Total carbon and total organic carbon from the Arctic Ocean (MUC stations) during POLARSTERN cruise ARK-XXVII/3 from August-September 2012. PANGAEA, https://doi.pangaea.de/10.1594/PANGAEA.863153 Dyksma, Stefan; Bischof, Kerstin; Fuchs, Bernhard M; Hoffmann, Katy; Meier, Dimitri V; Meyerdierks, Anke; Pjevac, Petra; Probandt, David; Richter, Michael; Stepanauskas, Ramunas; Mussmann, Marc (2016): Ubiquitous Gammaproteobacteria dominate dark carbon fixation in coastal sediments. The ISME Journal, 10(8), 1939-1953, https://doi.org/10.1038/ISMEJ.2015.257 Hoffmann, Ralf; Braeckman, Ulrike; Wenzhöfer, Frank (2017): In situ measured oxygen profiles from station PS85/466-1 (HG IV) within the HAUSGARTEN area (Fram Strait) in 2014 (POLARSTERN cruise PS85). Alfred Wegener Institute, Helmholtz Centre for Polar and Marine Research, Bremerhaven, PANGAEA, https://doi.org/10.1594/PANGAEA.883556 Hoffmann, Ralf; Braeckman, Ulrike; Wenzhöfer, Frank (2017): In situ measured oxygen profiles from station PS85/476-1 (HG I) within the HAUSGARTEN area (Fram Strait) in 2014 (POLARSTERN cruise PS85). Alfred Wegener Institute, Helmholtz Centre for Polar and Marine Research, Bremerhaven, PANGAEA, https://doi.org/10.1594/PANGAEA.883554 Molari, Massimiliano; Boetius, Antje (2017): Geochemistry of sediment core PS81/606-1. PANGAEA, https://doi.org/10.1594/PANGAEA.881929 Molari, Massimiliano; Boetius, Antje (2017): Geochemistry of sediment core PS81/626-1. PANGAEA, https://doi.org/10.1594/PANGAEA.881930 Molari, Massimiliano; Boetius, Antje (2017): Geochemistry of sediment core PS81/639-1. PANGAEA, https://doi.org/10.1594/PANGAEA.881932 Molari, Massimiliano; Boetius, Antje (2017): Geochemistry of sediment core PS81/653-1. PANGAEA, https://doi.org/10.1594/PANGAEA.881935 Molari, Massimiliano; Boetius, Antje (2017): Geochemistry of sediment core PS81/656-1. PANGAEA, https://doi.org/10.1594/PANGAEA.881936 Molari, Massimiliano; Boetius, Antje (2017): Geochemistry of sediment core PS81/657-1. PANGAEA, https://doi.org/10.1594/PANGAEA.881937 Molari, Massimiliano; Boetius, Antje (2017): Geochemistry of sediment core PS81/659-1. PANGAEA, https://doi.org/10.1594/PANGAEA.881938 Molari, Massimiliano; Boetius, Antje (2017): Geochemistry of sediment core PS81/661-1. PANGAEA, https://doi.org/10.1594/PANGAEA.881939 Probandt, David; Knittel, Katrin; Tegetmeyer, Halina; Ahmerkamp, Soeren; Holtappels, Moritz; Amann, Rudolf I (2017): Permeability shapes bacterial communities in sublittoral surface sediments. Environmental Microbiology, 19(4), 1584-1599, https://doi.org/10.1111/1462-2920.13676 Ruff, S Emil; Biddle, Jennifer F; Teske, Andreas P; Knittel, Katrin; Boetius, Antje; Ramette, Alban (2015): Global dispersion and local diversification of the methane seep microbiome. Proceedings of the National Academy of Sciences, 112(13), 4015-4020, https://doi.org/10.1073/pnas.1421865112 Schewe, Ingo (2014): Station list and links to master tracks in different resolutions of POLARSTERN cruise PS85 (ARK-XXVIII/2), Bremerhaven - Tromsø, 2014-06-06 - 2014-07-03. Alfred Wegener Institute, Helmholtz Centre for Polar and Marine Research, Bremerhaven, PANGAEA, https://doi.org/10.1594/PANGAEA.834205 Schlindwein, Vera (2014): Station list and links to master tracks in different resolutions of POLARSTERN cruise ANT-XXIX/8, Cape Town - Cape Town, 2013-11-09 - 2013-12-16. Alfred Wegener Institute, Helmholtz Centre for Polar and Marine Research, Bremerhaven, PANGAEA, https://doi.org/10.1594/PANGAEA.829624 Sokoll, Sarah; Holtappels, Moritz; Lam, Phyllis; Collins, Gavin; Schlüter, Michael; Lavik, Gaute; Kuypers, Marcel MM (2012): Benthic nitrogen loss in the Arabian Sea off Pakistan. Frontiers in Microbiology, 3, https://doi.org/10.3389/fmicb.2012.00395 Soltwedel, Thomas (2015): Station list and links to master tracks in different resolutions of POLARSTERN cruise PS93.2 (ARK-XXIX/2.2), Tromsø - Tromsø, 2015-07-20 - 2015-08-14. Alfred Wegener Institute, Helmholtz Centre for Polar and Marine Research, Bremerhaven, PANGAEA, https://doi.org/10.1594/PANGAEA.848843 Soltwedel, Thomas (2016): Station list and links to master tracks in different resolutions of POLARSTERN cruise PS99.2 (ARK-XXX/1.2), Longyearbyen - Tromsø, 2016-06-23 - 2016-07-16. Alfred Wegener Institute, Helmholtz Centre for Polar and Marine Research, Bremerhaven, PANGAEA, https://doi.org/10.1594/PANGAEA.864237 Thiele, Stefan; Fuchs, Bernhard M; Amann, Rudolf; Iversen, Morten Hvitfeldt; Wommack, K Eric (2015): Colonization in the Photic Zone and Subsequent Changes during Sinking Determine Bacterial Community Composition in Marine Snow. Applied and Environmental Microbiology, 81(4), 1463-1471, https://doi.org/10.1128/AEM.02570-14 https://doi.pangaea.de/10.1594/PANGAEA.884840 https://doi.org/10.1594/PANGAEA.884840 |
| op_rights |
CC-BY-3.0: Creative Commons Attribution 3.0 Unported Access constraints: unrestricted info:eu-repo/semantics/openAccess |
| op_doi |
https://doi.org/10.1594/PANGAEA.88484010.1594/PANGAEA.88484410.1038/s41396-020-0588-410.1038/s41561-018-0081-010.1594/PANGAEA.80319510.1038/ISMEJ.2015.25710.1594/PANGAEA.88355610.1594/PANGAEA.88355410.1594/PANGAEA.88192910.1594/PANGAEA.88193010.1594/PANGA |
| _version_ |
1798838173324804096 |
| spelling |
ftpangaea:oai:pangaea.de:doi:10.1594/PANGAEA.884840 2024-05-12T07:57:46+00:00 Overview of sampling sites, site characteristics, and experiments to explore diversity and metabolism of the JTB255 clade Hoffmann, Katy Bienhold, Christina Buttigieg, Pier Luigi Laso-Pérez, Rafael Rapp, Josephine Z Boetius, Antje Offre, Pierre MEDIAN LATITUDE: 21.556525 * MEDIAN LONGITUDE: -5.715977 * SOUTH-BOUND LATITUDE: -54.974670 * WEST-BOUND LONGITUDE: -104.266667 * NORTH-BOUND LATITUDE: 88.826750 * EAST-BOUND LONGITUDE: 63.166680 * DATE/TIME START: 2007-01-29T13:17:24 * DATE/TIME END: 2016-07-10T02:23:00 * MINIMUM DEPTH, sediment/rock: 0.000 m * MAXIMUM DEPTH, sediment/rock: 2.050 m 2018 text/tab-separated-values, 926 data points https://doi.pangaea.de/10.1594/PANGAEA.884840 https://doi.org/10.1594/PANGAEA.884840 en eng PANGAEA https://doi.org/10.1594/PANGAEA.884844 Hoffmann, Katy; Bienhold, Christina; Buttigieg, Pier Luigi; Knittel, Katrin; Laso-Pérez, Rafael; Rapp, Josephine Z; Boetius, Antje; Offre, Pierre (2020): Diversity and metabolism of Woeseiales bacteria, global members of marine sediment communities. The ISME Journal, 14(4), 1042-1056, https://doi.org/10.1038/s41396-020-0588-4 Hoffmann, Katy; Bienhold, Christina; Buttigieg, Pier Luigi; Laso-Pérez, Rafael; Fadeev, Eduard; Rapp, Josephine Z; Boetius, Antje; Offre, Pierre (accepted): Amplicon sequencing of 16S rRNA of the JTB255 clade (Gammaproteobacteria), a global member of deep-sea sediment communities. European Nucleotide Archive (ENA), insdc:PRJEB20570 Bianchi, Daniele; Weber, Thomas; Kiko, Rainer; Deutsch, Curtis (2018): Global niche of marine anaerobic metabolisms expanded by particle microenvironments. Nature Geoscience, 11(4), 263-268, https://doi.org/10.1038/s41561-018-0081-0 Bienhold, Christina; Boetius, Antje (2013): Pigment concentration in surface sediments collected during POLARSTERN cruise ARK-XXVII/3 (IceArc). PANGAEA, https://doi.org/10.1594/PANGAEA.803195 Bienhold, Christina; Boetius, Antje: Total carbon and total organic carbon from the Arctic Ocean (MUC stations) during POLARSTERN cruise ARK-XXVII/3 from August-September 2012. PANGAEA, https://doi.pangaea.de/10.1594/PANGAEA.863153 Dyksma, Stefan; Bischof, Kerstin; Fuchs, Bernhard M; Hoffmann, Katy; Meier, Dimitri V; Meyerdierks, Anke; Pjevac, Petra; Probandt, David; Richter, Michael; Stepanauskas, Ramunas; Mussmann, Marc (2016): Ubiquitous Gammaproteobacteria dominate dark carbon fixation in coastal sediments. The ISME Journal, 10(8), 1939-1953, https://doi.org/10.1038/ISMEJ.2015.257 Hoffmann, Ralf; Braeckman, Ulrike; Wenzhöfer, Frank (2017): In situ measured oxygen profiles from station PS85/466-1 (HG IV) within the HAUSGARTEN area (Fram Strait) in 2014 (POLARSTERN cruise PS85). Alfred Wegener Institute, Helmholtz Centre for Polar and Marine Research, Bremerhaven, PANGAEA, https://doi.org/10.1594/PANGAEA.883556 Hoffmann, Ralf; Braeckman, Ulrike; Wenzhöfer, Frank (2017): In situ measured oxygen profiles from station PS85/476-1 (HG I) within the HAUSGARTEN area (Fram Strait) in 2014 (POLARSTERN cruise PS85). Alfred Wegener Institute, Helmholtz Centre for Polar and Marine Research, Bremerhaven, PANGAEA, https://doi.org/10.1594/PANGAEA.883554 Molari, Massimiliano; Boetius, Antje (2017): Geochemistry of sediment core PS81/606-1. PANGAEA, https://doi.org/10.1594/PANGAEA.881929 Molari, Massimiliano; Boetius, Antje (2017): Geochemistry of sediment core PS81/626-1. PANGAEA, https://doi.org/10.1594/PANGAEA.881930 Molari, Massimiliano; Boetius, Antje (2017): Geochemistry of sediment core PS81/639-1. PANGAEA, https://doi.org/10.1594/PANGAEA.881932 Molari, Massimiliano; Boetius, Antje (2017): Geochemistry of sediment core PS81/653-1. PANGAEA, https://doi.org/10.1594/PANGAEA.881935 Molari, Massimiliano; Boetius, Antje (2017): Geochemistry of sediment core PS81/656-1. PANGAEA, https://doi.org/10.1594/PANGAEA.881936 Molari, Massimiliano; Boetius, Antje (2017): Geochemistry of sediment core PS81/657-1. PANGAEA, https://doi.org/10.1594/PANGAEA.881937 Molari, Massimiliano; Boetius, Antje (2017): Geochemistry of sediment core PS81/659-1. PANGAEA, https://doi.org/10.1594/PANGAEA.881938 Molari, Massimiliano; Boetius, Antje (2017): Geochemistry of sediment core PS81/661-1. PANGAEA, https://doi.org/10.1594/PANGAEA.881939 Probandt, David; Knittel, Katrin; Tegetmeyer, Halina; Ahmerkamp, Soeren; Holtappels, Moritz; Amann, Rudolf I (2017): Permeability shapes bacterial communities in sublittoral surface sediments. Environmental Microbiology, 19(4), 1584-1599, https://doi.org/10.1111/1462-2920.13676 Ruff, S Emil; Biddle, Jennifer F; Teske, Andreas P; Knittel, Katrin; Boetius, Antje; Ramette, Alban (2015): Global dispersion and local diversification of the methane seep microbiome. Proceedings of the National Academy of Sciences, 112(13), 4015-4020, https://doi.org/10.1073/pnas.1421865112 Schewe, Ingo (2014): Station list and links to master tracks in different resolutions of POLARSTERN cruise PS85 (ARK-XXVIII/2), Bremerhaven - Tromsø, 2014-06-06 - 2014-07-03. Alfred Wegener Institute, Helmholtz Centre for Polar and Marine Research, Bremerhaven, PANGAEA, https://doi.org/10.1594/PANGAEA.834205 Schlindwein, Vera (2014): Station list and links to master tracks in different resolutions of POLARSTERN cruise ANT-XXIX/8, Cape Town - Cape Town, 2013-11-09 - 2013-12-16. Alfred Wegener Institute, Helmholtz Centre for Polar and Marine Research, Bremerhaven, PANGAEA, https://doi.org/10.1594/PANGAEA.829624 Sokoll, Sarah; Holtappels, Moritz; Lam, Phyllis; Collins, Gavin; Schlüter, Michael; Lavik, Gaute; Kuypers, Marcel MM (2012): Benthic nitrogen loss in the Arabian Sea off Pakistan. Frontiers in Microbiology, 3, https://doi.org/10.3389/fmicb.2012.00395 Soltwedel, Thomas (2015): Station list and links to master tracks in different resolutions of POLARSTERN cruise PS93.2 (ARK-XXIX/2.2), Tromsø - Tromsø, 2015-07-20 - 2015-08-14. Alfred Wegener Institute, Helmholtz Centre for Polar and Marine Research, Bremerhaven, PANGAEA, https://doi.org/10.1594/PANGAEA.848843 Soltwedel, Thomas (2016): Station list and links to master tracks in different resolutions of POLARSTERN cruise PS99.2 (ARK-XXX/1.2), Longyearbyen - Tromsø, 2016-06-23 - 2016-07-16. Alfred Wegener Institute, Helmholtz Centre for Polar and Marine Research, Bremerhaven, PANGAEA, https://doi.org/10.1594/PANGAEA.864237 Thiele, Stefan; Fuchs, Bernhard M; Amann, Rudolf; Iversen, Morten Hvitfeldt; Wommack, K Eric (2015): Colonization in the Photic Zone and Subsequent Changes during Sinking Determine Bacterial Community Composition in Marine Snow. Applied and Environmental Microbiology, 81(4), 1463-1471, https://doi.org/10.1128/AEM.02570-14 https://doi.pangaea.de/10.1594/PANGAEA.884840 https://doi.org/10.1594/PANGAEA.884840 CC-BY-3.0: Creative Commons Attribution 3.0 Unported Access constraints: unrestricted info:eu-repo/semantics/openAccess Accession number genetics Analysis ANT-XXIX/8 ANT-XXV/3 ANT-XXVIII/3 Arctic Ocean ARK-XXIX/2.2 ARK-XXVII/3 ARK-XXVIII/2 ARK-XXX/1.2 AT26-23-05 AT26-23-12 BC Box corer Carbon organic total Chlorophyll a Comment CTD towed system CTD/Rosette CTD/Rosette with Underwater Vision Profiler CTD-RO CTD-RO_UVP CTD-twoyo Date/Time of event Depth bottom/max sediment/rock top/min EG_IV EGI Elevation of event Environment Event label GC GeoB12202-1 GeoB12202-2 GeoB18801-6 GeoB18805-18 GeoB18811-3 Grab Gravity corer HE432 HE432/01-6 Dataset 2018 ftpangaea https://doi.org/10.1594/PANGAEA.88484010.1594/PANGAEA.88484410.1038/s41396-020-0588-410.1038/s41561-018-0081-010.1594/PANGAEA.80319510.1038/ISMEJ.2015.25710.1594/PANGAEA.88355610.1594/PANGAEA.88355410.1594/PANGAEA.88192910.1594/PANGAEA.88193010.1594/PANGA 2024-04-17T14:24:08Z Dataset Arctic Arctic Arctic Ocean PANGAEA - Data Publisher for Earth & Environmental Science Arctic Arctic Ocean ENVELOPE(-104.266667,63.166680,88.826750,-54.974670) |