Functional analysis of a tyrosinase gene involved in early larval shell biogenesis in Crassostrea angulata and its response to ocean acidification

The formation of the primary shell is a vital process in marine bivalves. Ocean acidification largely influences shell formation. It has been reported that enzymes involved in phenol oxidation, such as tyrosinase and phenoloxidases, participate in the formation of the periostracum. In the present st...

Full description

Bibliographic Details
Main Authors: Yang, Bingye, Pu, F, Li, lingling, You, W, Ke, C, Feng, Danqing
Format: Dataset
Language:English
Published: PANGAEA 2017
Subjects:
pH
Online Access:https://doi.pangaea.de/10.1594/PANGAEA.874743
https://doi.org/10.1594/PANGAEA.874743
id ftpangaea:oai:pangaea.de:doi:10.1594/PANGAEA.874743
record_format openpolar
spelling ftpangaea:oai:pangaea.de:doi:10.1594/PANGAEA.874743 2024-09-15T18:27:49+00:00 Functional analysis of a tyrosinase gene involved in early larval shell biogenesis in Crassostrea angulata and its response to ocean acidification Yang, Bingye Pu, F Li, lingling You, W Ke, C Feng, Danqing 2017 text/tab-separated-values, 252 data points https://doi.pangaea.de/10.1594/PANGAEA.874743 https://doi.org/10.1594/PANGAEA.874743 en eng PANGAEA Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James C; Gentili, Bernard; Proye, Aurélien; Soetaert, Karline; Rae, James (2016): seacarb: seawater carbonate chemistry with R. R package version 3.1. https://cran.r-project.org/package=seacarb https://doi.pangaea.de/10.1594/PANGAEA.874743 https://doi.org/10.1594/PANGAEA.874743 CC-BY-3.0: Creative Commons Attribution 3.0 Unported Access constraints: unrestricted info:eu-repo/semantics/openAccess Supplement to: Yang, Bingye; Pu, F; Li, lingling; You, W; Ke, C; Feng, Danqing (2017): Functional analysis of a tyrosinase gene involved in early larval shell biogenesis in Crassostrea angulata and its response to ocean acidification. Comparative Biochemistry and Physiology Part B: Biochemistry & Molecular Biology, 206, 8-15, https://doi.org/10.1016/j.cbpb.2017.01.006 Alkalinity total Animalia Aragonite saturation state Bicarbonate ion Calcite saturation state Calculated using seacarb after Nisumaa et al. (2010) Carbon inorganic dissolved Carbonate ion Carbonate system computation flag Carbon dioxide Coast and continental shelf Containers and aquaria (20-1000 L or < 1 m**2) Crassostrea angulata Fugacity of carbon dioxide (water) at sea surface temperature (wet air) Gene expression standard deviation Gene expression (incl. proteomics) Laboratory experiment Mollusca North Pacific OA-ICC Ocean Acidification International Coordination Centre Partial pressure of carbon dioxide (water) at sea surface temperature (wet air) Pelagos pH Registration number of species Salinity Single species Species Stage Temperate Temperature water Treatment Type Uniform resource locator/link to reference Zooplankton dataset 2017 ftpangaea https://doi.org/10.1594/PANGAEA.87474310.1016/j.cbpb.2017.01.006 2024-07-24T02:31:33Z The formation of the primary shell is a vital process in marine bivalves. Ocean acidification largely influences shell formation. It has been reported that enzymes involved in phenol oxidation, such as tyrosinase and phenoloxidases, participate in the formation of the periostracum. In the present study, we cloned a tyrosinase gene from Crassostrea angulata named Ca-tyrA1, and its potential function in early larval shell biogenesis was investigated. The Ca-tyrA1 gene has a full-length cDNA of 2430 bp in size, with an open reading frame of 1896 bp in size, which encodes a 631-amino acid protein that includes a 24-amino acid putative signal peptide. Quantitative reverse transcription-polymerase chain reaction (qRT-PCR) analysis revealed that Ca-tyrA1 transcription mainly occurs at the trochophore stage, and the Ca-tyrA1 mRNA levels in the 3000 ppm treatment group were significantly upregulated in the early D-veliger larvae. WMISH and electron scanning microscopy analyses showed that the expression of Ca-tyrA1 occurs at the gastrula stage, thereby sustaining the early D-veliger larvae, and the shape of its signal is saddle-like, similar to that observed under an electron scanning microscope. Furthermore, the RNA interference has shown that the treatment group has a higher deformity rate than that of the control, thereby indicating that Ca-tyrA1 participates in the biogenesis of the primary shell. In conclusion, and our results indicate that Ca-tyrA1 plays a vital role in the formation of the larval shell and participates in the response to larval shell damages in Crassostrea angulata that were induced by ocean acidification. Dataset Ocean acidification PANGAEA - Data Publisher for Earth & Environmental Science
institution Open Polar
collection PANGAEA - Data Publisher for Earth & Environmental Science
op_collection_id ftpangaea
language English
topic Alkalinity
total
Animalia
Aragonite saturation state
Bicarbonate ion
Calcite saturation state
Calculated using seacarb after Nisumaa et al. (2010)
Carbon
inorganic
dissolved
Carbonate ion
Carbonate system computation flag
Carbon dioxide
Coast and continental shelf
Containers and aquaria (20-1000 L or < 1 m**2)
Crassostrea angulata
Fugacity of carbon dioxide (water) at sea surface temperature (wet air)
Gene expression
standard deviation
Gene expression (incl. proteomics)
Laboratory experiment
Mollusca
North Pacific
OA-ICC
Ocean Acidification International Coordination Centre
Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)
Pelagos
pH
Registration number of species
Salinity
Single species
Species
Stage
Temperate
Temperature
water
Treatment
Type
Uniform resource locator/link to reference
Zooplankton
spellingShingle Alkalinity
total
Animalia
Aragonite saturation state
Bicarbonate ion
Calcite saturation state
Calculated using seacarb after Nisumaa et al. (2010)
Carbon
inorganic
dissolved
Carbonate ion
Carbonate system computation flag
Carbon dioxide
Coast and continental shelf
Containers and aquaria (20-1000 L or < 1 m**2)
Crassostrea angulata
Fugacity of carbon dioxide (water) at sea surface temperature (wet air)
Gene expression
standard deviation
Gene expression (incl. proteomics)
Laboratory experiment
Mollusca
North Pacific
OA-ICC
Ocean Acidification International Coordination Centre
Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)
Pelagos
pH
Registration number of species
Salinity
Single species
Species
Stage
Temperate
Temperature
water
Treatment
Type
Uniform resource locator/link to reference
Zooplankton
Yang, Bingye
Pu, F
Li, lingling
You, W
Ke, C
Feng, Danqing
Functional analysis of a tyrosinase gene involved in early larval shell biogenesis in Crassostrea angulata and its response to ocean acidification
topic_facet Alkalinity
total
Animalia
Aragonite saturation state
Bicarbonate ion
Calcite saturation state
Calculated using seacarb after Nisumaa et al. (2010)
Carbon
inorganic
dissolved
Carbonate ion
Carbonate system computation flag
Carbon dioxide
Coast and continental shelf
Containers and aquaria (20-1000 L or < 1 m**2)
Crassostrea angulata
Fugacity of carbon dioxide (water) at sea surface temperature (wet air)
Gene expression
standard deviation
Gene expression (incl. proteomics)
Laboratory experiment
Mollusca
North Pacific
OA-ICC
Ocean Acidification International Coordination Centre
Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)
Pelagos
pH
Registration number of species
Salinity
Single species
Species
Stage
Temperate
Temperature
water
Treatment
Type
Uniform resource locator/link to reference
Zooplankton
description The formation of the primary shell is a vital process in marine bivalves. Ocean acidification largely influences shell formation. It has been reported that enzymes involved in phenol oxidation, such as tyrosinase and phenoloxidases, participate in the formation of the periostracum. In the present study, we cloned a tyrosinase gene from Crassostrea angulata named Ca-tyrA1, and its potential function in early larval shell biogenesis was investigated. The Ca-tyrA1 gene has a full-length cDNA of 2430 bp in size, with an open reading frame of 1896 bp in size, which encodes a 631-amino acid protein that includes a 24-amino acid putative signal peptide. Quantitative reverse transcription-polymerase chain reaction (qRT-PCR) analysis revealed that Ca-tyrA1 transcription mainly occurs at the trochophore stage, and the Ca-tyrA1 mRNA levels in the 3000 ppm treatment group were significantly upregulated in the early D-veliger larvae. WMISH and electron scanning microscopy analyses showed that the expression of Ca-tyrA1 occurs at the gastrula stage, thereby sustaining the early D-veliger larvae, and the shape of its signal is saddle-like, similar to that observed under an electron scanning microscope. Furthermore, the RNA interference has shown that the treatment group has a higher deformity rate than that of the control, thereby indicating that Ca-tyrA1 participates in the biogenesis of the primary shell. In conclusion, and our results indicate that Ca-tyrA1 plays a vital role in the formation of the larval shell and participates in the response to larval shell damages in Crassostrea angulata that were induced by ocean acidification.
format Dataset
author Yang, Bingye
Pu, F
Li, lingling
You, W
Ke, C
Feng, Danqing
author_facet Yang, Bingye
Pu, F
Li, lingling
You, W
Ke, C
Feng, Danqing
author_sort Yang, Bingye
title Functional analysis of a tyrosinase gene involved in early larval shell biogenesis in Crassostrea angulata and its response to ocean acidification
title_short Functional analysis of a tyrosinase gene involved in early larval shell biogenesis in Crassostrea angulata and its response to ocean acidification
title_full Functional analysis of a tyrosinase gene involved in early larval shell biogenesis in Crassostrea angulata and its response to ocean acidification
title_fullStr Functional analysis of a tyrosinase gene involved in early larval shell biogenesis in Crassostrea angulata and its response to ocean acidification
title_full_unstemmed Functional analysis of a tyrosinase gene involved in early larval shell biogenesis in Crassostrea angulata and its response to ocean acidification
title_sort functional analysis of a tyrosinase gene involved in early larval shell biogenesis in crassostrea angulata and its response to ocean acidification
publisher PANGAEA
publishDate 2017
url https://doi.pangaea.de/10.1594/PANGAEA.874743
https://doi.org/10.1594/PANGAEA.874743
genre Ocean acidification
genre_facet Ocean acidification
op_source Supplement to: Yang, Bingye; Pu, F; Li, lingling; You, W; Ke, C; Feng, Danqing (2017): Functional analysis of a tyrosinase gene involved in early larval shell biogenesis in Crassostrea angulata and its response to ocean acidification. Comparative Biochemistry and Physiology Part B: Biochemistry & Molecular Biology, 206, 8-15, https://doi.org/10.1016/j.cbpb.2017.01.006
op_relation Gattuso, Jean-Pierre; Epitalon, Jean-Marie; Lavigne, Héloïse; Orr, James C; Gentili, Bernard; Proye, Aurélien; Soetaert, Karline; Rae, James (2016): seacarb: seawater carbonate chemistry with R. R package version 3.1. https://cran.r-project.org/package=seacarb
https://doi.pangaea.de/10.1594/PANGAEA.874743
https://doi.org/10.1594/PANGAEA.874743
op_rights CC-BY-3.0: Creative Commons Attribution 3.0 Unported
Access constraints: unrestricted
info:eu-repo/semantics/openAccess
op_doi https://doi.org/10.1594/PANGAEA.87474310.1016/j.cbpb.2017.01.006
_version_ 1810469081174769664