Collecting information and identification of New England Seamount Geodia species

We report the first records of the sponge genus Geodia (Demospongiae, Tetractinellida, Geodiidae) from the New England Seamounts and Muir Seamount, at lower bathyal depths. Nine specimens collected between 2000 and 2005 belong to two boreal species (Geodia macandrewii and Geodia barretti) and a temp...

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Bibliographic Details
Main Authors: Cárdenas, Paco, Moore, Jon A
Format: Dataset
Language:English
Published: PANGAEA 2016
Subjects:
OT
ROV
Online Access:https://doi.pangaea.de/10.1594/PANGAEA.867276
https://doi.org/10.1594/PANGAEA.867276
id ftpangaea:oai:pangaea.de:doi:10.1594/PANGAEA.867276
record_format openpolar
spelling ftpangaea:oai:pangaea.de:doi:10.1594/PANGAEA.867276 2023-05-15T17:31:39+02:00 Collecting information and identification of New England Seamount Geodia species Cárdenas, Paco Moore, Jon A MEDIAN LATITUDE: 39.622396 * MEDIAN LONGITUDE: -56.543543 * SOUTH-BOUND LATITUDE: 33.753300 * WEST-BOUND LONGITUDE: -67.480500 * NORTH-BOUND LATITUDE: 64.710000 * EAST-BOUND LONGITUDE: 10.790000 * DATE/TIME START: 1855-08-06T00:00:00 * DATE/TIME END: 2005-10-28T00:00:00 * MINIMUM ELEVATION: -2838.0 m * MAXIMUM ELEVATION: 2008.0 m 2016-10-27 text/tab-separated-values, 95 data points https://doi.pangaea.de/10.1594/PANGAEA.867276 https://doi.org/10.1594/PANGAEA.867276 en eng PANGAEA https://doi.pangaea.de/10.1594/PANGAEA.867276 https://doi.org/10.1594/PANGAEA.867276 CC-BY-3.0: Creative Commons Attribution 3.0 Unported Access constraints: unrestricted info:eu-repo/semantics/openAccess CC-BY Supplement to: Cárdenas, Paco; Moore, Jon A (2017): First records of Geodia demosponges from the New England seamounts, an opportunity to test the use of DNA mini-barcodes on museum specimens. Marine Biodiversity, 12 pp, https://doi.org/10.1007/s12526-017-0775-3 Alv_3886 Alv_3904 ALV-3885 ALV-3887 ALV-4162 ALVIN Area/locality AT07-35 AT08-01 AT12-01 Atlantis (1997) Campaign Collection DATE/TIME DE00-11 DE00-11_17 DE02-06 DE02-06_46 Deep-sea Sponge Grounds Ecosystems of the North Atlantic Delaware II Description Event label Identification Investigator LATITUDE LONGITUDE New England Mountains North Atlantic Ocean Norway OT Otter trawl RB04-04_MAN708 RB200404B Remote operated vehicle Ronald H. Brown ROV Sample comment Sample elevation Species SponGES Submersible Alvin Treatment Uniform resource locator/link to metadata file Vikna_Is Dataset 2016 ftpangaea https://doi.org/10.1594/PANGAEA.867276 https://doi.org/10.1007/s12526-017-0775-3 2023-01-20T09:07:58Z We report the first records of the sponge genus Geodia (Demospongiae, Tetractinellida, Geodiidae) from the New England Seamounts and Muir Seamount, at lower bathyal depths. Nine specimens collected between 2000 and 2005 belong to two boreal species (Geodia macandrewii and Geodia barretti) and a temperate species (Geodia megastrella). These records extend the distributions of these deep-sea amphi-Atlantic species to the west. Most of these specimens were originally fixed in formalin, which substantially degraded the DNA. We nonetheless managed to sequence two cytochrome c oxidase subunit I (COI) mini-barcodes: the universal mini-barcode at the 5' end of the Folmer barcode (130 bp) and a newly proposed mini-barcode at the 3' end of the Folmer barcode (296 bp). These mini-barcodes unambiguously confirmed our identifications. As an additional test, we also successfully sequenced these two mini-barcodes from the holotype of G. barretti, collected in 1855. We conclude by advocating the use of mini-barcodes on formalin-fixed or old specimens with degraded DNA. Dataset North Atlantic PANGAEA - Data Publisher for Earth & Environmental Science Folmer ENVELOPE(12.601,12.601,64.648,64.648) Norway ENVELOPE(-67.480500,10.790000,64.710000,33.753300)
institution Open Polar
collection PANGAEA - Data Publisher for Earth & Environmental Science
op_collection_id ftpangaea
language English
topic Alv_3886
Alv_3904
ALV-3885
ALV-3887
ALV-4162
ALVIN
Area/locality
AT07-35
AT08-01
AT12-01
Atlantis (1997)
Campaign
Collection
DATE/TIME
DE00-11
DE00-11_17
DE02-06
DE02-06_46
Deep-sea Sponge Grounds Ecosystems of the North Atlantic
Delaware II
Description
Event label
Identification
Investigator
LATITUDE
LONGITUDE
New England Mountains
North Atlantic Ocean
Norway
OT
Otter trawl
RB04-04_MAN708
RB200404B
Remote operated vehicle
Ronald H. Brown
ROV
Sample comment
Sample elevation
Species
SponGES
Submersible Alvin
Treatment
Uniform resource locator/link to metadata file
Vikna_Is
spellingShingle Alv_3886
Alv_3904
ALV-3885
ALV-3887
ALV-4162
ALVIN
Area/locality
AT07-35
AT08-01
AT12-01
Atlantis (1997)
Campaign
Collection
DATE/TIME
DE00-11
DE00-11_17
DE02-06
DE02-06_46
Deep-sea Sponge Grounds Ecosystems of the North Atlantic
Delaware II
Description
Event label
Identification
Investigator
LATITUDE
LONGITUDE
New England Mountains
North Atlantic Ocean
Norway
OT
Otter trawl
RB04-04_MAN708
RB200404B
Remote operated vehicle
Ronald H. Brown
ROV
Sample comment
Sample elevation
Species
SponGES
Submersible Alvin
Treatment
Uniform resource locator/link to metadata file
Vikna_Is
Cárdenas, Paco
Moore, Jon A
Collecting information and identification of New England Seamount Geodia species
topic_facet Alv_3886
Alv_3904
ALV-3885
ALV-3887
ALV-4162
ALVIN
Area/locality
AT07-35
AT08-01
AT12-01
Atlantis (1997)
Campaign
Collection
DATE/TIME
DE00-11
DE00-11_17
DE02-06
DE02-06_46
Deep-sea Sponge Grounds Ecosystems of the North Atlantic
Delaware II
Description
Event label
Identification
Investigator
LATITUDE
LONGITUDE
New England Mountains
North Atlantic Ocean
Norway
OT
Otter trawl
RB04-04_MAN708
RB200404B
Remote operated vehicle
Ronald H. Brown
ROV
Sample comment
Sample elevation
Species
SponGES
Submersible Alvin
Treatment
Uniform resource locator/link to metadata file
Vikna_Is
description We report the first records of the sponge genus Geodia (Demospongiae, Tetractinellida, Geodiidae) from the New England Seamounts and Muir Seamount, at lower bathyal depths. Nine specimens collected between 2000 and 2005 belong to two boreal species (Geodia macandrewii and Geodia barretti) and a temperate species (Geodia megastrella). These records extend the distributions of these deep-sea amphi-Atlantic species to the west. Most of these specimens were originally fixed in formalin, which substantially degraded the DNA. We nonetheless managed to sequence two cytochrome c oxidase subunit I (COI) mini-barcodes: the universal mini-barcode at the 5' end of the Folmer barcode (130 bp) and a newly proposed mini-barcode at the 3' end of the Folmer barcode (296 bp). These mini-barcodes unambiguously confirmed our identifications. As an additional test, we also successfully sequenced these two mini-barcodes from the holotype of G. barretti, collected in 1855. We conclude by advocating the use of mini-barcodes on formalin-fixed or old specimens with degraded DNA.
format Dataset
author Cárdenas, Paco
Moore, Jon A
author_facet Cárdenas, Paco
Moore, Jon A
author_sort Cárdenas, Paco
title Collecting information and identification of New England Seamount Geodia species
title_short Collecting information and identification of New England Seamount Geodia species
title_full Collecting information and identification of New England Seamount Geodia species
title_fullStr Collecting information and identification of New England Seamount Geodia species
title_full_unstemmed Collecting information and identification of New England Seamount Geodia species
title_sort collecting information and identification of new england seamount geodia species
publisher PANGAEA
publishDate 2016
url https://doi.pangaea.de/10.1594/PANGAEA.867276
https://doi.org/10.1594/PANGAEA.867276
op_coverage MEDIAN LATITUDE: 39.622396 * MEDIAN LONGITUDE: -56.543543 * SOUTH-BOUND LATITUDE: 33.753300 * WEST-BOUND LONGITUDE: -67.480500 * NORTH-BOUND LATITUDE: 64.710000 * EAST-BOUND LONGITUDE: 10.790000 * DATE/TIME START: 1855-08-06T00:00:00 * DATE/TIME END: 2005-10-28T00:00:00 * MINIMUM ELEVATION: -2838.0 m * MAXIMUM ELEVATION: 2008.0 m
long_lat ENVELOPE(12.601,12.601,64.648,64.648)
ENVELOPE(-67.480500,10.790000,64.710000,33.753300)
geographic Folmer
Norway
geographic_facet Folmer
Norway
genre North Atlantic
genre_facet North Atlantic
op_source Supplement to: Cárdenas, Paco; Moore, Jon A (2017): First records of Geodia demosponges from the New England seamounts, an opportunity to test the use of DNA mini-barcodes on museum specimens. Marine Biodiversity, 12 pp, https://doi.org/10.1007/s12526-017-0775-3
op_relation https://doi.pangaea.de/10.1594/PANGAEA.867276
https://doi.org/10.1594/PANGAEA.867276
op_rights CC-BY-3.0: Creative Commons Attribution 3.0 Unported
Access constraints: unrestricted
info:eu-repo/semantics/openAccess
op_rightsnorm CC-BY
op_doi https://doi.org/10.1594/PANGAEA.867276
https://doi.org/10.1007/s12526-017-0775-3
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