Collecting information and identification of New England Seamount Geodia species
We report the first records of the sponge genus Geodia (Demospongiae, Tetractinellida, Geodiidae) from the New England Seamounts and Muir Seamount, at lower bathyal depths. Nine specimens collected between 2000 and 2005 belong to two boreal species (Geodia macandrewii and Geodia barretti) and a temp...
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ftpangaea:oai:pangaea.de:doi:10.1594/PANGAEA.867276 2023-05-15T17:31:39+02:00 Collecting information and identification of New England Seamount Geodia species Cárdenas, Paco Moore, Jon A MEDIAN LATITUDE: 39.622396 * MEDIAN LONGITUDE: -56.543543 * SOUTH-BOUND LATITUDE: 33.753300 * WEST-BOUND LONGITUDE: -67.480500 * NORTH-BOUND LATITUDE: 64.710000 * EAST-BOUND LONGITUDE: 10.790000 * DATE/TIME START: 1855-08-06T00:00:00 * DATE/TIME END: 2005-10-28T00:00:00 * MINIMUM ELEVATION: -2838.0 m * MAXIMUM ELEVATION: 2008.0 m 2016-10-27 text/tab-separated-values, 95 data points https://doi.pangaea.de/10.1594/PANGAEA.867276 https://doi.org/10.1594/PANGAEA.867276 en eng PANGAEA https://doi.pangaea.de/10.1594/PANGAEA.867276 https://doi.org/10.1594/PANGAEA.867276 CC-BY-3.0: Creative Commons Attribution 3.0 Unported Access constraints: unrestricted info:eu-repo/semantics/openAccess CC-BY Supplement to: Cárdenas, Paco; Moore, Jon A (2017): First records of Geodia demosponges from the New England seamounts, an opportunity to test the use of DNA mini-barcodes on museum specimens. Marine Biodiversity, 12 pp, https://doi.org/10.1007/s12526-017-0775-3 Alv_3886 Alv_3904 ALV-3885 ALV-3887 ALV-4162 ALVIN Area/locality AT07-35 AT08-01 AT12-01 Atlantis (1997) Campaign Collection DATE/TIME DE00-11 DE00-11_17 DE02-06 DE02-06_46 Deep-sea Sponge Grounds Ecosystems of the North Atlantic Delaware II Description Event label Identification Investigator LATITUDE LONGITUDE New England Mountains North Atlantic Ocean Norway OT Otter trawl RB04-04_MAN708 RB200404B Remote operated vehicle Ronald H. Brown ROV Sample comment Sample elevation Species SponGES Submersible Alvin Treatment Uniform resource locator/link to metadata file Vikna_Is Dataset 2016 ftpangaea https://doi.org/10.1594/PANGAEA.867276 https://doi.org/10.1007/s12526-017-0775-3 2023-01-20T09:07:58Z We report the first records of the sponge genus Geodia (Demospongiae, Tetractinellida, Geodiidae) from the New England Seamounts and Muir Seamount, at lower bathyal depths. Nine specimens collected between 2000 and 2005 belong to two boreal species (Geodia macandrewii and Geodia barretti) and a temperate species (Geodia megastrella). These records extend the distributions of these deep-sea amphi-Atlantic species to the west. Most of these specimens were originally fixed in formalin, which substantially degraded the DNA. We nonetheless managed to sequence two cytochrome c oxidase subunit I (COI) mini-barcodes: the universal mini-barcode at the 5' end of the Folmer barcode (130 bp) and a newly proposed mini-barcode at the 3' end of the Folmer barcode (296 bp). These mini-barcodes unambiguously confirmed our identifications. As an additional test, we also successfully sequenced these two mini-barcodes from the holotype of G. barretti, collected in 1855. We conclude by advocating the use of mini-barcodes on formalin-fixed or old specimens with degraded DNA. Dataset North Atlantic PANGAEA - Data Publisher for Earth & Environmental Science Folmer ENVELOPE(12.601,12.601,64.648,64.648) Norway ENVELOPE(-67.480500,10.790000,64.710000,33.753300) |
institution |
Open Polar |
collection |
PANGAEA - Data Publisher for Earth & Environmental Science |
op_collection_id |
ftpangaea |
language |
English |
topic |
Alv_3886 Alv_3904 ALV-3885 ALV-3887 ALV-4162 ALVIN Area/locality AT07-35 AT08-01 AT12-01 Atlantis (1997) Campaign Collection DATE/TIME DE00-11 DE00-11_17 DE02-06 DE02-06_46 Deep-sea Sponge Grounds Ecosystems of the North Atlantic Delaware II Description Event label Identification Investigator LATITUDE LONGITUDE New England Mountains North Atlantic Ocean Norway OT Otter trawl RB04-04_MAN708 RB200404B Remote operated vehicle Ronald H. Brown ROV Sample comment Sample elevation Species SponGES Submersible Alvin Treatment Uniform resource locator/link to metadata file Vikna_Is |
spellingShingle |
Alv_3886 Alv_3904 ALV-3885 ALV-3887 ALV-4162 ALVIN Area/locality AT07-35 AT08-01 AT12-01 Atlantis (1997) Campaign Collection DATE/TIME DE00-11 DE00-11_17 DE02-06 DE02-06_46 Deep-sea Sponge Grounds Ecosystems of the North Atlantic Delaware II Description Event label Identification Investigator LATITUDE LONGITUDE New England Mountains North Atlantic Ocean Norway OT Otter trawl RB04-04_MAN708 RB200404B Remote operated vehicle Ronald H. Brown ROV Sample comment Sample elevation Species SponGES Submersible Alvin Treatment Uniform resource locator/link to metadata file Vikna_Is Cárdenas, Paco Moore, Jon A Collecting information and identification of New England Seamount Geodia species |
topic_facet |
Alv_3886 Alv_3904 ALV-3885 ALV-3887 ALV-4162 ALVIN Area/locality AT07-35 AT08-01 AT12-01 Atlantis (1997) Campaign Collection DATE/TIME DE00-11 DE00-11_17 DE02-06 DE02-06_46 Deep-sea Sponge Grounds Ecosystems of the North Atlantic Delaware II Description Event label Identification Investigator LATITUDE LONGITUDE New England Mountains North Atlantic Ocean Norway OT Otter trawl RB04-04_MAN708 RB200404B Remote operated vehicle Ronald H. Brown ROV Sample comment Sample elevation Species SponGES Submersible Alvin Treatment Uniform resource locator/link to metadata file Vikna_Is |
description |
We report the first records of the sponge genus Geodia (Demospongiae, Tetractinellida, Geodiidae) from the New England Seamounts and Muir Seamount, at lower bathyal depths. Nine specimens collected between 2000 and 2005 belong to two boreal species (Geodia macandrewii and Geodia barretti) and a temperate species (Geodia megastrella). These records extend the distributions of these deep-sea amphi-Atlantic species to the west. Most of these specimens were originally fixed in formalin, which substantially degraded the DNA. We nonetheless managed to sequence two cytochrome c oxidase subunit I (COI) mini-barcodes: the universal mini-barcode at the 5' end of the Folmer barcode (130 bp) and a newly proposed mini-barcode at the 3' end of the Folmer barcode (296 bp). These mini-barcodes unambiguously confirmed our identifications. As an additional test, we also successfully sequenced these two mini-barcodes from the holotype of G. barretti, collected in 1855. We conclude by advocating the use of mini-barcodes on formalin-fixed or old specimens with degraded DNA. |
format |
Dataset |
author |
Cárdenas, Paco Moore, Jon A |
author_facet |
Cárdenas, Paco Moore, Jon A |
author_sort |
Cárdenas, Paco |
title |
Collecting information and identification of New England Seamount Geodia species |
title_short |
Collecting information and identification of New England Seamount Geodia species |
title_full |
Collecting information and identification of New England Seamount Geodia species |
title_fullStr |
Collecting information and identification of New England Seamount Geodia species |
title_full_unstemmed |
Collecting information and identification of New England Seamount Geodia species |
title_sort |
collecting information and identification of new england seamount geodia species |
publisher |
PANGAEA |
publishDate |
2016 |
url |
https://doi.pangaea.de/10.1594/PANGAEA.867276 https://doi.org/10.1594/PANGAEA.867276 |
op_coverage |
MEDIAN LATITUDE: 39.622396 * MEDIAN LONGITUDE: -56.543543 * SOUTH-BOUND LATITUDE: 33.753300 * WEST-BOUND LONGITUDE: -67.480500 * NORTH-BOUND LATITUDE: 64.710000 * EAST-BOUND LONGITUDE: 10.790000 * DATE/TIME START: 1855-08-06T00:00:00 * DATE/TIME END: 2005-10-28T00:00:00 * MINIMUM ELEVATION: -2838.0 m * MAXIMUM ELEVATION: 2008.0 m |
long_lat |
ENVELOPE(12.601,12.601,64.648,64.648) ENVELOPE(-67.480500,10.790000,64.710000,33.753300) |
geographic |
Folmer Norway |
geographic_facet |
Folmer Norway |
genre |
North Atlantic |
genre_facet |
North Atlantic |
op_source |
Supplement to: Cárdenas, Paco; Moore, Jon A (2017): First records of Geodia demosponges from the New England seamounts, an opportunity to test the use of DNA mini-barcodes on museum specimens. Marine Biodiversity, 12 pp, https://doi.org/10.1007/s12526-017-0775-3 |
op_relation |
https://doi.pangaea.de/10.1594/PANGAEA.867276 https://doi.org/10.1594/PANGAEA.867276 |
op_rights |
CC-BY-3.0: Creative Commons Attribution 3.0 Unported Access constraints: unrestricted info:eu-repo/semantics/openAccess |
op_rightsnorm |
CC-BY |
op_doi |
https://doi.org/10.1594/PANGAEA.867276 https://doi.org/10.1007/s12526-017-0775-3 |
_version_ |
1766129337330827264 |