Relative abundance of anaerobic methanotrophic archaea in bacterial mat Cascadia margin off Oregon
The microbially mediated anaerobic oxidation of methane (AOM) is the major biological sink of the greenhouse gas methane in marine sediments (doi:10.1007/978-94-009-0213-8_44) and serves as an important control for emission of methane into the hydrosphere. The AOM metabolic process is assumed to be...
Main Authors: | , , , , |
---|---|
Format: | Dataset |
Language: | English |
Published: |
PANGAEA
2016
|
Subjects: | |
Online Access: | https://doi.pangaea.de/10.1594/PANGAEA.860405 https://doi.org/10.1594/PANGAEA.860405 |
id |
ftpangaea:oai:pangaea.de:doi:10.1594/PANGAEA.860405 |
---|---|
record_format |
openpolar |
institution |
Open Polar |
collection |
PANGAEA - Data Publisher for Earth & Environmental Science |
op_collection_id |
ftpangaea |
language |
English |
topic |
Anaerobic methanotrophic archaea-1 targeted with ANME-1-350 oligonucleotide FISH-probe Cascadia Margin Date/Time of event DEPTH water Event label Fluorescence in situ hybridization (FISH) Habitat Latitude of event Longitude of event Multicorer with television SO143_105-1 SO143_139 SO143_185-1 SO143/2 SO148/1 SO148/1_19-2 SO148/1_38 SO148/1_51 Sonne Standard deviation TECFLUX I TECFLUX II TVMUC TV-MUC-10 TV-MUC-12 TV-MUC-6 |
spellingShingle |
Anaerobic methanotrophic archaea-1 targeted with ANME-1-350 oligonucleotide FISH-probe Cascadia Margin Date/Time of event DEPTH water Event label Fluorescence in situ hybridization (FISH) Habitat Latitude of event Longitude of event Multicorer with television SO143_105-1 SO143_139 SO143_185-1 SO143/2 SO148/1 SO148/1_19-2 SO148/1_38 SO148/1_51 Sonne Standard deviation TECFLUX I TECFLUX II TVMUC TV-MUC-10 TV-MUC-12 TV-MUC-6 Knittel, Katrin Lösekann, Tina Boetius, Antje Kort, Renate Amann, Rudolf Relative abundance of anaerobic methanotrophic archaea in bacterial mat Cascadia margin off Oregon |
topic_facet |
Anaerobic methanotrophic archaea-1 targeted with ANME-1-350 oligonucleotide FISH-probe Cascadia Margin Date/Time of event DEPTH water Event label Fluorescence in situ hybridization (FISH) Habitat Latitude of event Longitude of event Multicorer with television SO143_105-1 SO143_139 SO143_185-1 SO143/2 SO148/1 SO148/1_19-2 SO148/1_38 SO148/1_51 Sonne Standard deviation TECFLUX I TECFLUX II TVMUC TV-MUC-10 TV-MUC-12 TV-MUC-6 |
description |
The microbially mediated anaerobic oxidation of methane (AOM) is the major biological sink of the greenhouse gas methane in marine sediments (doi:10.1007/978-94-009-0213-8_44) and serves as an important control for emission of methane into the hydrosphere. The AOM metabolic process is assumed to be a reversal of methanogenesis coupled to the reduction of sulfate to sulfide involving methanotrophic archaea (ANME) and sulfate-reducing bacteria (SRB) as syntrophic partners which were describes amongst others in Boetius et al. (2000; doi:10.1038/35036572). In this study, 16S rRNA-based methods were used to investigate the distribution and biomass of archaea in samples from sediments above outcropping methane hydrate at Hydrate Ridge (Cascadia margin off Oregon) and (ii) massive microbial mats enclosing carbonate reefs (Crimea area, Black Sea). Sediment samples from Hydrate Ridge were obtained during R/V SONNE cruises SO143-2 in August 1999 and SO148-1 in August 2000 at the crest of southern Hydrate Ridge at the Cascadia convergent margin off the coast of Oregon. The second study area is located in the Black Sea and represents a field in which there is active seepage of free gas on the slope of the northwestern Crimea area. Here, a field of conspicuous microbial reefs forming chimney-like structures was discovered at a water depth of 230 m in anoxic waters. The microbial mats were sampled by using the manned submersible JAGO during the R/V Prof. LOGACHEV cruise in July 2001. At Hydrate Ridge the surface sediments were dominated by aggregates consisting of ANME-2 and members of the Desulfosarcina-Desulfococcus branch (DSS) (ANME-2/DSS aggregates), which accounted for >90% of the total cell biomass. The numbers of ANME-1 cells increased strongly with depth; these cells accounted 1% of all single cells at the surface and more than 30% of all single cells (5% of the total cells) in 7- to 10-cm sediment horizons that were directly above layers of gas hydrate. In the Black Sea microbial mats ANME-1 accounted for about ... |
format |
Dataset |
author |
Knittel, Katrin Lösekann, Tina Boetius, Antje Kort, Renate Amann, Rudolf |
author_facet |
Knittel, Katrin Lösekann, Tina Boetius, Antje Kort, Renate Amann, Rudolf |
author_sort |
Knittel, Katrin |
title |
Relative abundance of anaerobic methanotrophic archaea in bacterial mat Cascadia margin off Oregon |
title_short |
Relative abundance of anaerobic methanotrophic archaea in bacterial mat Cascadia margin off Oregon |
title_full |
Relative abundance of anaerobic methanotrophic archaea in bacterial mat Cascadia margin off Oregon |
title_fullStr |
Relative abundance of anaerobic methanotrophic archaea in bacterial mat Cascadia margin off Oregon |
title_full_unstemmed |
Relative abundance of anaerobic methanotrophic archaea in bacterial mat Cascadia margin off Oregon |
title_sort |
relative abundance of anaerobic methanotrophic archaea in bacterial mat cascadia margin off oregon |
publisher |
PANGAEA |
publishDate |
2016 |
url |
https://doi.pangaea.de/10.1594/PANGAEA.860405 https://doi.org/10.1594/PANGAEA.860405 |
op_coverage |
MEDIAN LATITUDE: 44.569588 * MEDIAN LONGITUDE: -125.146493 * SOUTH-BOUND LATITUDE: 44.568330 * WEST-BOUND LONGITUDE: -125.147750 * NORTH-BOUND LATITUDE: 44.570300 * EAST-BOUND LONGITUDE: -125.139670 * DATE/TIME START: 1999-08-06T02:23:00 * DATE/TIME END: 2000-08-01T05:00:00 * MINIMUM DEPTH, water: 0.005 m * MAXIMUM DEPTH, water: 0.145 m |
long_lat |
ENVELOPE(-125.147750,-125.139670,44.570300,44.568330) |
genre |
Methane hydrate |
genre_facet |
Methane hydrate |
op_source |
Supplement to: Knittel, Katrin; Lösekann, Tina; Boetius, Antje; Kort, Renate; Amann, Rudolf (2005): Diversity and Distribution of Methanotrophic Archaea at Cold Seeps. Applied and Environmental Microbiology, 71(1), 467-479, https://doi.org/10.1128/AEM.71.1.467-479.2005 |
op_relation |
Oligonucleotide probes and formamide concentration used in Knittel et al., 2005 (URI: https://store.pangaea.de/Publications/Knittel_etal_2005/Oligonucleotide-probes_Knittel-etal_2005.pdf) https://doi.pangaea.de/10.1594/PANGAEA.860405 https://doi.org/10.1594/PANGAEA.860405 |
op_rights |
CC-BY-3.0: Creative Commons Attribution 3.0 Unported Access constraints: unrestricted info:eu-repo/semantics/openAccess |
op_doi |
https://doi.org/10.1594/PANGAEA.86040510.1128/AEM.71.1.467-479.2005 |
_version_ |
1810456791990927360 |
spelling |
ftpangaea:oai:pangaea.de:doi:10.1594/PANGAEA.860405 2024-09-15T18:18:43+00:00 Relative abundance of anaerobic methanotrophic archaea in bacterial mat Cascadia margin off Oregon Knittel, Katrin Lösekann, Tina Boetius, Antje Kort, Renate Amann, Rudolf MEDIAN LATITUDE: 44.569588 * MEDIAN LONGITUDE: -125.146493 * SOUTH-BOUND LATITUDE: 44.568330 * WEST-BOUND LONGITUDE: -125.147750 * NORTH-BOUND LATITUDE: 44.570300 * EAST-BOUND LONGITUDE: -125.139670 * DATE/TIME START: 1999-08-06T02:23:00 * DATE/TIME END: 2000-08-01T05:00:00 * MINIMUM DEPTH, water: 0.005 m * MAXIMUM DEPTH, water: 0.145 m 2016 text/tab-separated-values, 156 data points https://doi.pangaea.de/10.1594/PANGAEA.860405 https://doi.org/10.1594/PANGAEA.860405 en eng PANGAEA Oligonucleotide probes and formamide concentration used in Knittel et al., 2005 (URI: https://store.pangaea.de/Publications/Knittel_etal_2005/Oligonucleotide-probes_Knittel-etal_2005.pdf) https://doi.pangaea.de/10.1594/PANGAEA.860405 https://doi.org/10.1594/PANGAEA.860405 CC-BY-3.0: Creative Commons Attribution 3.0 Unported Access constraints: unrestricted info:eu-repo/semantics/openAccess Supplement to: Knittel, Katrin; Lösekann, Tina; Boetius, Antje; Kort, Renate; Amann, Rudolf (2005): Diversity and Distribution of Methanotrophic Archaea at Cold Seeps. Applied and Environmental Microbiology, 71(1), 467-479, https://doi.org/10.1128/AEM.71.1.467-479.2005 Anaerobic methanotrophic archaea-1 targeted with ANME-1-350 oligonucleotide FISH-probe Cascadia Margin Date/Time of event DEPTH water Event label Fluorescence in situ hybridization (FISH) Habitat Latitude of event Longitude of event Multicorer with television SO143_105-1 SO143_139 SO143_185-1 SO143/2 SO148/1 SO148/1_19-2 SO148/1_38 SO148/1_51 Sonne Standard deviation TECFLUX I TECFLUX II TVMUC TV-MUC-10 TV-MUC-12 TV-MUC-6 dataset 2016 ftpangaea https://doi.org/10.1594/PANGAEA.86040510.1128/AEM.71.1.467-479.2005 2024-07-24T02:31:33Z The microbially mediated anaerobic oxidation of methane (AOM) is the major biological sink of the greenhouse gas methane in marine sediments (doi:10.1007/978-94-009-0213-8_44) and serves as an important control for emission of methane into the hydrosphere. The AOM metabolic process is assumed to be a reversal of methanogenesis coupled to the reduction of sulfate to sulfide involving methanotrophic archaea (ANME) and sulfate-reducing bacteria (SRB) as syntrophic partners which were describes amongst others in Boetius et al. (2000; doi:10.1038/35036572). In this study, 16S rRNA-based methods were used to investigate the distribution and biomass of archaea in samples from sediments above outcropping methane hydrate at Hydrate Ridge (Cascadia margin off Oregon) and (ii) massive microbial mats enclosing carbonate reefs (Crimea area, Black Sea). Sediment samples from Hydrate Ridge were obtained during R/V SONNE cruises SO143-2 in August 1999 and SO148-1 in August 2000 at the crest of southern Hydrate Ridge at the Cascadia convergent margin off the coast of Oregon. The second study area is located in the Black Sea and represents a field in which there is active seepage of free gas on the slope of the northwestern Crimea area. Here, a field of conspicuous microbial reefs forming chimney-like structures was discovered at a water depth of 230 m in anoxic waters. The microbial mats were sampled by using the manned submersible JAGO during the R/V Prof. LOGACHEV cruise in July 2001. At Hydrate Ridge the surface sediments were dominated by aggregates consisting of ANME-2 and members of the Desulfosarcina-Desulfococcus branch (DSS) (ANME-2/DSS aggregates), which accounted for >90% of the total cell biomass. The numbers of ANME-1 cells increased strongly with depth; these cells accounted 1% of all single cells at the surface and more than 30% of all single cells (5% of the total cells) in 7- to 10-cm sediment horizons that were directly above layers of gas hydrate. In the Black Sea microbial mats ANME-1 accounted for about ... Dataset Methane hydrate PANGAEA - Data Publisher for Earth & Environmental Science ENVELOPE(-125.147750,-125.139670,44.570300,44.568330) |