Proteomic and metabolomic responses of Pacific oyster Crassostrea gigas to elevated pCO2 exposure

The gradually increased atmospheric CO2 partial pressure (pCO2) has thrown the carbonate chemistry off balance and resulted in decreased seawater pH in marine ecosystem, termed ocean acidification (OA). Anthropogenic OA is postulated to affect the physiology of many marine calcifying organisms. Howe...

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Bibliographic Details
Main Authors: Wei, Lei, Wang, Qing, Wu, Huifeng, Ji, Chenglong, Zhao, Jianmin
Format: Dataset
Language:English
Published: PANGAEA 2015
Subjects:
pH
Online Access:https://doi.pangaea.de/10.1594/PANGAEA.836666
https://doi.org/10.1594/PANGAEA.836666
id ftpangaea:oai:pangaea.de:doi:10.1594/PANGAEA.836666
record_format openpolar
institution Open Polar
collection PANGAEA - Data Publisher for Earth & Environmental Science
op_collection_id ftpangaea
language English
topic Alkalinity
total
Animalia
Aragonite saturation state
Benthic animals
Benthos
Bicarbonate ion
Calcite saturation state
Calculated using CO2SYS
Calculated using seacarb after Nisumaa et al. (2010)
Carbon
inorganic
dissolved
Carbonate ion
Carbonate system computation flag
Carbon dioxide
Coast and continental shelf
Containers and aquaria (20-1000 L or < 1 m**2)
Coulometric titration
Crassostrea gigas
Fugacity of carbon dioxide (water) at sea surface temperature (wet air)
Gene expression (incl. proteomics)
Laboratory experiment
Mollusca
mRNA gene expression
relative
standard deviation
North Pacific
OA-ICC
Ocean Acidification International Coordination Centre
Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)
pH
Potentiometric
Protein name
Salinity
Single species
Species
Temperate
Temperature
water
Tissues
Treatment
spellingShingle Alkalinity
total
Animalia
Aragonite saturation state
Benthic animals
Benthos
Bicarbonate ion
Calcite saturation state
Calculated using CO2SYS
Calculated using seacarb after Nisumaa et al. (2010)
Carbon
inorganic
dissolved
Carbonate ion
Carbonate system computation flag
Carbon dioxide
Coast and continental shelf
Containers and aquaria (20-1000 L or < 1 m**2)
Coulometric titration
Crassostrea gigas
Fugacity of carbon dioxide (water) at sea surface temperature (wet air)
Gene expression (incl. proteomics)
Laboratory experiment
Mollusca
mRNA gene expression
relative
standard deviation
North Pacific
OA-ICC
Ocean Acidification International Coordination Centre
Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)
pH
Potentiometric
Protein name
Salinity
Single species
Species
Temperate
Temperature
water
Tissues
Treatment
Wei, Lei
Wang, Qing
Wu, Huifeng
Ji, Chenglong
Zhao, Jianmin
Proteomic and metabolomic responses of Pacific oyster Crassostrea gigas to elevated pCO2 exposure
topic_facet Alkalinity
total
Animalia
Aragonite saturation state
Benthic animals
Benthos
Bicarbonate ion
Calcite saturation state
Calculated using CO2SYS
Calculated using seacarb after Nisumaa et al. (2010)
Carbon
inorganic
dissolved
Carbonate ion
Carbonate system computation flag
Carbon dioxide
Coast and continental shelf
Containers and aquaria (20-1000 L or < 1 m**2)
Coulometric titration
Crassostrea gigas
Fugacity of carbon dioxide (water) at sea surface temperature (wet air)
Gene expression (incl. proteomics)
Laboratory experiment
Mollusca
mRNA gene expression
relative
standard deviation
North Pacific
OA-ICC
Ocean Acidification International Coordination Centre
Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)
pH
Potentiometric
Protein name
Salinity
Single species
Species
Temperate
Temperature
water
Tissues
Treatment
description The gradually increased atmospheric CO2 partial pressure (pCO2) has thrown the carbonate chemistry off balance and resulted in decreased seawater pH in marine ecosystem, termed ocean acidification (OA). Anthropogenic OA is postulated to affect the physiology of many marine calcifying organisms. However, the susceptibility and metabolic pathways of change in most calcifying animals are still far from being well understood. In this work, the effects of exposure to elevated pCO2 were characterized in gills and hepatopancreas of Crassostrea gigas using integrated proteomic and metabolomic approaches. Metabolic responses indicated that high CO2 exposure mainly caused disturbances in energy metabolism and osmotic regulation marked by differentially altered ATP, glucose, glycogen, amino acids and organic osmolytes in oysters, and the depletions of ATP in gills and the accumulations of ATP, glucose and glycogen in hepatopancreas accounted for the difference in energy distribution between these two tissues. Proteomic responses suggested that OA could not only affect energy and primary metabolisms, stress responses and calcium homeostasis in both tissues, but also influence the nucleotide metabolism in gills and cytoskeleton structure in hepatopancreas. This study demonstrated that the combination of proteomics and metabolomics could provide an insightful view into the effects of OA on oyster C. gigas. BIOLOGICAL SIGNIFICANCE: The gradually increased atmospheric CO2 partial pressure (pCO2) has thrown the carbonate chemistry off balance and resulted in decreased seawater pH in marine ecosystem, termed ocean acidification (OA). Anthropogenic OA is postulated to affect the physiology of many marine calcifying organisms. However, the susceptibility and metabolic pathways of change in most calcifying animals are still far from being understood. To our knowledge, few studies have focused on the responses induced by pCO2 at both protein and metabolite levels. The pacific oyster C. gigas, widely distributed throughout most of the ...
format Dataset
author Wei, Lei
Wang, Qing
Wu, Huifeng
Ji, Chenglong
Zhao, Jianmin
author_facet Wei, Lei
Wang, Qing
Wu, Huifeng
Ji, Chenglong
Zhao, Jianmin
author_sort Wei, Lei
title Proteomic and metabolomic responses of Pacific oyster Crassostrea gigas to elevated pCO2 exposure
title_short Proteomic and metabolomic responses of Pacific oyster Crassostrea gigas to elevated pCO2 exposure
title_full Proteomic and metabolomic responses of Pacific oyster Crassostrea gigas to elevated pCO2 exposure
title_fullStr Proteomic and metabolomic responses of Pacific oyster Crassostrea gigas to elevated pCO2 exposure
title_full_unstemmed Proteomic and metabolomic responses of Pacific oyster Crassostrea gigas to elevated pCO2 exposure
title_sort proteomic and metabolomic responses of pacific oyster crassostrea gigas to elevated pco2 exposure
publisher PANGAEA
publishDate 2015
url https://doi.pangaea.de/10.1594/PANGAEA.836666
https://doi.org/10.1594/PANGAEA.836666
genre Crassostrea gigas
Ocean acidification
Pacific oyster
genre_facet Crassostrea gigas
Ocean acidification
Pacific oyster
op_source Supplement to: Wei, Lei; Wang, Qing; Wu, Huifeng; Ji, Chenglong; Zhao, Jianmin (2014): Proteomic and metabolomic responses of Pacific oyster Crassostrea gigas to elevated pCO2 exposure. Journal of Proteomics, 112, 83-94, https://doi.org/10.1016/j.jprot.2014.08.010
op_relation Lavigne, Héloïse; Epitalon, Jean-Marie; Gattuso, Jean-Pierre (2014): seacarb: seawater carbonate chemistry with R. R package version 3.0 [webpage]. https://cran.r-project.org/package=seacarb
https://doi.pangaea.de/10.1594/PANGAEA.836666
https://doi.org/10.1594/PANGAEA.836666
op_rights CC-BY-3.0: Creative Commons Attribution 3.0 Unported
Access constraints: unrestricted
info:eu-repo/semantics/openAccess
op_doi https://doi.org/10.1594/PANGAEA.83666610.1016/j.jprot.2014.08.010
_version_ 1810440681199501312
spelling ftpangaea:oai:pangaea.de:doi:10.1594/PANGAEA.836666 2024-09-15T18:03:10+00:00 Proteomic and metabolomic responses of Pacific oyster Crassostrea gigas to elevated pCO2 exposure Wei, Lei Wang, Qing Wu, Huifeng Ji, Chenglong Zhao, Jianmin 2015 text/tab-separated-values, 352 data points https://doi.pangaea.de/10.1594/PANGAEA.836666 https://doi.org/10.1594/PANGAEA.836666 en eng PANGAEA Lavigne, Héloïse; Epitalon, Jean-Marie; Gattuso, Jean-Pierre (2014): seacarb: seawater carbonate chemistry with R. R package version 3.0 [webpage]. https://cran.r-project.org/package=seacarb https://doi.pangaea.de/10.1594/PANGAEA.836666 https://doi.org/10.1594/PANGAEA.836666 CC-BY-3.0: Creative Commons Attribution 3.0 Unported Access constraints: unrestricted info:eu-repo/semantics/openAccess Supplement to: Wei, Lei; Wang, Qing; Wu, Huifeng; Ji, Chenglong; Zhao, Jianmin (2014): Proteomic and metabolomic responses of Pacific oyster Crassostrea gigas to elevated pCO2 exposure. Journal of Proteomics, 112, 83-94, https://doi.org/10.1016/j.jprot.2014.08.010 Alkalinity total Animalia Aragonite saturation state Benthic animals Benthos Bicarbonate ion Calcite saturation state Calculated using CO2SYS Calculated using seacarb after Nisumaa et al. (2010) Carbon inorganic dissolved Carbonate ion Carbonate system computation flag Carbon dioxide Coast and continental shelf Containers and aquaria (20-1000 L or < 1 m**2) Coulometric titration Crassostrea gigas Fugacity of carbon dioxide (water) at sea surface temperature (wet air) Gene expression (incl. proteomics) Laboratory experiment Mollusca mRNA gene expression relative standard deviation North Pacific OA-ICC Ocean Acidification International Coordination Centre Partial pressure of carbon dioxide (water) at sea surface temperature (wet air) pH Potentiometric Protein name Salinity Single species Species Temperate Temperature water Tissues Treatment dataset 2015 ftpangaea https://doi.org/10.1594/PANGAEA.83666610.1016/j.jprot.2014.08.010 2024-07-24T02:31:32Z The gradually increased atmospheric CO2 partial pressure (pCO2) has thrown the carbonate chemistry off balance and resulted in decreased seawater pH in marine ecosystem, termed ocean acidification (OA). Anthropogenic OA is postulated to affect the physiology of many marine calcifying organisms. However, the susceptibility and metabolic pathways of change in most calcifying animals are still far from being well understood. In this work, the effects of exposure to elevated pCO2 were characterized in gills and hepatopancreas of Crassostrea gigas using integrated proteomic and metabolomic approaches. Metabolic responses indicated that high CO2 exposure mainly caused disturbances in energy metabolism and osmotic regulation marked by differentially altered ATP, glucose, glycogen, amino acids and organic osmolytes in oysters, and the depletions of ATP in gills and the accumulations of ATP, glucose and glycogen in hepatopancreas accounted for the difference in energy distribution between these two tissues. Proteomic responses suggested that OA could not only affect energy and primary metabolisms, stress responses and calcium homeostasis in both tissues, but also influence the nucleotide metabolism in gills and cytoskeleton structure in hepatopancreas. This study demonstrated that the combination of proteomics and metabolomics could provide an insightful view into the effects of OA on oyster C. gigas. BIOLOGICAL SIGNIFICANCE: The gradually increased atmospheric CO2 partial pressure (pCO2) has thrown the carbonate chemistry off balance and resulted in decreased seawater pH in marine ecosystem, termed ocean acidification (OA). Anthropogenic OA is postulated to affect the physiology of many marine calcifying organisms. However, the susceptibility and metabolic pathways of change in most calcifying animals are still far from being understood. To our knowledge, few studies have focused on the responses induced by pCO2 at both protein and metabolite levels. The pacific oyster C. gigas, widely distributed throughout most of the ... Dataset Crassostrea gigas Ocean acidification Pacific oyster PANGAEA - Data Publisher for Earth & Environmental Science