Proteomic and metabolomic responses of Pacific oyster Crassostrea gigas to elevated pCO2 exposure
The gradually increased atmospheric CO2 partial pressure (pCO2) has thrown the carbonate chemistry off balance and resulted in decreased seawater pH in marine ecosystem, termed ocean acidification (OA). Anthropogenic OA is postulated to affect the physiology of many marine calcifying organisms. Howe...
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PANGAEA
2015
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Online Access: | https://doi.pangaea.de/10.1594/PANGAEA.836666 https://doi.org/10.1594/PANGAEA.836666 |
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ftpangaea:oai:pangaea.de:doi:10.1594/PANGAEA.836666 |
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openpolar |
institution |
Open Polar |
collection |
PANGAEA - Data Publisher for Earth & Environmental Science |
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ftpangaea |
language |
English |
topic |
Alkalinity total Animalia Aragonite saturation state Benthic animals Benthos Bicarbonate ion Calcite saturation state Calculated using CO2SYS Calculated using seacarb after Nisumaa et al. (2010) Carbon inorganic dissolved Carbonate ion Carbonate system computation flag Carbon dioxide Coast and continental shelf Containers and aquaria (20-1000 L or < 1 m**2) Coulometric titration Crassostrea gigas Fugacity of carbon dioxide (water) at sea surface temperature (wet air) Gene expression (incl. proteomics) Laboratory experiment Mollusca mRNA gene expression relative standard deviation North Pacific OA-ICC Ocean Acidification International Coordination Centre Partial pressure of carbon dioxide (water) at sea surface temperature (wet air) pH Potentiometric Protein name Salinity Single species Species Temperate Temperature water Tissues Treatment |
spellingShingle |
Alkalinity total Animalia Aragonite saturation state Benthic animals Benthos Bicarbonate ion Calcite saturation state Calculated using CO2SYS Calculated using seacarb after Nisumaa et al. (2010) Carbon inorganic dissolved Carbonate ion Carbonate system computation flag Carbon dioxide Coast and continental shelf Containers and aquaria (20-1000 L or < 1 m**2) Coulometric titration Crassostrea gigas Fugacity of carbon dioxide (water) at sea surface temperature (wet air) Gene expression (incl. proteomics) Laboratory experiment Mollusca mRNA gene expression relative standard deviation North Pacific OA-ICC Ocean Acidification International Coordination Centre Partial pressure of carbon dioxide (water) at sea surface temperature (wet air) pH Potentiometric Protein name Salinity Single species Species Temperate Temperature water Tissues Treatment Wei, Lei Wang, Qing Wu, Huifeng Ji, Chenglong Zhao, Jianmin Proteomic and metabolomic responses of Pacific oyster Crassostrea gigas to elevated pCO2 exposure |
topic_facet |
Alkalinity total Animalia Aragonite saturation state Benthic animals Benthos Bicarbonate ion Calcite saturation state Calculated using CO2SYS Calculated using seacarb after Nisumaa et al. (2010) Carbon inorganic dissolved Carbonate ion Carbonate system computation flag Carbon dioxide Coast and continental shelf Containers and aquaria (20-1000 L or < 1 m**2) Coulometric titration Crassostrea gigas Fugacity of carbon dioxide (water) at sea surface temperature (wet air) Gene expression (incl. proteomics) Laboratory experiment Mollusca mRNA gene expression relative standard deviation North Pacific OA-ICC Ocean Acidification International Coordination Centre Partial pressure of carbon dioxide (water) at sea surface temperature (wet air) pH Potentiometric Protein name Salinity Single species Species Temperate Temperature water Tissues Treatment |
description |
The gradually increased atmospheric CO2 partial pressure (pCO2) has thrown the carbonate chemistry off balance and resulted in decreased seawater pH in marine ecosystem, termed ocean acidification (OA). Anthropogenic OA is postulated to affect the physiology of many marine calcifying organisms. However, the susceptibility and metabolic pathways of change in most calcifying animals are still far from being well understood. In this work, the effects of exposure to elevated pCO2 were characterized in gills and hepatopancreas of Crassostrea gigas using integrated proteomic and metabolomic approaches. Metabolic responses indicated that high CO2 exposure mainly caused disturbances in energy metabolism and osmotic regulation marked by differentially altered ATP, glucose, glycogen, amino acids and organic osmolytes in oysters, and the depletions of ATP in gills and the accumulations of ATP, glucose and glycogen in hepatopancreas accounted for the difference in energy distribution between these two tissues. Proteomic responses suggested that OA could not only affect energy and primary metabolisms, stress responses and calcium homeostasis in both tissues, but also influence the nucleotide metabolism in gills and cytoskeleton structure in hepatopancreas. This study demonstrated that the combination of proteomics and metabolomics could provide an insightful view into the effects of OA on oyster C. gigas. BIOLOGICAL SIGNIFICANCE: The gradually increased atmospheric CO2 partial pressure (pCO2) has thrown the carbonate chemistry off balance and resulted in decreased seawater pH in marine ecosystem, termed ocean acidification (OA). Anthropogenic OA is postulated to affect the physiology of many marine calcifying organisms. However, the susceptibility and metabolic pathways of change in most calcifying animals are still far from being understood. To our knowledge, few studies have focused on the responses induced by pCO2 at both protein and metabolite levels. The pacific oyster C. gigas, widely distributed throughout most of the ... |
format |
Dataset |
author |
Wei, Lei Wang, Qing Wu, Huifeng Ji, Chenglong Zhao, Jianmin |
author_facet |
Wei, Lei Wang, Qing Wu, Huifeng Ji, Chenglong Zhao, Jianmin |
author_sort |
Wei, Lei |
title |
Proteomic and metabolomic responses of Pacific oyster Crassostrea gigas to elevated pCO2 exposure |
title_short |
Proteomic and metabolomic responses of Pacific oyster Crassostrea gigas to elevated pCO2 exposure |
title_full |
Proteomic and metabolomic responses of Pacific oyster Crassostrea gigas to elevated pCO2 exposure |
title_fullStr |
Proteomic and metabolomic responses of Pacific oyster Crassostrea gigas to elevated pCO2 exposure |
title_full_unstemmed |
Proteomic and metabolomic responses of Pacific oyster Crassostrea gigas to elevated pCO2 exposure |
title_sort |
proteomic and metabolomic responses of pacific oyster crassostrea gigas to elevated pco2 exposure |
publisher |
PANGAEA |
publishDate |
2015 |
url |
https://doi.pangaea.de/10.1594/PANGAEA.836666 https://doi.org/10.1594/PANGAEA.836666 |
genre |
Crassostrea gigas Ocean acidification Pacific oyster |
genre_facet |
Crassostrea gigas Ocean acidification Pacific oyster |
op_source |
Supplement to: Wei, Lei; Wang, Qing; Wu, Huifeng; Ji, Chenglong; Zhao, Jianmin (2014): Proteomic and metabolomic responses of Pacific oyster Crassostrea gigas to elevated pCO2 exposure. Journal of Proteomics, 112, 83-94, https://doi.org/10.1016/j.jprot.2014.08.010 |
op_relation |
Lavigne, Héloïse; Epitalon, Jean-Marie; Gattuso, Jean-Pierre (2014): seacarb: seawater carbonate chemistry with R. R package version 3.0 [webpage]. https://cran.r-project.org/package=seacarb https://doi.pangaea.de/10.1594/PANGAEA.836666 https://doi.org/10.1594/PANGAEA.836666 |
op_rights |
CC-BY-3.0: Creative Commons Attribution 3.0 Unported Access constraints: unrestricted info:eu-repo/semantics/openAccess |
op_doi |
https://doi.org/10.1594/PANGAEA.83666610.1016/j.jprot.2014.08.010 |
_version_ |
1810440681199501312 |
spelling |
ftpangaea:oai:pangaea.de:doi:10.1594/PANGAEA.836666 2024-09-15T18:03:10+00:00 Proteomic and metabolomic responses of Pacific oyster Crassostrea gigas to elevated pCO2 exposure Wei, Lei Wang, Qing Wu, Huifeng Ji, Chenglong Zhao, Jianmin 2015 text/tab-separated-values, 352 data points https://doi.pangaea.de/10.1594/PANGAEA.836666 https://doi.org/10.1594/PANGAEA.836666 en eng PANGAEA Lavigne, Héloïse; Epitalon, Jean-Marie; Gattuso, Jean-Pierre (2014): seacarb: seawater carbonate chemistry with R. R package version 3.0 [webpage]. https://cran.r-project.org/package=seacarb https://doi.pangaea.de/10.1594/PANGAEA.836666 https://doi.org/10.1594/PANGAEA.836666 CC-BY-3.0: Creative Commons Attribution 3.0 Unported Access constraints: unrestricted info:eu-repo/semantics/openAccess Supplement to: Wei, Lei; Wang, Qing; Wu, Huifeng; Ji, Chenglong; Zhao, Jianmin (2014): Proteomic and metabolomic responses of Pacific oyster Crassostrea gigas to elevated pCO2 exposure. Journal of Proteomics, 112, 83-94, https://doi.org/10.1016/j.jprot.2014.08.010 Alkalinity total Animalia Aragonite saturation state Benthic animals Benthos Bicarbonate ion Calcite saturation state Calculated using CO2SYS Calculated using seacarb after Nisumaa et al. (2010) Carbon inorganic dissolved Carbonate ion Carbonate system computation flag Carbon dioxide Coast and continental shelf Containers and aquaria (20-1000 L or < 1 m**2) Coulometric titration Crassostrea gigas Fugacity of carbon dioxide (water) at sea surface temperature (wet air) Gene expression (incl. proteomics) Laboratory experiment Mollusca mRNA gene expression relative standard deviation North Pacific OA-ICC Ocean Acidification International Coordination Centre Partial pressure of carbon dioxide (water) at sea surface temperature (wet air) pH Potentiometric Protein name Salinity Single species Species Temperate Temperature water Tissues Treatment dataset 2015 ftpangaea https://doi.org/10.1594/PANGAEA.83666610.1016/j.jprot.2014.08.010 2024-07-24T02:31:32Z The gradually increased atmospheric CO2 partial pressure (pCO2) has thrown the carbonate chemistry off balance and resulted in decreased seawater pH in marine ecosystem, termed ocean acidification (OA). Anthropogenic OA is postulated to affect the physiology of many marine calcifying organisms. However, the susceptibility and metabolic pathways of change in most calcifying animals are still far from being well understood. In this work, the effects of exposure to elevated pCO2 were characterized in gills and hepatopancreas of Crassostrea gigas using integrated proteomic and metabolomic approaches. Metabolic responses indicated that high CO2 exposure mainly caused disturbances in energy metabolism and osmotic regulation marked by differentially altered ATP, glucose, glycogen, amino acids and organic osmolytes in oysters, and the depletions of ATP in gills and the accumulations of ATP, glucose and glycogen in hepatopancreas accounted for the difference in energy distribution between these two tissues. Proteomic responses suggested that OA could not only affect energy and primary metabolisms, stress responses and calcium homeostasis in both tissues, but also influence the nucleotide metabolism in gills and cytoskeleton structure in hepatopancreas. This study demonstrated that the combination of proteomics and metabolomics could provide an insightful view into the effects of OA on oyster C. gigas. BIOLOGICAL SIGNIFICANCE: The gradually increased atmospheric CO2 partial pressure (pCO2) has thrown the carbonate chemistry off balance and resulted in decreased seawater pH in marine ecosystem, termed ocean acidification (OA). Anthropogenic OA is postulated to affect the physiology of many marine calcifying organisms. However, the susceptibility and metabolic pathways of change in most calcifying animals are still far from being understood. To our knowledge, few studies have focused on the responses induced by pCO2 at both protein and metabolite levels. The pacific oyster C. gigas, widely distributed throughout most of the ... Dataset Crassostrea gigas Ocean acidification Pacific oyster PANGAEA - Data Publisher for Earth & Environmental Science |