Elevated CO2 alters larval proteome and its phosphorylation status in the commercial oyster, Crassostrea hongkongensis

Ocean acidification (OA) is beginning to have noticeable negative impact on calcification rate, shell structure and physiological energy budgeting of several marine organisms; these alter the growth of many economically important shellfish including oysters. Early life stages of oysters may be parti...

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Main Authors: Dineshram, R, Thiyagarajan, Vengatesen, Lane, Ackley Charles, Yu, Ziniu, Shu, Xiao, Leung, Priscilla TY
Format: Dataset
Language:English
Published: PANGAEA 2013
Subjects:
pH
Online Access:https://doi.pangaea.de/10.1594/PANGAEA.831445
https://doi.org/10.1594/PANGAEA.831445
id ftpangaea:oai:pangaea.de:doi:10.1594/PANGAEA.831445
record_format openpolar
spelling ftpangaea:oai:pangaea.de:doi:10.1594/PANGAEA.831445 2024-09-15T18:28:07+00:00 Elevated CO2 alters larval proteome and its phosphorylation status in the commercial oyster, Crassostrea hongkongensis Dineshram, R Thiyagarajan, Vengatesen Lane, Ackley Charles Yu, Ziniu Shu, Xiao Leung, Priscilla TY 2013 text/tab-separated-values, 6308 data points https://doi.pangaea.de/10.1594/PANGAEA.831445 https://doi.org/10.1594/PANGAEA.831445 en eng PANGAEA Lavigne, Héloïse; Gattuso, Jean-Pierre (2011): seacarb: seawater carbonate chemistry with R. R package version 2.4 [webpage]. https://cran.r-project.org/package=seacarb https://doi.pangaea.de/10.1594/PANGAEA.831445 https://doi.org/10.1594/PANGAEA.831445 CC-BY-3.0: Creative Commons Attribution 3.0 Unported Access constraints: unrestricted info:eu-repo/semantics/openAccess Supplement to: Dineshram, R; Thiyagarajan, Vengatesen; Lane, Ackley Charles; Yu, Ziniu; Shu, Xiao; Leung, Priscilla TY (2013): Elevated CO2 alters larval proteome and its phosphorylation status in the commercial oyster, Crassostrea hongkongensis. Marine Biology, 160(8), 2189-2205, https://doi.org/10.1007/s00227-013-2176-x Alkalinity total Animalia Aragonite saturation state Bicarbonate ion Calcite saturation state Calculated using CO2SYS Calculated using seacarb after Nisumaa et al. (2010) Carbon inorganic dissolved Carbonate ion Carbonate system computation flag Carbon dioxide Coast and continental shelf Containers and aquaria (20-1000 L or < 1 m**2) Crassostrea hongkongensis Figure Fugacity of carbon dioxide (water) at sea surface temperature (wet air) Gene expression (incl. proteomics) Growth/Morphology Growth rate standard deviation Incubation duration Laboratory experiment Mollusca North Pacific OA-ICC Ocean Acidification International Coordination Centre Partial pressure of carbon dioxide (water) at sea surface temperature (wet air) Pelagos pH Potentiometric Potentiometric titration Protein name Protein spots Replicates Salinity Shell length Single species Species Spot intensity relative dataset 2013 ftpangaea https://doi.org/10.1594/PANGAEA.83144510.1007/s00227-013-2176-x 2024-07-24T02:31:32Z Ocean acidification (OA) is beginning to have noticeable negative impact on calcification rate, shell structure and physiological energy budgeting of several marine organisms; these alter the growth of many economically important shellfish including oysters. Early life stages of oysters may be particularly vulnerable to OA-driven low pH conditions because their shell is made up of the highly soluble form of calcium carbonate (CaCO3) mineral, aragonite. Our long-term CO2 perturbation experiment showed that larval shell growth rate of the oyster species Crassostrea hongkongensis was significantly reduced at pH < 7.9 compared to the control (8.2). To gain new insights into the underlying mechanisms of low-pH-induced delays in larval growth, we have examined the effect of pH on the protein expression pattern, including protein phosphorylation status at the pediveliger larval stage. Using two-dimensional electrophoresis and mass spectrometry, we demonstrated that the larval proteome was significantly altered by the two low pH treatments (7.9 and 7.6) compared to the control pH (8.2). Generally, the number of expressed proteins and their phosphorylation level decreased with low pH. Proteins involved in larval energy metabolism and calcification appeared to be down-regulated in response to low pH, whereas cell motility and production of cytoskeletal proteins were increased. This study on larval growth coupled with proteome change is the first step toward the search for novel Protein Expression Signatures indicative of low pH, which may help in understanding the mechanisms involved in low pH tolerance. Dataset Ocean acidification PANGAEA - Data Publisher for Earth & Environmental Science
institution Open Polar
collection PANGAEA - Data Publisher for Earth & Environmental Science
op_collection_id ftpangaea
language English
topic Alkalinity
total
Animalia
Aragonite saturation state
Bicarbonate ion
Calcite saturation state
Calculated using CO2SYS
Calculated using seacarb after Nisumaa et al. (2010)
Carbon
inorganic
dissolved
Carbonate ion
Carbonate system computation flag
Carbon dioxide
Coast and continental shelf
Containers and aquaria (20-1000 L or < 1 m**2)
Crassostrea hongkongensis
Figure
Fugacity of carbon dioxide (water) at sea surface temperature (wet air)
Gene expression (incl. proteomics)
Growth/Morphology
Growth rate
standard deviation
Incubation duration
Laboratory experiment
Mollusca
North Pacific
OA-ICC
Ocean Acidification International Coordination Centre
Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)
Pelagos
pH
Potentiometric
Potentiometric titration
Protein name
Protein spots
Replicates
Salinity
Shell length
Single species
Species
Spot intensity
relative
spellingShingle Alkalinity
total
Animalia
Aragonite saturation state
Bicarbonate ion
Calcite saturation state
Calculated using CO2SYS
Calculated using seacarb after Nisumaa et al. (2010)
Carbon
inorganic
dissolved
Carbonate ion
Carbonate system computation flag
Carbon dioxide
Coast and continental shelf
Containers and aquaria (20-1000 L or < 1 m**2)
Crassostrea hongkongensis
Figure
Fugacity of carbon dioxide (water) at sea surface temperature (wet air)
Gene expression (incl. proteomics)
Growth/Morphology
Growth rate
standard deviation
Incubation duration
Laboratory experiment
Mollusca
North Pacific
OA-ICC
Ocean Acidification International Coordination Centre
Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)
Pelagos
pH
Potentiometric
Potentiometric titration
Protein name
Protein spots
Replicates
Salinity
Shell length
Single species
Species
Spot intensity
relative
Dineshram, R
Thiyagarajan, Vengatesen
Lane, Ackley Charles
Yu, Ziniu
Shu, Xiao
Leung, Priscilla TY
Elevated CO2 alters larval proteome and its phosphorylation status in the commercial oyster, Crassostrea hongkongensis
topic_facet Alkalinity
total
Animalia
Aragonite saturation state
Bicarbonate ion
Calcite saturation state
Calculated using CO2SYS
Calculated using seacarb after Nisumaa et al. (2010)
Carbon
inorganic
dissolved
Carbonate ion
Carbonate system computation flag
Carbon dioxide
Coast and continental shelf
Containers and aquaria (20-1000 L or < 1 m**2)
Crassostrea hongkongensis
Figure
Fugacity of carbon dioxide (water) at sea surface temperature (wet air)
Gene expression (incl. proteomics)
Growth/Morphology
Growth rate
standard deviation
Incubation duration
Laboratory experiment
Mollusca
North Pacific
OA-ICC
Ocean Acidification International Coordination Centre
Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)
Pelagos
pH
Potentiometric
Potentiometric titration
Protein name
Protein spots
Replicates
Salinity
Shell length
Single species
Species
Spot intensity
relative
description Ocean acidification (OA) is beginning to have noticeable negative impact on calcification rate, shell structure and physiological energy budgeting of several marine organisms; these alter the growth of many economically important shellfish including oysters. Early life stages of oysters may be particularly vulnerable to OA-driven low pH conditions because their shell is made up of the highly soluble form of calcium carbonate (CaCO3) mineral, aragonite. Our long-term CO2 perturbation experiment showed that larval shell growth rate of the oyster species Crassostrea hongkongensis was significantly reduced at pH < 7.9 compared to the control (8.2). To gain new insights into the underlying mechanisms of low-pH-induced delays in larval growth, we have examined the effect of pH on the protein expression pattern, including protein phosphorylation status at the pediveliger larval stage. Using two-dimensional electrophoresis and mass spectrometry, we demonstrated that the larval proteome was significantly altered by the two low pH treatments (7.9 and 7.6) compared to the control pH (8.2). Generally, the number of expressed proteins and their phosphorylation level decreased with low pH. Proteins involved in larval energy metabolism and calcification appeared to be down-regulated in response to low pH, whereas cell motility and production of cytoskeletal proteins were increased. This study on larval growth coupled with proteome change is the first step toward the search for novel Protein Expression Signatures indicative of low pH, which may help in understanding the mechanisms involved in low pH tolerance.
format Dataset
author Dineshram, R
Thiyagarajan, Vengatesen
Lane, Ackley Charles
Yu, Ziniu
Shu, Xiao
Leung, Priscilla TY
author_facet Dineshram, R
Thiyagarajan, Vengatesen
Lane, Ackley Charles
Yu, Ziniu
Shu, Xiao
Leung, Priscilla TY
author_sort Dineshram, R
title Elevated CO2 alters larval proteome and its phosphorylation status in the commercial oyster, Crassostrea hongkongensis
title_short Elevated CO2 alters larval proteome and its phosphorylation status in the commercial oyster, Crassostrea hongkongensis
title_full Elevated CO2 alters larval proteome and its phosphorylation status in the commercial oyster, Crassostrea hongkongensis
title_fullStr Elevated CO2 alters larval proteome and its phosphorylation status in the commercial oyster, Crassostrea hongkongensis
title_full_unstemmed Elevated CO2 alters larval proteome and its phosphorylation status in the commercial oyster, Crassostrea hongkongensis
title_sort elevated co2 alters larval proteome and its phosphorylation status in the commercial oyster, crassostrea hongkongensis
publisher PANGAEA
publishDate 2013
url https://doi.pangaea.de/10.1594/PANGAEA.831445
https://doi.org/10.1594/PANGAEA.831445
genre Ocean acidification
genre_facet Ocean acidification
op_source Supplement to: Dineshram, R; Thiyagarajan, Vengatesen; Lane, Ackley Charles; Yu, Ziniu; Shu, Xiao; Leung, Priscilla TY (2013): Elevated CO2 alters larval proteome and its phosphorylation status in the commercial oyster, Crassostrea hongkongensis. Marine Biology, 160(8), 2189-2205, https://doi.org/10.1007/s00227-013-2176-x
op_relation Lavigne, Héloïse; Gattuso, Jean-Pierre (2011): seacarb: seawater carbonate chemistry with R. R package version 2.4 [webpage]. https://cran.r-project.org/package=seacarb
https://doi.pangaea.de/10.1594/PANGAEA.831445
https://doi.org/10.1594/PANGAEA.831445
op_rights CC-BY-3.0: Creative Commons Attribution 3.0 Unported
Access constraints: unrestricted
info:eu-repo/semantics/openAccess
op_doi https://doi.org/10.1594/PANGAEA.83144510.1007/s00227-013-2176-x
_version_ 1810469428591067136