Effect of increased pCO2 on bacterial assemblage shifts in response to glucose addition in Fram Strait seawater mesocosms

Ocean acidification may stimulate primary production through increased availability of inorganic carbon in the photic zone, which may in turn change the biogenic flux of dissolved organic carbon (DOC) and the growth potential of heterotrophic bacteria. To investigate the effects of ocean acidificati...

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Main Authors: Ray, Jessica L, Töpper, Birte, An, Shu, Silyakova, Anna, Spindelböck, Joachim, Thyrhaug, Runar, DuBow, Michael S, Thingstad, Tron Frede, Sandaa, Ruth-Anne
Format: Dataset
Language:English
Published: PANGAEA 2012
Subjects:
EXP
pH
Online Access:https://doi.pangaea.de/10.1594/PANGAEA.831208
https://doi.org/10.1594/PANGAEA.831208
id ftpangaea:oai:pangaea.de:doi:10.1594/PANGAEA.831208
record_format openpolar
spelling ftpangaea:oai:pangaea.de:doi:10.1594/PANGAEA.831208 2024-09-15T18:04:23+00:00 Effect of increased pCO2 on bacterial assemblage shifts in response to glucose addition in Fram Strait seawater mesocosms Ray, Jessica L Töpper, Birte An, Shu Silyakova, Anna Spindelböck, Joachim Thyrhaug, Runar DuBow, Michael S Thingstad, Tron Frede Sandaa, Ruth-Anne LATITUDE: 76.930000 * LONGITUDE: -3.580000 * DATE/TIME START: 2009-06-01T00:00:00 * DATE/TIME END: 2009-06-30T00:00:00 2012 text/tab-separated-values, 112442 data points https://doi.pangaea.de/10.1594/PANGAEA.831208 https://doi.org/10.1594/PANGAEA.831208 en eng PANGAEA Lavigne, Héloïse; Gattuso, Jean-Pierre (2011): seacarb: seawater carbonate chemistry with R. R package version 2.4 [webpage]. https://cran.r-project.org/package=seacarb https://doi.pangaea.de/10.1594/PANGAEA.831208 https://doi.org/10.1594/PANGAEA.831208 CC-BY-3.0: Creative Commons Attribution 3.0 Unported Access constraints: unrestricted info:eu-repo/semantics/openAccess Supplement to: Ray, Jessica L; Töpper, Birte; An, Shu; Silyakova, Anna; Spindelböck, Joachim; Thyrhaug, Runar; DuBow, Michael S; Thingstad, Tron Frede; Sandaa, Ruth-Anne (2012): Effect of increased pCO2 on bacterial assemblage shifts in response to glucose addition in Fram Strait seawater mesocosms. FEMS Microbiology Ecology, 82(3), 713-723, https://doi.org/10.1111/j.1574-6941.2012.01443.x Algae abundance Alkalinity total Aragonite saturation state Arctic Bacteria abundance Bacterial production Bicarbonate ion Calcite saturation state Calculated using seacarb after Nisumaa et al. (2010) Carbon inorganic dissolved Carbonate ion Carbonate system computation flag Carbon dioxide Class Community composition and diversity Entire community EXP Experiment Family Field experiment Fram_Strait_OA Fugacity of carbon dioxide (water) at sea surface temperature (wet air) Gene expression (incl. proteomics) Incubation duration Mesocosm or benthocosm OA-ICC Ocean Acidification International Coordination Centre Open ocean Operational taxonomic unit Other metabolic rates Partial pressure of carbon dioxide (water) at sea surface temperature (wet air) Pelagos pH Phosphate Polar Salinity Sequence abundance Sequence coverage Silicate Species Temperature water Treatment dataset 2012 ftpangaea https://doi.org/10.1594/PANGAEA.83120810.1111/j.1574-6941.2012.01443.x 2024-07-24T02:31:32Z Ocean acidification may stimulate primary production through increased availability of inorganic carbon in the photic zone, which may in turn change the biogenic flux of dissolved organic carbon (DOC) and the growth potential of heterotrophic bacteria. To investigate the effects of ocean acidification on marine bacterial assemblages, a two-by-three factorial mescosom experiment was conducted using surface sea water from the East Greenland Current in Fram Strait. Pyrosequencing of the V1-V2 region of bacterial 16S ribosomal RNA genes was used to investigate differences in the endpoint (Day 9) composition of bacterial assemblages in mineral nutrient-replete mesocosms amended with glucose (0 µm, 5.3 µm and 15.9 µm) under ambient (250 µatm) or acidified (400 µatm) partial pressures of CO2 (pCO2). All mesocosms showed low richness and diversity by Chao1 estimator and Shannon index, respectively, with general dominance by Gammaproteobacteria and Flavobacteria. Nonmetric multidimensional scaling analysis and two-way analysis of variance of the Jaccard dissimilarity matrix (97% similarity cut-off) demonstrated that the significant community shift between 0 µm and 15.9 µm glucose addition at 250 µatm pCO2 was eliminated at 400 µatm pCO2. These results suggest that the response potential of marine bacteria to DOC input may be altered under acidified conditions. Dataset East Greenland east greenland current Fram Strait Greenland Ocean acidification Shannon PANGAEA - Data Publisher for Earth & Environmental Science ENVELOPE(-3.580000,-3.580000,76.930000,76.930000)
institution Open Polar
collection PANGAEA - Data Publisher for Earth & Environmental Science
op_collection_id ftpangaea
language English
topic Algae abundance
Alkalinity
total
Aragonite saturation state
Arctic
Bacteria
abundance
Bacterial production
Bicarbonate ion
Calcite saturation state
Calculated using seacarb after Nisumaa et al. (2010)
Carbon
inorganic
dissolved
Carbonate ion
Carbonate system computation flag
Carbon dioxide
Class
Community composition and diversity
Entire community
EXP
Experiment
Family
Field experiment
Fram_Strait_OA
Fugacity of carbon dioxide (water) at sea surface temperature (wet air)
Gene expression (incl. proteomics)
Incubation duration
Mesocosm or benthocosm
OA-ICC
Ocean Acidification International Coordination Centre
Open ocean
Operational taxonomic unit
Other metabolic rates
Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)
Pelagos
pH
Phosphate
Polar
Salinity
Sequence abundance
Sequence coverage
Silicate
Species
Temperature
water
Treatment
spellingShingle Algae abundance
Alkalinity
total
Aragonite saturation state
Arctic
Bacteria
abundance
Bacterial production
Bicarbonate ion
Calcite saturation state
Calculated using seacarb after Nisumaa et al. (2010)
Carbon
inorganic
dissolved
Carbonate ion
Carbonate system computation flag
Carbon dioxide
Class
Community composition and diversity
Entire community
EXP
Experiment
Family
Field experiment
Fram_Strait_OA
Fugacity of carbon dioxide (water) at sea surface temperature (wet air)
Gene expression (incl. proteomics)
Incubation duration
Mesocosm or benthocosm
OA-ICC
Ocean Acidification International Coordination Centre
Open ocean
Operational taxonomic unit
Other metabolic rates
Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)
Pelagos
pH
Phosphate
Polar
Salinity
Sequence abundance
Sequence coverage
Silicate
Species
Temperature
water
Treatment
Ray, Jessica L
Töpper, Birte
An, Shu
Silyakova, Anna
Spindelböck, Joachim
Thyrhaug, Runar
DuBow, Michael S
Thingstad, Tron Frede
Sandaa, Ruth-Anne
Effect of increased pCO2 on bacterial assemblage shifts in response to glucose addition in Fram Strait seawater mesocosms
topic_facet Algae abundance
Alkalinity
total
Aragonite saturation state
Arctic
Bacteria
abundance
Bacterial production
Bicarbonate ion
Calcite saturation state
Calculated using seacarb after Nisumaa et al. (2010)
Carbon
inorganic
dissolved
Carbonate ion
Carbonate system computation flag
Carbon dioxide
Class
Community composition and diversity
Entire community
EXP
Experiment
Family
Field experiment
Fram_Strait_OA
Fugacity of carbon dioxide (water) at sea surface temperature (wet air)
Gene expression (incl. proteomics)
Incubation duration
Mesocosm or benthocosm
OA-ICC
Ocean Acidification International Coordination Centre
Open ocean
Operational taxonomic unit
Other metabolic rates
Partial pressure of carbon dioxide (water) at sea surface temperature (wet air)
Pelagos
pH
Phosphate
Polar
Salinity
Sequence abundance
Sequence coverage
Silicate
Species
Temperature
water
Treatment
description Ocean acidification may stimulate primary production through increased availability of inorganic carbon in the photic zone, which may in turn change the biogenic flux of dissolved organic carbon (DOC) and the growth potential of heterotrophic bacteria. To investigate the effects of ocean acidification on marine bacterial assemblages, a two-by-three factorial mescosom experiment was conducted using surface sea water from the East Greenland Current in Fram Strait. Pyrosequencing of the V1-V2 region of bacterial 16S ribosomal RNA genes was used to investigate differences in the endpoint (Day 9) composition of bacterial assemblages in mineral nutrient-replete mesocosms amended with glucose (0 µm, 5.3 µm and 15.9 µm) under ambient (250 µatm) or acidified (400 µatm) partial pressures of CO2 (pCO2). All mesocosms showed low richness and diversity by Chao1 estimator and Shannon index, respectively, with general dominance by Gammaproteobacteria and Flavobacteria. Nonmetric multidimensional scaling analysis and two-way analysis of variance of the Jaccard dissimilarity matrix (97% similarity cut-off) demonstrated that the significant community shift between 0 µm and 15.9 µm glucose addition at 250 µatm pCO2 was eliminated at 400 µatm pCO2. These results suggest that the response potential of marine bacteria to DOC input may be altered under acidified conditions.
format Dataset
author Ray, Jessica L
Töpper, Birte
An, Shu
Silyakova, Anna
Spindelböck, Joachim
Thyrhaug, Runar
DuBow, Michael S
Thingstad, Tron Frede
Sandaa, Ruth-Anne
author_facet Ray, Jessica L
Töpper, Birte
An, Shu
Silyakova, Anna
Spindelböck, Joachim
Thyrhaug, Runar
DuBow, Michael S
Thingstad, Tron Frede
Sandaa, Ruth-Anne
author_sort Ray, Jessica L
title Effect of increased pCO2 on bacterial assemblage shifts in response to glucose addition in Fram Strait seawater mesocosms
title_short Effect of increased pCO2 on bacterial assemblage shifts in response to glucose addition in Fram Strait seawater mesocosms
title_full Effect of increased pCO2 on bacterial assemblage shifts in response to glucose addition in Fram Strait seawater mesocosms
title_fullStr Effect of increased pCO2 on bacterial assemblage shifts in response to glucose addition in Fram Strait seawater mesocosms
title_full_unstemmed Effect of increased pCO2 on bacterial assemblage shifts in response to glucose addition in Fram Strait seawater mesocosms
title_sort effect of increased pco2 on bacterial assemblage shifts in response to glucose addition in fram strait seawater mesocosms
publisher PANGAEA
publishDate 2012
url https://doi.pangaea.de/10.1594/PANGAEA.831208
https://doi.org/10.1594/PANGAEA.831208
op_coverage LATITUDE: 76.930000 * LONGITUDE: -3.580000 * DATE/TIME START: 2009-06-01T00:00:00 * DATE/TIME END: 2009-06-30T00:00:00
long_lat ENVELOPE(-3.580000,-3.580000,76.930000,76.930000)
genre East Greenland
east greenland current
Fram Strait
Greenland
Ocean acidification
Shannon
genre_facet East Greenland
east greenland current
Fram Strait
Greenland
Ocean acidification
Shannon
op_source Supplement to: Ray, Jessica L; Töpper, Birte; An, Shu; Silyakova, Anna; Spindelböck, Joachim; Thyrhaug, Runar; DuBow, Michael S; Thingstad, Tron Frede; Sandaa, Ruth-Anne (2012): Effect of increased pCO2 on bacterial assemblage shifts in response to glucose addition in Fram Strait seawater mesocosms. FEMS Microbiology Ecology, 82(3), 713-723, https://doi.org/10.1111/j.1574-6941.2012.01443.x
op_relation Lavigne, Héloïse; Gattuso, Jean-Pierre (2011): seacarb: seawater carbonate chemistry with R. R package version 2.4 [webpage]. https://cran.r-project.org/package=seacarb
https://doi.pangaea.de/10.1594/PANGAEA.831208
https://doi.org/10.1594/PANGAEA.831208
op_rights CC-BY-3.0: Creative Commons Attribution 3.0 Unported
Access constraints: unrestricted
info:eu-repo/semantics/openAccess
op_doi https://doi.org/10.1594/PANGAEA.83120810.1111/j.1574-6941.2012.01443.x
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