Effect of increased pCO2 on bacterial assemblage shifts in response to glucose addition in Fram Strait seawater mesocosms
Ocean acidification may stimulate primary production through increased availability of inorganic carbon in the photic zone, which may in turn change the biogenic flux of dissolved organic carbon (DOC) and the growth potential of heterotrophic bacteria. To investigate the effects of ocean acidificati...
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ftpangaea:oai:pangaea.de:doi:10.1594/PANGAEA.831208 2024-09-15T18:04:23+00:00 Effect of increased pCO2 on bacterial assemblage shifts in response to glucose addition in Fram Strait seawater mesocosms Ray, Jessica L Töpper, Birte An, Shu Silyakova, Anna Spindelböck, Joachim Thyrhaug, Runar DuBow, Michael S Thingstad, Tron Frede Sandaa, Ruth-Anne LATITUDE: 76.930000 * LONGITUDE: -3.580000 * DATE/TIME START: 2009-06-01T00:00:00 * DATE/TIME END: 2009-06-30T00:00:00 2012 text/tab-separated-values, 112442 data points https://doi.pangaea.de/10.1594/PANGAEA.831208 https://doi.org/10.1594/PANGAEA.831208 en eng PANGAEA Lavigne, Héloïse; Gattuso, Jean-Pierre (2011): seacarb: seawater carbonate chemistry with R. R package version 2.4 [webpage]. https://cran.r-project.org/package=seacarb https://doi.pangaea.de/10.1594/PANGAEA.831208 https://doi.org/10.1594/PANGAEA.831208 CC-BY-3.0: Creative Commons Attribution 3.0 Unported Access constraints: unrestricted info:eu-repo/semantics/openAccess Supplement to: Ray, Jessica L; Töpper, Birte; An, Shu; Silyakova, Anna; Spindelböck, Joachim; Thyrhaug, Runar; DuBow, Michael S; Thingstad, Tron Frede; Sandaa, Ruth-Anne (2012): Effect of increased pCO2 on bacterial assemblage shifts in response to glucose addition in Fram Strait seawater mesocosms. FEMS Microbiology Ecology, 82(3), 713-723, https://doi.org/10.1111/j.1574-6941.2012.01443.x Algae abundance Alkalinity total Aragonite saturation state Arctic Bacteria abundance Bacterial production Bicarbonate ion Calcite saturation state Calculated using seacarb after Nisumaa et al. (2010) Carbon inorganic dissolved Carbonate ion Carbonate system computation flag Carbon dioxide Class Community composition and diversity Entire community EXP Experiment Family Field experiment Fram_Strait_OA Fugacity of carbon dioxide (water) at sea surface temperature (wet air) Gene expression (incl. proteomics) Incubation duration Mesocosm or benthocosm OA-ICC Ocean Acidification International Coordination Centre Open ocean Operational taxonomic unit Other metabolic rates Partial pressure of carbon dioxide (water) at sea surface temperature (wet air) Pelagos pH Phosphate Polar Salinity Sequence abundance Sequence coverage Silicate Species Temperature water Treatment dataset 2012 ftpangaea https://doi.org/10.1594/PANGAEA.83120810.1111/j.1574-6941.2012.01443.x 2024-07-24T02:31:32Z Ocean acidification may stimulate primary production through increased availability of inorganic carbon in the photic zone, which may in turn change the biogenic flux of dissolved organic carbon (DOC) and the growth potential of heterotrophic bacteria. To investigate the effects of ocean acidification on marine bacterial assemblages, a two-by-three factorial mescosom experiment was conducted using surface sea water from the East Greenland Current in Fram Strait. Pyrosequencing of the V1-V2 region of bacterial 16S ribosomal RNA genes was used to investigate differences in the endpoint (Day 9) composition of bacterial assemblages in mineral nutrient-replete mesocosms amended with glucose (0 µm, 5.3 µm and 15.9 µm) under ambient (250 µatm) or acidified (400 µatm) partial pressures of CO2 (pCO2). All mesocosms showed low richness and diversity by Chao1 estimator and Shannon index, respectively, with general dominance by Gammaproteobacteria and Flavobacteria. Nonmetric multidimensional scaling analysis and two-way analysis of variance of the Jaccard dissimilarity matrix (97% similarity cut-off) demonstrated that the significant community shift between 0 µm and 15.9 µm glucose addition at 250 µatm pCO2 was eliminated at 400 µatm pCO2. These results suggest that the response potential of marine bacteria to DOC input may be altered under acidified conditions. Dataset East Greenland east greenland current Fram Strait Greenland Ocean acidification Shannon PANGAEA - Data Publisher for Earth & Environmental Science ENVELOPE(-3.580000,-3.580000,76.930000,76.930000) |
institution |
Open Polar |
collection |
PANGAEA - Data Publisher for Earth & Environmental Science |
op_collection_id |
ftpangaea |
language |
English |
topic |
Algae abundance Alkalinity total Aragonite saturation state Arctic Bacteria abundance Bacterial production Bicarbonate ion Calcite saturation state Calculated using seacarb after Nisumaa et al. (2010) Carbon inorganic dissolved Carbonate ion Carbonate system computation flag Carbon dioxide Class Community composition and diversity Entire community EXP Experiment Family Field experiment Fram_Strait_OA Fugacity of carbon dioxide (water) at sea surface temperature (wet air) Gene expression (incl. proteomics) Incubation duration Mesocosm or benthocosm OA-ICC Ocean Acidification International Coordination Centre Open ocean Operational taxonomic unit Other metabolic rates Partial pressure of carbon dioxide (water) at sea surface temperature (wet air) Pelagos pH Phosphate Polar Salinity Sequence abundance Sequence coverage Silicate Species Temperature water Treatment |
spellingShingle |
Algae abundance Alkalinity total Aragonite saturation state Arctic Bacteria abundance Bacterial production Bicarbonate ion Calcite saturation state Calculated using seacarb after Nisumaa et al. (2010) Carbon inorganic dissolved Carbonate ion Carbonate system computation flag Carbon dioxide Class Community composition and diversity Entire community EXP Experiment Family Field experiment Fram_Strait_OA Fugacity of carbon dioxide (water) at sea surface temperature (wet air) Gene expression (incl. proteomics) Incubation duration Mesocosm or benthocosm OA-ICC Ocean Acidification International Coordination Centre Open ocean Operational taxonomic unit Other metabolic rates Partial pressure of carbon dioxide (water) at sea surface temperature (wet air) Pelagos pH Phosphate Polar Salinity Sequence abundance Sequence coverage Silicate Species Temperature water Treatment Ray, Jessica L Töpper, Birte An, Shu Silyakova, Anna Spindelböck, Joachim Thyrhaug, Runar DuBow, Michael S Thingstad, Tron Frede Sandaa, Ruth-Anne Effect of increased pCO2 on bacterial assemblage shifts in response to glucose addition in Fram Strait seawater mesocosms |
topic_facet |
Algae abundance Alkalinity total Aragonite saturation state Arctic Bacteria abundance Bacterial production Bicarbonate ion Calcite saturation state Calculated using seacarb after Nisumaa et al. (2010) Carbon inorganic dissolved Carbonate ion Carbonate system computation flag Carbon dioxide Class Community composition and diversity Entire community EXP Experiment Family Field experiment Fram_Strait_OA Fugacity of carbon dioxide (water) at sea surface temperature (wet air) Gene expression (incl. proteomics) Incubation duration Mesocosm or benthocosm OA-ICC Ocean Acidification International Coordination Centre Open ocean Operational taxonomic unit Other metabolic rates Partial pressure of carbon dioxide (water) at sea surface temperature (wet air) Pelagos pH Phosphate Polar Salinity Sequence abundance Sequence coverage Silicate Species Temperature water Treatment |
description |
Ocean acidification may stimulate primary production through increased availability of inorganic carbon in the photic zone, which may in turn change the biogenic flux of dissolved organic carbon (DOC) and the growth potential of heterotrophic bacteria. To investigate the effects of ocean acidification on marine bacterial assemblages, a two-by-three factorial mescosom experiment was conducted using surface sea water from the East Greenland Current in Fram Strait. Pyrosequencing of the V1-V2 region of bacterial 16S ribosomal RNA genes was used to investigate differences in the endpoint (Day 9) composition of bacterial assemblages in mineral nutrient-replete mesocosms amended with glucose (0 µm, 5.3 µm and 15.9 µm) under ambient (250 µatm) or acidified (400 µatm) partial pressures of CO2 (pCO2). All mesocosms showed low richness and diversity by Chao1 estimator and Shannon index, respectively, with general dominance by Gammaproteobacteria and Flavobacteria. Nonmetric multidimensional scaling analysis and two-way analysis of variance of the Jaccard dissimilarity matrix (97% similarity cut-off) demonstrated that the significant community shift between 0 µm and 15.9 µm glucose addition at 250 µatm pCO2 was eliminated at 400 µatm pCO2. These results suggest that the response potential of marine bacteria to DOC input may be altered under acidified conditions. |
format |
Dataset |
author |
Ray, Jessica L Töpper, Birte An, Shu Silyakova, Anna Spindelböck, Joachim Thyrhaug, Runar DuBow, Michael S Thingstad, Tron Frede Sandaa, Ruth-Anne |
author_facet |
Ray, Jessica L Töpper, Birte An, Shu Silyakova, Anna Spindelböck, Joachim Thyrhaug, Runar DuBow, Michael S Thingstad, Tron Frede Sandaa, Ruth-Anne |
author_sort |
Ray, Jessica L |
title |
Effect of increased pCO2 on bacterial assemblage shifts in response to glucose addition in Fram Strait seawater mesocosms |
title_short |
Effect of increased pCO2 on bacterial assemblage shifts in response to glucose addition in Fram Strait seawater mesocosms |
title_full |
Effect of increased pCO2 on bacterial assemblage shifts in response to glucose addition in Fram Strait seawater mesocosms |
title_fullStr |
Effect of increased pCO2 on bacterial assemblage shifts in response to glucose addition in Fram Strait seawater mesocosms |
title_full_unstemmed |
Effect of increased pCO2 on bacterial assemblage shifts in response to glucose addition in Fram Strait seawater mesocosms |
title_sort |
effect of increased pco2 on bacterial assemblage shifts in response to glucose addition in fram strait seawater mesocosms |
publisher |
PANGAEA |
publishDate |
2012 |
url |
https://doi.pangaea.de/10.1594/PANGAEA.831208 https://doi.org/10.1594/PANGAEA.831208 |
op_coverage |
LATITUDE: 76.930000 * LONGITUDE: -3.580000 * DATE/TIME START: 2009-06-01T00:00:00 * DATE/TIME END: 2009-06-30T00:00:00 |
long_lat |
ENVELOPE(-3.580000,-3.580000,76.930000,76.930000) |
genre |
East Greenland east greenland current Fram Strait Greenland Ocean acidification Shannon |
genre_facet |
East Greenland east greenland current Fram Strait Greenland Ocean acidification Shannon |
op_source |
Supplement to: Ray, Jessica L; Töpper, Birte; An, Shu; Silyakova, Anna; Spindelböck, Joachim; Thyrhaug, Runar; DuBow, Michael S; Thingstad, Tron Frede; Sandaa, Ruth-Anne (2012): Effect of increased pCO2 on bacterial assemblage shifts in response to glucose addition in Fram Strait seawater mesocosms. FEMS Microbiology Ecology, 82(3), 713-723, https://doi.org/10.1111/j.1574-6941.2012.01443.x |
op_relation |
Lavigne, Héloïse; Gattuso, Jean-Pierre (2011): seacarb: seawater carbonate chemistry with R. R package version 2.4 [webpage]. https://cran.r-project.org/package=seacarb https://doi.pangaea.de/10.1594/PANGAEA.831208 https://doi.org/10.1594/PANGAEA.831208 |
op_rights |
CC-BY-3.0: Creative Commons Attribution 3.0 Unported Access constraints: unrestricted info:eu-repo/semantics/openAccess |
op_doi |
https://doi.org/10.1594/PANGAEA.83120810.1111/j.1574-6941.2012.01443.x |
_version_ |
1810441874000838656 |