Oligotrophic bacteria from the Antarctic Ocean
From enrichment cultures in dialysis chambers held in natural seawater tanks, 104 strains were isolated and kept in culture. All strains proved to be Gram-negative and psychrotrophic, having optimum growth temperatures of between 20 and 24 °C. Maximal growth temperatures were 30 to 37 °C, or even hi...
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ftpangaea:oai:pangaea.de:doi:10.1594/PANGAEA.745115 2023-05-15T13:42:10+02:00 Oligotrophic bacteria from the Antarctic Ocean Tan, Tjhing Lok Rüger, Hans-Jürgen MEDIAN LATITUDE: -66.459184 * MEDIAN LONGITUDE: 27.889713 * SOUTH-BOUND LATITUDE: -67.735000 * WEST-BOUND LONGITUDE: 8.890000 * NORTH-BOUND LATITUDE: -64.956700 * EAST-BOUND LONGITUDE: 37.460000 * DATE/TIME START: 1990-03-24T18:30:00 * DATE/TIME END: 1990-04-15T18:55:00 1999-09-10 application/zip, 2 datasets https://doi.pangaea.de/10.1594/PANGAEA.745115 https://doi.org/10.1594/PANGAEA.745115 en eng PANGAEA Tan, Tjhing Lok; Rüger, Hans-Jürgen (1999): Enrichment, isolation, and Biolog metabolic fingerprints of oligotrophic bacteria from the Antarctic Ocean. Advances in Limnology, 54, 255-272 https://doi.pangaea.de/10.1594/PANGAEA.745115 https://doi.org/10.1594/PANGAEA.745115 CC-BY-3.0: Creative Commons Attribution 3.0 Unported Access constraints: unrestricted info:eu-repo/semantics/openAccess CC-BY ANT-VIII/6 Cosmonaut Sea Indian Ocean Lazarev Sea Polarstern PS16 PS16/507 PS16/509 PS16/518 PS16/526 PS16/530 PS16/534 PS16/535 PS16/547 PS16/549 PS16/554 PS16/557 Riiser-Larsen Sea South Atlantic Ocean Water sample WS Dataset 1999 ftpangaea https://doi.org/10.1594/PANGAEA.745115 2023-01-20T07:31:53Z From enrichment cultures in dialysis chambers held in natural seawater tanks, 104 strains were isolated and kept in culture. All strains proved to be Gram-negative and psychrotrophic, having optimum growth temperatures of between 20 and 24 °C. Maximal growth temperatures were 30 to 37 °C, or even higher. With 55 isolates, substrate utilizations in Biolog MicroPlates were determined, and the obtained metabolic fingerprints used for clustering. Five groups could be distinguished at the 80% similarity level. Fifteen strains belonged to cluster 1, seven strains to cluster 2, and each of the clusters 3 and 4 contained nine strains. Cluster 5 can be divided into subcluster 5a and 5b, with 6 strains showing a few substrates metabolized, and 9 strains without any reactions, or weak reactions for one or two substrates, respectively. Each cluster could be characterized by specific metabolic fingerprints. Strains from cluster 1 metabolized N-acetyl-D-glucosamine, alpha-hydroxybutyric acid and gamma-hydroxybutyric acid, strains from cluster 2 citric acid, formic acid, thymidine and putrescine, strains from cluster 3 glycyl-L-aspartic acid, glycyl-L-glutamic acid, L-threonine and inosine, whereas strains from cluster 4 metabolized alpha-cyclodextrin and N-acetyl-D-galactosamine, typically. Methylamine was not utilized by the isolates, but strains from cluster 1, 2 and 3 could grow on basal seawater agar. Morphological characteristics and photomicrographs of the oligotrophic strains are presented. Due to their typical morphologies and ampicillin resistence, the nine strains from cluster 3 can be regarded as new species of the genus Planctomyces. These bacteria have not been cultivated before. Dataset Antarc* Antarctic Antarctic Ocean Cosmonaut sea Lazarev Sea Riiser-Larsen Sea South Atlantic Ocean PANGAEA - Data Publisher for Earth & Environmental Science Antarctic Antarctic Ocean Indian Lazarev ENVELOPE(12.917,12.917,-69.967,-69.967) Lazarev Sea ENVELOPE(7.000,7.000,-68.000,-68.000) Riiser-Larsen ENVELOPE(50.667,50.667,-66.783,-66.783) Riiser-Larsen Sea ENVELOPE(24.000,24.000,-68.000,-68.000) The Antarctic ENVELOPE(8.890000,37.460000,-64.956700,-67.735000) |
institution |
Open Polar |
collection |
PANGAEA - Data Publisher for Earth & Environmental Science |
op_collection_id |
ftpangaea |
language |
English |
topic |
ANT-VIII/6 Cosmonaut Sea Indian Ocean Lazarev Sea Polarstern PS16 PS16/507 PS16/509 PS16/518 PS16/526 PS16/530 PS16/534 PS16/535 PS16/547 PS16/549 PS16/554 PS16/557 Riiser-Larsen Sea South Atlantic Ocean Water sample WS |
spellingShingle |
ANT-VIII/6 Cosmonaut Sea Indian Ocean Lazarev Sea Polarstern PS16 PS16/507 PS16/509 PS16/518 PS16/526 PS16/530 PS16/534 PS16/535 PS16/547 PS16/549 PS16/554 PS16/557 Riiser-Larsen Sea South Atlantic Ocean Water sample WS Tan, Tjhing Lok Rüger, Hans-Jürgen Oligotrophic bacteria from the Antarctic Ocean |
topic_facet |
ANT-VIII/6 Cosmonaut Sea Indian Ocean Lazarev Sea Polarstern PS16 PS16/507 PS16/509 PS16/518 PS16/526 PS16/530 PS16/534 PS16/535 PS16/547 PS16/549 PS16/554 PS16/557 Riiser-Larsen Sea South Atlantic Ocean Water sample WS |
description |
From enrichment cultures in dialysis chambers held in natural seawater tanks, 104 strains were isolated and kept in culture. All strains proved to be Gram-negative and psychrotrophic, having optimum growth temperatures of between 20 and 24 °C. Maximal growth temperatures were 30 to 37 °C, or even higher. With 55 isolates, substrate utilizations in Biolog MicroPlates were determined, and the obtained metabolic fingerprints used for clustering. Five groups could be distinguished at the 80% similarity level. Fifteen strains belonged to cluster 1, seven strains to cluster 2, and each of the clusters 3 and 4 contained nine strains. Cluster 5 can be divided into subcluster 5a and 5b, with 6 strains showing a few substrates metabolized, and 9 strains without any reactions, or weak reactions for one or two substrates, respectively. Each cluster could be characterized by specific metabolic fingerprints. Strains from cluster 1 metabolized N-acetyl-D-glucosamine, alpha-hydroxybutyric acid and gamma-hydroxybutyric acid, strains from cluster 2 citric acid, formic acid, thymidine and putrescine, strains from cluster 3 glycyl-L-aspartic acid, glycyl-L-glutamic acid, L-threonine and inosine, whereas strains from cluster 4 metabolized alpha-cyclodextrin and N-acetyl-D-galactosamine, typically. Methylamine was not utilized by the isolates, but strains from cluster 1, 2 and 3 could grow on basal seawater agar. Morphological characteristics and photomicrographs of the oligotrophic strains are presented. Due to their typical morphologies and ampicillin resistence, the nine strains from cluster 3 can be regarded as new species of the genus Planctomyces. These bacteria have not been cultivated before. |
format |
Dataset |
author |
Tan, Tjhing Lok Rüger, Hans-Jürgen |
author_facet |
Tan, Tjhing Lok Rüger, Hans-Jürgen |
author_sort |
Tan, Tjhing Lok |
title |
Oligotrophic bacteria from the Antarctic Ocean |
title_short |
Oligotrophic bacteria from the Antarctic Ocean |
title_full |
Oligotrophic bacteria from the Antarctic Ocean |
title_fullStr |
Oligotrophic bacteria from the Antarctic Ocean |
title_full_unstemmed |
Oligotrophic bacteria from the Antarctic Ocean |
title_sort |
oligotrophic bacteria from the antarctic ocean |
publisher |
PANGAEA |
publishDate |
1999 |
url |
https://doi.pangaea.de/10.1594/PANGAEA.745115 https://doi.org/10.1594/PANGAEA.745115 |
op_coverage |
MEDIAN LATITUDE: -66.459184 * MEDIAN LONGITUDE: 27.889713 * SOUTH-BOUND LATITUDE: -67.735000 * WEST-BOUND LONGITUDE: 8.890000 * NORTH-BOUND LATITUDE: -64.956700 * EAST-BOUND LONGITUDE: 37.460000 * DATE/TIME START: 1990-03-24T18:30:00 * DATE/TIME END: 1990-04-15T18:55:00 |
long_lat |
ENVELOPE(12.917,12.917,-69.967,-69.967) ENVELOPE(7.000,7.000,-68.000,-68.000) ENVELOPE(50.667,50.667,-66.783,-66.783) ENVELOPE(24.000,24.000,-68.000,-68.000) ENVELOPE(8.890000,37.460000,-64.956700,-67.735000) |
geographic |
Antarctic Antarctic Ocean Indian Lazarev Lazarev Sea Riiser-Larsen Riiser-Larsen Sea The Antarctic |
geographic_facet |
Antarctic Antarctic Ocean Indian Lazarev Lazarev Sea Riiser-Larsen Riiser-Larsen Sea The Antarctic |
genre |
Antarc* Antarctic Antarctic Ocean Cosmonaut sea Lazarev Sea Riiser-Larsen Sea South Atlantic Ocean |
genre_facet |
Antarc* Antarctic Antarctic Ocean Cosmonaut sea Lazarev Sea Riiser-Larsen Sea South Atlantic Ocean |
op_relation |
Tan, Tjhing Lok; Rüger, Hans-Jürgen (1999): Enrichment, isolation, and Biolog metabolic fingerprints of oligotrophic bacteria from the Antarctic Ocean. Advances in Limnology, 54, 255-272 https://doi.pangaea.de/10.1594/PANGAEA.745115 https://doi.org/10.1594/PANGAEA.745115 |
op_rights |
CC-BY-3.0: Creative Commons Attribution 3.0 Unported Access constraints: unrestricted info:eu-repo/semantics/openAccess |
op_rightsnorm |
CC-BY |
op_doi |
https://doi.org/10.1594/PANGAEA.745115 |
_version_ |
1766163848370323456 |