The IsoGenie database: an interdisciplinary data management solution for ecosystems biology and environmental research
Modern microbial and ecosystem sciences require diverse interdisciplinary teams that are often challenged in “speaking” to one another due to different languages and data product types. Here we introduce the IsoGenie Database, a de novo developed data management and exploration platform, as a soluti...
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ftosti:oai:osti.gov:1647434 2023-07-30T04:01:52+02:00 The IsoGenie database: an interdisciplinary data management solution for ecosystems biology and environmental research Bolduc, Benjamin Hodgkins, Suzanne B. Varner, Ruth K. Crill, Patrick M. McCalley, Carmody K. Chanton, Jeffrey P. Tyson, Gene W. Riley, William J. Palace, Michael Duhaime, Melissa B. Hough, Moira A. Saleska, Scott R. Sullivan, Matthew B. Rich, Virginia I. 2021-04-07 application/pdf http://www.osti.gov/servlets/purl/1647434 https://www.osti.gov/biblio/1647434 https://doi.org/10.7717/peerj.9467 unknown http://www.osti.gov/servlets/purl/1647434 https://www.osti.gov/biblio/1647434 https://doi.org/10.7717/peerj.9467 doi:10.7717/peerj.9467 54 ENVIRONMENTAL SCIENCES 2021 ftosti https://doi.org/10.7717/peerj.9467 2023-07-11T09:45:07Z Modern microbial and ecosystem sciences require diverse interdisciplinary teams that are often challenged in “speaking” to one another due to different languages and data product types. Here we introduce the IsoGenie Database, a de novo developed data management and exploration platform, as a solution to this challenge of accurately representing and integrating heterogenous environmental and microbial data across ecosystem scales. The IsoGenieDB is a public and private data infrastructure designed to store and query data generated by the IsoGenie Project, a ~10 year DOE-funded project focused on discovering ecosystem climate feedbacks in a thawing permafrost landscape. The IsoGenieDB provides (i) a platform for IsoGenie Project members to explore the project’s interdisciplinary datasets across scales through the inherent relationships among data entities, (ii) a framework to consolidate and harmonize the datasets needed by the team’s modelers, and (iii) a public venue that leverages the same spatially explicit, disciplinarily integrated data structure to share published datasets. The IsoGenieDB is also being expanded to cover the NASA-funded Archaea to Atmosphere (A2A) project, which scales the findings of IsoGenie to a broader suite of Arctic peatlands, via the umbrella A2A Database (A2A-DB). The IsoGenieDB’s expandability and flexible architecture allow it to serve as an example ecosystems database. Other/Unknown Material Arctic permafrost SciTec Connect (Office of Scientific and Technical Information - OSTI, U.S. Department of Energy) Arctic PeerJ 8 e9467 |
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Open Polar |
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SciTec Connect (Office of Scientific and Technical Information - OSTI, U.S. Department of Energy) |
op_collection_id |
ftosti |
language |
unknown |
topic |
54 ENVIRONMENTAL SCIENCES |
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54 ENVIRONMENTAL SCIENCES Bolduc, Benjamin Hodgkins, Suzanne B. Varner, Ruth K. Crill, Patrick M. McCalley, Carmody K. Chanton, Jeffrey P. Tyson, Gene W. Riley, William J. Palace, Michael Duhaime, Melissa B. Hough, Moira A. Saleska, Scott R. Sullivan, Matthew B. Rich, Virginia I. The IsoGenie database: an interdisciplinary data management solution for ecosystems biology and environmental research |
topic_facet |
54 ENVIRONMENTAL SCIENCES |
description |
Modern microbial and ecosystem sciences require diverse interdisciplinary teams that are often challenged in “speaking” to one another due to different languages and data product types. Here we introduce the IsoGenie Database, a de novo developed data management and exploration platform, as a solution to this challenge of accurately representing and integrating heterogenous environmental and microbial data across ecosystem scales. The IsoGenieDB is a public and private data infrastructure designed to store and query data generated by the IsoGenie Project, a ~10 year DOE-funded project focused on discovering ecosystem climate feedbacks in a thawing permafrost landscape. The IsoGenieDB provides (i) a platform for IsoGenie Project members to explore the project’s interdisciplinary datasets across scales through the inherent relationships among data entities, (ii) a framework to consolidate and harmonize the datasets needed by the team’s modelers, and (iii) a public venue that leverages the same spatially explicit, disciplinarily integrated data structure to share published datasets. The IsoGenieDB is also being expanded to cover the NASA-funded Archaea to Atmosphere (A2A) project, which scales the findings of IsoGenie to a broader suite of Arctic peatlands, via the umbrella A2A Database (A2A-DB). The IsoGenieDB’s expandability and flexible architecture allow it to serve as an example ecosystems database. |
author |
Bolduc, Benjamin Hodgkins, Suzanne B. Varner, Ruth K. Crill, Patrick M. McCalley, Carmody K. Chanton, Jeffrey P. Tyson, Gene W. Riley, William J. Palace, Michael Duhaime, Melissa B. Hough, Moira A. Saleska, Scott R. Sullivan, Matthew B. Rich, Virginia I. |
author_facet |
Bolduc, Benjamin Hodgkins, Suzanne B. Varner, Ruth K. Crill, Patrick M. McCalley, Carmody K. Chanton, Jeffrey P. Tyson, Gene W. Riley, William J. Palace, Michael Duhaime, Melissa B. Hough, Moira A. Saleska, Scott R. Sullivan, Matthew B. Rich, Virginia I. |
author_sort |
Bolduc, Benjamin |
title |
The IsoGenie database: an interdisciplinary data management solution for ecosystems biology and environmental research |
title_short |
The IsoGenie database: an interdisciplinary data management solution for ecosystems biology and environmental research |
title_full |
The IsoGenie database: an interdisciplinary data management solution for ecosystems biology and environmental research |
title_fullStr |
The IsoGenie database: an interdisciplinary data management solution for ecosystems biology and environmental research |
title_full_unstemmed |
The IsoGenie database: an interdisciplinary data management solution for ecosystems biology and environmental research |
title_sort |
isogenie database: an interdisciplinary data management solution for ecosystems biology and environmental research |
publishDate |
2021 |
url |
http://www.osti.gov/servlets/purl/1647434 https://www.osti.gov/biblio/1647434 https://doi.org/10.7717/peerj.9467 |
geographic |
Arctic |
geographic_facet |
Arctic |
genre |
Arctic permafrost |
genre_facet |
Arctic permafrost |
op_relation |
http://www.osti.gov/servlets/purl/1647434 https://www.osti.gov/biblio/1647434 https://doi.org/10.7717/peerj.9467 doi:10.7717/peerj.9467 |
op_doi |
https://doi.org/10.7717/peerj.9467 |
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PeerJ |
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8 |
container_start_page |
e9467 |
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1772812614199410688 |