Inferring genetic connectivity in real populations, exemplified by coastal and oceanic Atlantic cod
Genetic data are commonly used to estimate connectivity between putative populations, but translating them to demographic dispersal rates is complicated. Theoretical equations that infer a migration rate based on the genetic estimator F, such as Wright’s equation, F ≈ 1/(4N + 1), make assumptions th...
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ftoslouniv:oai:www.duo.uio.no:10852/73400 2023-05-15T15:27:20+02:00 Inferring genetic connectivity in real populations, exemplified by coastal and oceanic Atlantic cod Spies, Ingrid Hauser, Lorenz Jorde, Per Erik Knutsen, Halvor Punt, André E. Rogers, Lauren Stenseth, Nils Christian 2018-07-04T10:45:39Z http://hdl.handle.net/10852/73400 http://urn.nb.no/URN:NBN:no-76524 https://doi.org/10.1073/pnas.1800096115 EN eng http://urn.nb.no/URN:NBN:no-76524 Spies, Ingrid Hauser, Lorenz Jorde, Per Erik Knutsen, Halvor Punt, André E. Rogers, Lauren Stenseth, Nils Christian . Inferring genetic connectivity in real populations, exemplified by coastal and oceanic Atlantic cod. Proceedings of the National Academy of Sciences of the United States of America. 2018, 115(19), 4945-4950 http://hdl.handle.net/10852/73400 1595565 info:ofi/fmt:kev:mtx:ctx&ctx_ver=Z39.88-2004&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.jtitle=Proceedings of the National Academy of Sciences of the United States of America&rft.volume=115&rft.spage=4945&rft.date=2018 Proceedings of the National Academy of Sciences of the United States of America 115 19 4945 4950 https://doi.org/10.1073/pnas.1800096115 URN:NBN:no-76524 Fulltext https://www.duo.uio.no/bitstream/handle/10852/73400/1/Inferring%2Bgenetic%2Bconnectivity.pdf Attribution-NonCommercial-NoDerivatives 4.0 International https://creativecommons.org/licenses/by-nc-nd/4.0/ CC-BY-NC-ND 0027-8424 Journal article Tidsskriftartikkel Peer reviewed PublishedVersion 2018 ftoslouniv https://doi.org/10.1073/pnas.1800096115 2020-06-21T08:53:40Z Genetic data are commonly used to estimate connectivity between putative populations, but translating them to demographic dispersal rates is complicated. Theoretical equations that infer a migration rate based on the genetic estimator F, such as Wright’s equation, F ≈ 1/(4N + 1), make assumptions that do not apply to most real populations. How complexities inherent to real populations affect migration was exemplified by Atlantic cod in the North Sea and Skagerrak and was examined within an age-structured model that incorporated genetic markers. Migration was determined under various scenarios by varying the number of simulated migrants until the mean simulated level of genetic differentiation matched a fixed level of genetic differentiation equal to empirical estimates. Parameters that decreased the N ratio (where N is the effective and N is the total population size), such as high fishing mortality and high fishing gear selectivity, increased the number of migrants required to achieve empirical levels of genetic differentiation. Higher maturity-at-age and lower selectivity increased N and decreased migration when genetic differentiation was fixed. Changes in natural mortality, fishing gear selectivity, and maturity-at-age within expected limits had a moderate effect on migration when genetic differentiation was held constant. Changes in population size had the greatest effect on the number of migrants to achieve fixed levels of F, particularly when genetic differentiation was low, F ≈ 10−3. Highly variable migration patterns, compared with constant migration, resulted in higher variance in genetic differentiation and higher extreme values. Results are compared with and provide insight into the use of theoretical equations to estimate migration among real populations. Article in Journal/Newspaper atlantic cod Universitet i Oslo: Digitale utgivelser ved UiO (DUO) Proceedings of the National Academy of Sciences 115 19 4945 4950 |
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Open Polar |
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Universitet i Oslo: Digitale utgivelser ved UiO (DUO) |
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ftoslouniv |
language |
English |
description |
Genetic data are commonly used to estimate connectivity between putative populations, but translating them to demographic dispersal rates is complicated. Theoretical equations that infer a migration rate based on the genetic estimator F, such as Wright’s equation, F ≈ 1/(4N + 1), make assumptions that do not apply to most real populations. How complexities inherent to real populations affect migration was exemplified by Atlantic cod in the North Sea and Skagerrak and was examined within an age-structured model that incorporated genetic markers. Migration was determined under various scenarios by varying the number of simulated migrants until the mean simulated level of genetic differentiation matched a fixed level of genetic differentiation equal to empirical estimates. Parameters that decreased the N ratio (where N is the effective and N is the total population size), such as high fishing mortality and high fishing gear selectivity, increased the number of migrants required to achieve empirical levels of genetic differentiation. Higher maturity-at-age and lower selectivity increased N and decreased migration when genetic differentiation was fixed. Changes in natural mortality, fishing gear selectivity, and maturity-at-age within expected limits had a moderate effect on migration when genetic differentiation was held constant. Changes in population size had the greatest effect on the number of migrants to achieve fixed levels of F, particularly when genetic differentiation was low, F ≈ 10−3. Highly variable migration patterns, compared with constant migration, resulted in higher variance in genetic differentiation and higher extreme values. Results are compared with and provide insight into the use of theoretical equations to estimate migration among real populations. |
format |
Article in Journal/Newspaper |
author |
Spies, Ingrid Hauser, Lorenz Jorde, Per Erik Knutsen, Halvor Punt, André E. Rogers, Lauren Stenseth, Nils Christian |
spellingShingle |
Spies, Ingrid Hauser, Lorenz Jorde, Per Erik Knutsen, Halvor Punt, André E. Rogers, Lauren Stenseth, Nils Christian Inferring genetic connectivity in real populations, exemplified by coastal and oceanic Atlantic cod |
author_facet |
Spies, Ingrid Hauser, Lorenz Jorde, Per Erik Knutsen, Halvor Punt, André E. Rogers, Lauren Stenseth, Nils Christian |
author_sort |
Spies, Ingrid |
title |
Inferring genetic connectivity in real populations, exemplified by coastal and oceanic Atlantic cod |
title_short |
Inferring genetic connectivity in real populations, exemplified by coastal and oceanic Atlantic cod |
title_full |
Inferring genetic connectivity in real populations, exemplified by coastal and oceanic Atlantic cod |
title_fullStr |
Inferring genetic connectivity in real populations, exemplified by coastal and oceanic Atlantic cod |
title_full_unstemmed |
Inferring genetic connectivity in real populations, exemplified by coastal and oceanic Atlantic cod |
title_sort |
inferring genetic connectivity in real populations, exemplified by coastal and oceanic atlantic cod |
publishDate |
2018 |
url |
http://hdl.handle.net/10852/73400 http://urn.nb.no/URN:NBN:no-76524 https://doi.org/10.1073/pnas.1800096115 |
genre |
atlantic cod |
genre_facet |
atlantic cod |
op_source |
0027-8424 |
op_relation |
http://urn.nb.no/URN:NBN:no-76524 Spies, Ingrid Hauser, Lorenz Jorde, Per Erik Knutsen, Halvor Punt, André E. Rogers, Lauren Stenseth, Nils Christian . Inferring genetic connectivity in real populations, exemplified by coastal and oceanic Atlantic cod. Proceedings of the National Academy of Sciences of the United States of America. 2018, 115(19), 4945-4950 http://hdl.handle.net/10852/73400 1595565 info:ofi/fmt:kev:mtx:ctx&ctx_ver=Z39.88-2004&rft_val_fmt=info:ofi/fmt:kev:mtx:journal&rft.jtitle=Proceedings of the National Academy of Sciences of the United States of America&rft.volume=115&rft.spage=4945&rft.date=2018 Proceedings of the National Academy of Sciences of the United States of America 115 19 4945 4950 https://doi.org/10.1073/pnas.1800096115 URN:NBN:no-76524 Fulltext https://www.duo.uio.no/bitstream/handle/10852/73400/1/Inferring%2Bgenetic%2Bconnectivity.pdf |
op_rights |
Attribution-NonCommercial-NoDerivatives 4.0 International https://creativecommons.org/licenses/by-nc-nd/4.0/ |
op_rightsnorm |
CC-BY-NC-ND |
op_doi |
https://doi.org/10.1073/pnas.1800096115 |
container_title |
Proceedings of the National Academy of Sciences |
container_volume |
115 |
container_issue |
19 |
container_start_page |
4945 |
op_container_end_page |
4950 |
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1766357786811170816 |