Novel diversity of polar Cyanobacteria revealed by genome-resolved metagenomics.
peer reviewed Benthic microbial mats dominated by Cyanobacteria are important features of polar lakes. Although culture-independent studies have provided important insights into the diversity of polar Cyanobacteria, only a handful of genomes have been sequenced to date. Here, we applied a genome-res...
Published in: | Microbial Genomics |
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Format: | Article in Journal/Newspaper |
Language: | English |
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Microbiology Society
2023
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Online Access: | https://orbi.uliege.be/handle/2268/305708 https://orbi.uliege.be/bitstream/2268/305708/1/mgen001056.pdf https://doi.org/10.1099/mgen.0.001056 |
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ftorbi:oai:orbi.ulg.ac.be:2268/305708 2024-04-21T07:49:03+00:00 Novel diversity of polar Cyanobacteria revealed by genome-resolved metagenomics. Pessi, Igor S Popin, Rafael V Durieu, Benoit Lara, Yannick Tytgat, Bjorn Savaglia, Valentina Roncero-Ramos, Beatriz Hultman, Jenni Verleyen, Elie Vyverman, Wim Wilmotte, Annick InBios - Integrative Biological Sciences - ULiège 2023-07 https://orbi.uliege.be/handle/2268/305708 https://orbi.uliege.be/bitstream/2268/305708/1/mgen001056.pdf https://doi.org/10.1099/mgen.0.001056 en eng Microbiology Society https://www.microbiologyresearch.org/content/journal/mgen/10.1099/mgen.0.001056?crawler=true&mimetype=application/pdf https://www.microbiologyresearch.org/content/journal/mgen/10.1099/mgen.0.001056#supplementary_data urn:issn:2057-5858 https://orbi.uliege.be/handle/2268/305708 info:hdl:2268/305708 https://orbi.uliege.be/bitstream/2268/305708/1/mgen001056.pdf doi:10.1099/mgen.0.001056 scopus-id:2-s2.0-85164255094 info:pmid:37417735 open access http://purl.org/coar/access_right/c_abf2 info:eu-repo/semantics/openAccess Microbial Genomics, 9 (7), 001056 (2023-07) Cyanobacteria metagenomics microbial mats polar regions Lakes/microbiology Metagenome Base Sequence Cyanobacteria/genetics General Medicine Life sciences Environmental sciences & ecology Biochemistry biophysics & molecular biology Microbiology Sciences du vivant Sciences de l’environnement & écologie Biochimie biophysique & biologie moléculaire Microbiologie journal article http://purl.org/coar/resource_type/c_6501 info:eu-repo/semantics/article peer reviewed 2023 ftorbi https://doi.org/10.1099/mgen.0.001056 2024-03-27T14:58:30Z peer reviewed Benthic microbial mats dominated by Cyanobacteria are important features of polar lakes. Although culture-independent studies have provided important insights into the diversity of polar Cyanobacteria, only a handful of genomes have been sequenced to date. Here, we applied a genome-resolved metagenomics approach to data obtained from Arctic, sub-Antarctic and Antarctic microbial mats. We recovered 37 metagenome-assembled genomes (MAGs) of Cyanobacteria representing 17 distinct species, most of which are only distantly related to genomes that have been sequenced so far. These include (i) lineages that are common in polar microbial mats such as the filamentous taxa Pseudanabaena, Leptolyngbya, Microcoleus/Tychonema and Phormidium; (ii) the less common taxa Crinalium and Chamaesiphon; (iii) an enigmatic Chroococcales lineage only distantly related to Microcystis; and (iv) an early branching lineage in the order Gloeobacterales that is distributed across the cold biosphere, for which we propose the name Candidatus Sivonenia alaskensis. Our results show that genome-resolved metagenomics is a powerful tool for expanding our understanding of the diversity of Cyanobacteria, especially in understudied remote and extreme environments. CCAMBIO BELSPO - AMBIO – SD/BA/01A BELSPO - CCAMBIO – SD/BA/03A BELSPO - PORTAL – B2/212 /P1/PORTAL EU-Interact project MiBiPol. I.S.P. 14. Life below water 15. Life on land Article in Journal/Newspaper Antarc* Antarctic University of Liège: ORBi (Open Repository and Bibliography) Microbial Genomics 9 7 |
institution |
Open Polar |
collection |
University of Liège: ORBi (Open Repository and Bibliography) |
op_collection_id |
ftorbi |
language |
English |
topic |
Cyanobacteria metagenomics microbial mats polar regions Lakes/microbiology Metagenome Base Sequence Cyanobacteria/genetics General Medicine Life sciences Environmental sciences & ecology Biochemistry biophysics & molecular biology Microbiology Sciences du vivant Sciences de l’environnement & écologie Biochimie biophysique & biologie moléculaire Microbiologie |
spellingShingle |
Cyanobacteria metagenomics microbial mats polar regions Lakes/microbiology Metagenome Base Sequence Cyanobacteria/genetics General Medicine Life sciences Environmental sciences & ecology Biochemistry biophysics & molecular biology Microbiology Sciences du vivant Sciences de l’environnement & écologie Biochimie biophysique & biologie moléculaire Microbiologie Pessi, Igor S Popin, Rafael V Durieu, Benoit Lara, Yannick Tytgat, Bjorn Savaglia, Valentina Roncero-Ramos, Beatriz Hultman, Jenni Verleyen, Elie Vyverman, Wim Wilmotte, Annick Novel diversity of polar Cyanobacteria revealed by genome-resolved metagenomics. |
topic_facet |
Cyanobacteria metagenomics microbial mats polar regions Lakes/microbiology Metagenome Base Sequence Cyanobacteria/genetics General Medicine Life sciences Environmental sciences & ecology Biochemistry biophysics & molecular biology Microbiology Sciences du vivant Sciences de l’environnement & écologie Biochimie biophysique & biologie moléculaire Microbiologie |
description |
peer reviewed Benthic microbial mats dominated by Cyanobacteria are important features of polar lakes. Although culture-independent studies have provided important insights into the diversity of polar Cyanobacteria, only a handful of genomes have been sequenced to date. Here, we applied a genome-resolved metagenomics approach to data obtained from Arctic, sub-Antarctic and Antarctic microbial mats. We recovered 37 metagenome-assembled genomes (MAGs) of Cyanobacteria representing 17 distinct species, most of which are only distantly related to genomes that have been sequenced so far. These include (i) lineages that are common in polar microbial mats such as the filamentous taxa Pseudanabaena, Leptolyngbya, Microcoleus/Tychonema and Phormidium; (ii) the less common taxa Crinalium and Chamaesiphon; (iii) an enigmatic Chroococcales lineage only distantly related to Microcystis; and (iv) an early branching lineage in the order Gloeobacterales that is distributed across the cold biosphere, for which we propose the name Candidatus Sivonenia alaskensis. Our results show that genome-resolved metagenomics is a powerful tool for expanding our understanding of the diversity of Cyanobacteria, especially in understudied remote and extreme environments. CCAMBIO BELSPO - AMBIO – SD/BA/01A BELSPO - CCAMBIO – SD/BA/03A BELSPO - PORTAL – B2/212 /P1/PORTAL EU-Interact project MiBiPol. I.S.P. 14. Life below water 15. Life on land |
author2 |
InBios - Integrative Biological Sciences - ULiège |
format |
Article in Journal/Newspaper |
author |
Pessi, Igor S Popin, Rafael V Durieu, Benoit Lara, Yannick Tytgat, Bjorn Savaglia, Valentina Roncero-Ramos, Beatriz Hultman, Jenni Verleyen, Elie Vyverman, Wim Wilmotte, Annick |
author_facet |
Pessi, Igor S Popin, Rafael V Durieu, Benoit Lara, Yannick Tytgat, Bjorn Savaglia, Valentina Roncero-Ramos, Beatriz Hultman, Jenni Verleyen, Elie Vyverman, Wim Wilmotte, Annick |
author_sort |
Pessi, Igor S |
title |
Novel diversity of polar Cyanobacteria revealed by genome-resolved metagenomics. |
title_short |
Novel diversity of polar Cyanobacteria revealed by genome-resolved metagenomics. |
title_full |
Novel diversity of polar Cyanobacteria revealed by genome-resolved metagenomics. |
title_fullStr |
Novel diversity of polar Cyanobacteria revealed by genome-resolved metagenomics. |
title_full_unstemmed |
Novel diversity of polar Cyanobacteria revealed by genome-resolved metagenomics. |
title_sort |
novel diversity of polar cyanobacteria revealed by genome-resolved metagenomics. |
publisher |
Microbiology Society |
publishDate |
2023 |
url |
https://orbi.uliege.be/handle/2268/305708 https://orbi.uliege.be/bitstream/2268/305708/1/mgen001056.pdf https://doi.org/10.1099/mgen.0.001056 |
genre |
Antarc* Antarctic |
genre_facet |
Antarc* Antarctic |
op_source |
Microbial Genomics, 9 (7), 001056 (2023-07) |
op_relation |
https://www.microbiologyresearch.org/content/journal/mgen/10.1099/mgen.0.001056?crawler=true&mimetype=application/pdf https://www.microbiologyresearch.org/content/journal/mgen/10.1099/mgen.0.001056#supplementary_data urn:issn:2057-5858 https://orbi.uliege.be/handle/2268/305708 info:hdl:2268/305708 https://orbi.uliege.be/bitstream/2268/305708/1/mgen001056.pdf doi:10.1099/mgen.0.001056 scopus-id:2-s2.0-85164255094 info:pmid:37417735 |
op_rights |
open access http://purl.org/coar/access_right/c_abf2 info:eu-repo/semantics/openAccess |
op_doi |
https://doi.org/10.1099/mgen.0.001056 |
container_title |
Microbial Genomics |
container_volume |
9 |
container_issue |
7 |
_version_ |
1796952906975412224 |