Novel diversity of polar Cyanobacteria revealed by genome-resolved metagenomics.

peer reviewed Benthic microbial mats dominated by Cyanobacteria are important features of polar lakes. Although culture-independent studies have provided important insights into the diversity of polar Cyanobacteria, only a handful of genomes have been sequenced to date. Here, we applied a genome-res...

Full description

Bibliographic Details
Published in:Microbial Genomics
Main Authors: Pessi, Igor S, Popin, Rafael V, Durieu, Benoit, Lara, Yannick, Tytgat, Bjorn, Savaglia, Valentina, Roncero-Ramos, Beatriz, Hultman, Jenni, Verleyen, Elie, Vyverman, Wim, Wilmotte, Annick
Other Authors: InBios - Integrative Biological Sciences - ULiège
Format: Article in Journal/Newspaper
Language:English
Published: Microbiology Society 2023
Subjects:
Online Access:https://orbi.uliege.be/handle/2268/305708
https://orbi.uliege.be/bitstream/2268/305708/1/mgen001056.pdf
https://doi.org/10.1099/mgen.0.001056
id ftorbi:oai:orbi.ulg.ac.be:2268/305708
record_format openpolar
spelling ftorbi:oai:orbi.ulg.ac.be:2268/305708 2024-04-21T07:49:03+00:00 Novel diversity of polar Cyanobacteria revealed by genome-resolved metagenomics. Pessi, Igor S Popin, Rafael V Durieu, Benoit Lara, Yannick Tytgat, Bjorn Savaglia, Valentina Roncero-Ramos, Beatriz Hultman, Jenni Verleyen, Elie Vyverman, Wim Wilmotte, Annick InBios - Integrative Biological Sciences - ULiège 2023-07 https://orbi.uliege.be/handle/2268/305708 https://orbi.uliege.be/bitstream/2268/305708/1/mgen001056.pdf https://doi.org/10.1099/mgen.0.001056 en eng Microbiology Society https://www.microbiologyresearch.org/content/journal/mgen/10.1099/mgen.0.001056?crawler=true&mimetype=application/pdf https://www.microbiologyresearch.org/content/journal/mgen/10.1099/mgen.0.001056#supplementary_data urn:issn:2057-5858 https://orbi.uliege.be/handle/2268/305708 info:hdl:2268/305708 https://orbi.uliege.be/bitstream/2268/305708/1/mgen001056.pdf doi:10.1099/mgen.0.001056 scopus-id:2-s2.0-85164255094 info:pmid:37417735 open access http://purl.org/coar/access_right/c_abf2 info:eu-repo/semantics/openAccess Microbial Genomics, 9 (7), 001056 (2023-07) Cyanobacteria metagenomics microbial mats polar regions Lakes/microbiology Metagenome Base Sequence Cyanobacteria/genetics General Medicine Life sciences Environmental sciences & ecology Biochemistry biophysics & molecular biology Microbiology Sciences du vivant Sciences de l’environnement & écologie Biochimie biophysique & biologie moléculaire Microbiologie journal article http://purl.org/coar/resource_type/c_6501 info:eu-repo/semantics/article peer reviewed 2023 ftorbi https://doi.org/10.1099/mgen.0.001056 2024-03-27T14:58:30Z peer reviewed Benthic microbial mats dominated by Cyanobacteria are important features of polar lakes. Although culture-independent studies have provided important insights into the diversity of polar Cyanobacteria, only a handful of genomes have been sequenced to date. Here, we applied a genome-resolved metagenomics approach to data obtained from Arctic, sub-Antarctic and Antarctic microbial mats. We recovered 37 metagenome-assembled genomes (MAGs) of Cyanobacteria representing 17 distinct species, most of which are only distantly related to genomes that have been sequenced so far. These include (i) lineages that are common in polar microbial mats such as the filamentous taxa Pseudanabaena, Leptolyngbya, Microcoleus/Tychonema and Phormidium; (ii) the less common taxa Crinalium and Chamaesiphon; (iii) an enigmatic Chroococcales lineage only distantly related to Microcystis; and (iv) an early branching lineage in the order Gloeobacterales that is distributed across the cold biosphere, for which we propose the name Candidatus Sivonenia alaskensis. Our results show that genome-resolved metagenomics is a powerful tool for expanding our understanding of the diversity of Cyanobacteria, especially in understudied remote and extreme environments. CCAMBIO BELSPO - AMBIO – SD/BA/01A BELSPO - CCAMBIO – SD/BA/03A BELSPO - PORTAL – B2/212 /P1/PORTAL EU-Interact project MiBiPol. I.S.P. 14. Life below water 15. Life on land Article in Journal/Newspaper Antarc* Antarctic University of Liège: ORBi (Open Repository and Bibliography) Microbial Genomics 9 7
institution Open Polar
collection University of Liège: ORBi (Open Repository and Bibliography)
op_collection_id ftorbi
language English
topic Cyanobacteria
metagenomics
microbial mats
polar regions
Lakes/microbiology
Metagenome
Base Sequence
Cyanobacteria/genetics
General Medicine
Life sciences
Environmental sciences & ecology
Biochemistry
biophysics & molecular biology
Microbiology
Sciences du vivant
Sciences de l’environnement & écologie
Biochimie
biophysique & biologie moléculaire
Microbiologie
spellingShingle Cyanobacteria
metagenomics
microbial mats
polar regions
Lakes/microbiology
Metagenome
Base Sequence
Cyanobacteria/genetics
General Medicine
Life sciences
Environmental sciences & ecology
Biochemistry
biophysics & molecular biology
Microbiology
Sciences du vivant
Sciences de l’environnement & écologie
Biochimie
biophysique & biologie moléculaire
Microbiologie
Pessi, Igor S
Popin, Rafael V
Durieu, Benoit
Lara, Yannick
Tytgat, Bjorn
Savaglia, Valentina
Roncero-Ramos, Beatriz
Hultman, Jenni
Verleyen, Elie
Vyverman, Wim
Wilmotte, Annick
Novel diversity of polar Cyanobacteria revealed by genome-resolved metagenomics.
topic_facet Cyanobacteria
metagenomics
microbial mats
polar regions
Lakes/microbiology
Metagenome
Base Sequence
Cyanobacteria/genetics
General Medicine
Life sciences
Environmental sciences & ecology
Biochemistry
biophysics & molecular biology
Microbiology
Sciences du vivant
Sciences de l’environnement & écologie
Biochimie
biophysique & biologie moléculaire
Microbiologie
description peer reviewed Benthic microbial mats dominated by Cyanobacteria are important features of polar lakes. Although culture-independent studies have provided important insights into the diversity of polar Cyanobacteria, only a handful of genomes have been sequenced to date. Here, we applied a genome-resolved metagenomics approach to data obtained from Arctic, sub-Antarctic and Antarctic microbial mats. We recovered 37 metagenome-assembled genomes (MAGs) of Cyanobacteria representing 17 distinct species, most of which are only distantly related to genomes that have been sequenced so far. These include (i) lineages that are common in polar microbial mats such as the filamentous taxa Pseudanabaena, Leptolyngbya, Microcoleus/Tychonema and Phormidium; (ii) the less common taxa Crinalium and Chamaesiphon; (iii) an enigmatic Chroococcales lineage only distantly related to Microcystis; and (iv) an early branching lineage in the order Gloeobacterales that is distributed across the cold biosphere, for which we propose the name Candidatus Sivonenia alaskensis. Our results show that genome-resolved metagenomics is a powerful tool for expanding our understanding of the diversity of Cyanobacteria, especially in understudied remote and extreme environments. CCAMBIO BELSPO - AMBIO – SD/BA/01A BELSPO - CCAMBIO – SD/BA/03A BELSPO - PORTAL – B2/212 /P1/PORTAL EU-Interact project MiBiPol. I.S.P. 14. Life below water 15. Life on land
author2 InBios - Integrative Biological Sciences - ULiège
format Article in Journal/Newspaper
author Pessi, Igor S
Popin, Rafael V
Durieu, Benoit
Lara, Yannick
Tytgat, Bjorn
Savaglia, Valentina
Roncero-Ramos, Beatriz
Hultman, Jenni
Verleyen, Elie
Vyverman, Wim
Wilmotte, Annick
author_facet Pessi, Igor S
Popin, Rafael V
Durieu, Benoit
Lara, Yannick
Tytgat, Bjorn
Savaglia, Valentina
Roncero-Ramos, Beatriz
Hultman, Jenni
Verleyen, Elie
Vyverman, Wim
Wilmotte, Annick
author_sort Pessi, Igor S
title Novel diversity of polar Cyanobacteria revealed by genome-resolved metagenomics.
title_short Novel diversity of polar Cyanobacteria revealed by genome-resolved metagenomics.
title_full Novel diversity of polar Cyanobacteria revealed by genome-resolved metagenomics.
title_fullStr Novel diversity of polar Cyanobacteria revealed by genome-resolved metagenomics.
title_full_unstemmed Novel diversity of polar Cyanobacteria revealed by genome-resolved metagenomics.
title_sort novel diversity of polar cyanobacteria revealed by genome-resolved metagenomics.
publisher Microbiology Society
publishDate 2023
url https://orbi.uliege.be/handle/2268/305708
https://orbi.uliege.be/bitstream/2268/305708/1/mgen001056.pdf
https://doi.org/10.1099/mgen.0.001056
genre Antarc*
Antarctic
genre_facet Antarc*
Antarctic
op_source Microbial Genomics, 9 (7), 001056 (2023-07)
op_relation https://www.microbiologyresearch.org/content/journal/mgen/10.1099/mgen.0.001056?crawler=true&mimetype=application/pdf
https://www.microbiologyresearch.org/content/journal/mgen/10.1099/mgen.0.001056#supplementary_data
urn:issn:2057-5858
https://orbi.uliege.be/handle/2268/305708
info:hdl:2268/305708
https://orbi.uliege.be/bitstream/2268/305708/1/mgen001056.pdf
doi:10.1099/mgen.0.001056
scopus-id:2-s2.0-85164255094
info:pmid:37417735
op_rights open access
http://purl.org/coar/access_right/c_abf2
info:eu-repo/semantics/openAccess
op_doi https://doi.org/10.1099/mgen.0.001056
container_title Microbial Genomics
container_volume 9
container_issue 7
_version_ 1796952906975412224