Complete mitochondrial genome and phylogenetic analysis of willow ptarmigan (Lagopus lagopus) and rock ptarmigan (Lagopus muta) (Galliformes: Phasianidae: Tetraoninae)
The complete mitochondrial genome sequences of the two sister species, Scandinavian willow ptarmigan Lagopus lagopus and Icelandic rock ptarmigan Lagopus muta, were characterized using next-generation sequencing. The mitogenome for willow ptarmigan was 16,677 bp long, with base composition of 30.3%...
Published in: | Mitochondrial DNA Part B |
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Informa UK Limited
2017
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Online Access: | https://hdl.handle.net/20.500.11815/2283 https://doi.org/10.1080/23802359.2017.1347834 |
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ftopinvisindi:oai:opinvisindi.is:20.500.11815/2283 2023-05-15T13:08:28+02:00 Complete mitochondrial genome and phylogenetic analysis of willow ptarmigan (Lagopus lagopus) and rock ptarmigan (Lagopus muta) (Galliformes: Phasianidae: Tetraoninae) Sveinsdóttir, Máney Magnússon, Kristinn Pétur Auðlindadeild (HA) Faculty of Natural Resource Sciences (UA) Viðskipta- og raunvísindasvið (HA) School of Business and Science (UA) Háskólinn á Akureyri University of Akureyri 2017-07-11 400-402 https://hdl.handle.net/20.500.11815/2283 https://doi.org/10.1080/23802359.2017.1347834 en eng Informa UK Limited Mitochondrial DNA Part B;2(2) https://www.tandfonline.com/doi/full/10.1080/23802359.2017.1347834 Sveinsdóttir, M., & Magnússon, K. P. (2017). Complete mitochondrial genome and phylogenetic analysis of willow ptarmigan (Lagopus lagopus) and rock ptarmigan (Lagopus muta) (Galliformes: Phasianidae: Tetraoninae). Mitochondrial DNA Part B, 2(2), 400-402. https://doi.org/10.1080/23802359.2017.1347834 2380-2359 https://hdl.handle.net/20.500.11815/2283 Mitochondrial DNA Part B doi:10.1080/23802359.2017.1347834 info:eu-repo/semantics/openAccess Ptarmigan Mitochondria Phylogeny Next generation sequencing Rjúpa Hvatberar info:eu-repo/semantics/article 2017 ftopinvisindi https://doi.org/20.500.11815/2283 https://doi.org/10.1080/23802359.2017.1347834 2022-11-18T06:52:04Z The complete mitochondrial genome sequences of the two sister species, Scandinavian willow ptarmigan Lagopus lagopus and Icelandic rock ptarmigan Lagopus muta, were characterized using next-generation sequencing. The mitogenome for willow ptarmigan was 16,677 bp long, with base composition of 30.3% A, 30.8% C, 13.3% G and 25.6% T, with a GC content of 44.1%, while for rock ptarmigan mitogenome was 16,687 bp long, with base composition of 30.2% A, 30.6% C, 13.4% G and 25.8% T, and a GC content of 44.0%. Like other Galliformes species, the mitogenomes comprised of 13 protein-coding genes, 22 tRNA, 2 rRNA and 2 non-coding regions; and control region (D-loop). All genes except ND6 and 8 tRNA were encoded on the þ strand. All protein-coding genes started with ATG, except for COX1, where a GTG codon was present in both willow ptarmigan and rock ptarmigan. Phylogenetic analysis of the two novel mitogenomes with other Galliformes species demonstrates close relationship within the Tetraoninae subfamily. Pálmi Jónsson Nature Conservation Fund and University of Akureyri Research Fund Peer Reviewed Article in Journal/Newspaper Akureyri Akureyri Lagopus muta rock ptarmigan University of Akureyri Opin vísindi (Iceland) Akureyri Mitochondrial DNA Part B 2 2 400 402 |
institution |
Open Polar |
collection |
Opin vísindi (Iceland) |
op_collection_id |
ftopinvisindi |
language |
English |
topic |
Ptarmigan Mitochondria Phylogeny Next generation sequencing Rjúpa Hvatberar |
spellingShingle |
Ptarmigan Mitochondria Phylogeny Next generation sequencing Rjúpa Hvatberar Sveinsdóttir, Máney Magnússon, Kristinn Pétur Complete mitochondrial genome and phylogenetic analysis of willow ptarmigan (Lagopus lagopus) and rock ptarmigan (Lagopus muta) (Galliformes: Phasianidae: Tetraoninae) |
topic_facet |
Ptarmigan Mitochondria Phylogeny Next generation sequencing Rjúpa Hvatberar |
description |
The complete mitochondrial genome sequences of the two sister species, Scandinavian willow ptarmigan Lagopus lagopus and Icelandic rock ptarmigan Lagopus muta, were characterized using next-generation sequencing. The mitogenome for willow ptarmigan was 16,677 bp long, with base composition of 30.3% A, 30.8% C, 13.3% G and 25.6% T, with a GC content of 44.1%, while for rock ptarmigan mitogenome was 16,687 bp long, with base composition of 30.2% A, 30.6% C, 13.4% G and 25.8% T, and a GC content of 44.0%. Like other Galliformes species, the mitogenomes comprised of 13 protein-coding genes, 22 tRNA, 2 rRNA and 2 non-coding regions; and control region (D-loop). All genes except ND6 and 8 tRNA were encoded on the þ strand. All protein-coding genes started with ATG, except for COX1, where a GTG codon was present in both willow ptarmigan and rock ptarmigan. Phylogenetic analysis of the two novel mitogenomes with other Galliformes species demonstrates close relationship within the Tetraoninae subfamily. Pálmi Jónsson Nature Conservation Fund and University of Akureyri Research Fund Peer Reviewed |
author2 |
Auðlindadeild (HA) Faculty of Natural Resource Sciences (UA) Viðskipta- og raunvísindasvið (HA) School of Business and Science (UA) Háskólinn á Akureyri University of Akureyri |
format |
Article in Journal/Newspaper |
author |
Sveinsdóttir, Máney Magnússon, Kristinn Pétur |
author_facet |
Sveinsdóttir, Máney Magnússon, Kristinn Pétur |
author_sort |
Sveinsdóttir, Máney |
title |
Complete mitochondrial genome and phylogenetic analysis of willow ptarmigan (Lagopus lagopus) and rock ptarmigan (Lagopus muta) (Galliformes: Phasianidae: Tetraoninae) |
title_short |
Complete mitochondrial genome and phylogenetic analysis of willow ptarmigan (Lagopus lagopus) and rock ptarmigan (Lagopus muta) (Galliformes: Phasianidae: Tetraoninae) |
title_full |
Complete mitochondrial genome and phylogenetic analysis of willow ptarmigan (Lagopus lagopus) and rock ptarmigan (Lagopus muta) (Galliformes: Phasianidae: Tetraoninae) |
title_fullStr |
Complete mitochondrial genome and phylogenetic analysis of willow ptarmigan (Lagopus lagopus) and rock ptarmigan (Lagopus muta) (Galliformes: Phasianidae: Tetraoninae) |
title_full_unstemmed |
Complete mitochondrial genome and phylogenetic analysis of willow ptarmigan (Lagopus lagopus) and rock ptarmigan (Lagopus muta) (Galliformes: Phasianidae: Tetraoninae) |
title_sort |
complete mitochondrial genome and phylogenetic analysis of willow ptarmigan (lagopus lagopus) and rock ptarmigan (lagopus muta) (galliformes: phasianidae: tetraoninae) |
publisher |
Informa UK Limited |
publishDate |
2017 |
url |
https://hdl.handle.net/20.500.11815/2283 https://doi.org/10.1080/23802359.2017.1347834 |
geographic |
Akureyri |
geographic_facet |
Akureyri |
genre |
Akureyri Akureyri Lagopus muta rock ptarmigan University of Akureyri |
genre_facet |
Akureyri Akureyri Lagopus muta rock ptarmigan University of Akureyri |
op_relation |
Mitochondrial DNA Part B;2(2) https://www.tandfonline.com/doi/full/10.1080/23802359.2017.1347834 Sveinsdóttir, M., & Magnússon, K. P. (2017). Complete mitochondrial genome and phylogenetic analysis of willow ptarmigan (Lagopus lagopus) and rock ptarmigan (Lagopus muta) (Galliformes: Phasianidae: Tetraoninae). Mitochondrial DNA Part B, 2(2), 400-402. https://doi.org/10.1080/23802359.2017.1347834 2380-2359 https://hdl.handle.net/20.500.11815/2283 Mitochondrial DNA Part B doi:10.1080/23802359.2017.1347834 |
op_rights |
info:eu-repo/semantics/openAccess |
op_doi |
https://doi.org/20.500.11815/2283 https://doi.org/10.1080/23802359.2017.1347834 |
container_title |
Mitochondrial DNA Part B |
container_volume |
2 |
container_issue |
2 |
container_start_page |
400 |
op_container_end_page |
402 |
_version_ |
1766092484935417856 |