ForCenS, a curated database of planktonic foraminifera census counts in marine surface sediment samples

Census counts of marine microfossils in surface sediments represent an invaluable resource for paleoceanography and for the investigation of macroecological processes. A prerequisite for such applications is the provision of data syntheses for individual microfossil groups. Specific to such synthese...

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Published in:Scientific Data
Main Authors: Siccha, Michael, Kucera, Michal
Format: Article in Journal/Newspaper
Language:English
Published: Nature Research 2017
Subjects:
Online Access:https://oceanrep.geomar.de/id/eprint/44292/
https://oceanrep.geomar.de/id/eprint/44292/1/sdata2017109.pdf
https://doi.org/10.1038/sdata.2017.109
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spelling ftoceanrep:oai:oceanrep.geomar.de:44292 2023-05-15T18:00:30+02:00 ForCenS, a curated database of planktonic foraminifera census counts in marine surface sediment samples Siccha, Michael Kucera, Michal 2017 text https://oceanrep.geomar.de/id/eprint/44292/ https://oceanrep.geomar.de/id/eprint/44292/1/sdata2017109.pdf https://doi.org/10.1038/sdata.2017.109 en eng Nature Research https://oceanrep.geomar.de/id/eprint/44292/1/sdata2017109.pdf Siccha, M. and Kucera, M. (2017) ForCenS, a curated database of planktonic foraminifera census counts in marine surface sediment samples. Open Access Scientific Data, 4 . Art.Nr. 170109. DOI 10.1038/sdata.2017.109 <https://doi.org/10.1038/sdata.2017.109>. doi:10.1038/sdata.2017.109 cc_by_4.0 info:eu-repo/semantics/openAccess Article PeerReviewed 2017 ftoceanrep https://doi.org/10.1038/sdata.2017.109 2023-04-07T15:41:22Z Census counts of marine microfossils in surface sediments represent an invaluable resource for paleoceanography and for the investigation of macroecological processes. A prerequisite for such applications is the provision of data syntheses for individual microfossil groups. Specific to such syntheses is the necessity of taxonomical harmonisation across the constituent datasets, coupled with dereplication of previous compilations. Both of these aspects require expert knowledge, but with increasing number of records involved in such syntheses, the application of expert knowledge via manual curation is not feasible. Here we present a synthesis of planktonic foraminifera census counts in surface sediment samples, which is taxonomically harmonised, dereplicated and treated for numerical and other inconsistencies. The data treatment is implemented as an objective and largely automated pipeline, allowing us to reduce the initial 6,984 records to 4,205 counts from unique sites and informative technical or true replicates. We provide the final product and document the procedure, which can be easily adopted for other microfossil data syntheses. Article in Journal/Newspaper Planktonic foraminifera OceanRep (GEOMAR Helmholtz Centre für Ocean Research Kiel) Scientific Data 4 1
institution Open Polar
collection OceanRep (GEOMAR Helmholtz Centre für Ocean Research Kiel)
op_collection_id ftoceanrep
language English
description Census counts of marine microfossils in surface sediments represent an invaluable resource for paleoceanography and for the investigation of macroecological processes. A prerequisite for such applications is the provision of data syntheses for individual microfossil groups. Specific to such syntheses is the necessity of taxonomical harmonisation across the constituent datasets, coupled with dereplication of previous compilations. Both of these aspects require expert knowledge, but with increasing number of records involved in such syntheses, the application of expert knowledge via manual curation is not feasible. Here we present a synthesis of planktonic foraminifera census counts in surface sediment samples, which is taxonomically harmonised, dereplicated and treated for numerical and other inconsistencies. The data treatment is implemented as an objective and largely automated pipeline, allowing us to reduce the initial 6,984 records to 4,205 counts from unique sites and informative technical or true replicates. We provide the final product and document the procedure, which can be easily adopted for other microfossil data syntheses.
format Article in Journal/Newspaper
author Siccha, Michael
Kucera, Michal
spellingShingle Siccha, Michael
Kucera, Michal
ForCenS, a curated database of planktonic foraminifera census counts in marine surface sediment samples
author_facet Siccha, Michael
Kucera, Michal
author_sort Siccha, Michael
title ForCenS, a curated database of planktonic foraminifera census counts in marine surface sediment samples
title_short ForCenS, a curated database of planktonic foraminifera census counts in marine surface sediment samples
title_full ForCenS, a curated database of planktonic foraminifera census counts in marine surface sediment samples
title_fullStr ForCenS, a curated database of planktonic foraminifera census counts in marine surface sediment samples
title_full_unstemmed ForCenS, a curated database of planktonic foraminifera census counts in marine surface sediment samples
title_sort forcens, a curated database of planktonic foraminifera census counts in marine surface sediment samples
publisher Nature Research
publishDate 2017
url https://oceanrep.geomar.de/id/eprint/44292/
https://oceanrep.geomar.de/id/eprint/44292/1/sdata2017109.pdf
https://doi.org/10.1038/sdata.2017.109
genre Planktonic foraminifera
genre_facet Planktonic foraminifera
op_relation https://oceanrep.geomar.de/id/eprint/44292/1/sdata2017109.pdf
Siccha, M. and Kucera, M. (2017) ForCenS, a curated database of planktonic foraminifera census counts in marine surface sediment samples. Open Access Scientific Data, 4 . Art.Nr. 170109. DOI 10.1038/sdata.2017.109 <https://doi.org/10.1038/sdata.2017.109>.
doi:10.1038/sdata.2017.109
op_rights cc_by_4.0
info:eu-repo/semantics/openAccess
op_doi https://doi.org/10.1038/sdata.2017.109
container_title Scientific Data
container_volume 4
container_issue 1
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