Use of microarray technology to assess the time course of liver stress response after confinement exposure in gilthead sea bream (Sparus aurata L.)
Background: Selection programs for growth and stress traits in cultured fish are fundamental to the improvement of aquaculture production. The gilthead sea bream ( Sparus aurata) is the main aquacultured species in the Mediterranean area and there is considerable interest in the genetic improvement...
Published in: | BMC Genomics |
---|---|
Main Authors: | , , , |
Other Authors: | |
Format: | Article in Journal/Newspaper |
Language: | English |
Published: |
BioMed Central
2016
|
Subjects: | |
Online Access: | http://hdl.handle.net/10379/5666 https://doi.org/10.1186/1471-2164-11-193 |
id |
ftnuigalway:oai:aran.library.nuigalway.ie/:10379/5666 |
---|---|
record_format |
openpolar |
spelling |
ftnuigalway:oai:aran.library.nuigalway.ie/:10379/5666 2023-06-11T04:10:20+02:00 Use of microarray technology to assess the time course of liver stress response after confinement exposure in gilthead sea bream (Sparus aurata L.) Davey, Grace Houeix, Benoit Talbot, Anita Cairns, Michael T. |~| 2016-04-12T19:52:42Z application/pdf http://hdl.handle.net/10379/5666 https://doi.org/10.1186/1471-2164-11-193 en eng BioMed Central BMC Genomics Calduch-Giner, JA,Davey, G,Saera-Vila, A,Houeix, B,Talbot, A,Prunet, P,Cairns, MT,Perez-Sanchez, J (2010) 'Use of microarray technology to assess the time course of liver stress response after confinement exposure in gilthead sea bream (Sparus aurata L.)'. BMC Genomics, 11 . 1471-2164 http://hdl.handle.net/10379/5666 doi:10.1186/1471-2164-11-193 Attribution-NonCommercial-NoDerivs 3.0 Ireland https://creativecommons.org/licenses/by-nc-nd/3.0/ie/ Trout oncorhynchus-mykiss Suppression subtractive hybridization Unfolded protein response Gene expression profile Retinol binding protein Rainbow trout Cortisol response Oxidative stress Atlantic salmon Plasma cortisol Biomedical science Article 2016 ftnuigalway https://doi.org/10.1186/1471-2164-11-193 2023-05-28T18:04:05Z Background: Selection programs for growth and stress traits in cultured fish are fundamental to the improvement of aquaculture production. The gilthead sea bream ( Sparus aurata) is the main aquacultured species in the Mediterranean area and there is considerable interest in the genetic improvement of this species. With the aim of increasing the genomic resources in gilthead sea bream and identifying genes and mechanisms underlying the physiology of the stress response, we developed a cDNA microarray for gilthead sea bream that is enriched by suppression substractive hybridization with stress and immunorelevant genes. This microarray is used to analyze the dynamics of gilthead sea bream liver expression profile after confinement exposure.Results: Groups of confined and control juvenile fish were sampled at 6, 24, 72 and 120 h post exposure. GeneSpring analyses identified 202 annotated genes that appeared differentially expressed at least at one sampling time (P This work was funded by EU (SSP98-CT-2004-513692; Combined genetic and functional genomic approaches for stress and disease resistance marker assisted selection in fish and shellfish, AQUAFIRST) and Spanish (Ingenio-2010 Programme; Improvement of Aquaculture Production by the use of biotechnological tools, AQUAGENOMICS) projects. AS-V was recipient of a Spanish PhD fellowship from the Diputación Provincial de Castellón. peer-reviewed Article in Journal/Newspaper Atlantic salmon National University of Ireland (NUI), Galway: ARAN BMC Genomics 11 1 193 |
institution |
Open Polar |
collection |
National University of Ireland (NUI), Galway: ARAN |
op_collection_id |
ftnuigalway |
language |
English |
topic |
Trout oncorhynchus-mykiss Suppression subtractive hybridization Unfolded protein response Gene expression profile Retinol binding protein Rainbow trout Cortisol response Oxidative stress Atlantic salmon Plasma cortisol Biomedical science |
spellingShingle |
Trout oncorhynchus-mykiss Suppression subtractive hybridization Unfolded protein response Gene expression profile Retinol binding protein Rainbow trout Cortisol response Oxidative stress Atlantic salmon Plasma cortisol Biomedical science Davey, Grace Houeix, Benoit Talbot, Anita Cairns, Michael T. Use of microarray technology to assess the time course of liver stress response after confinement exposure in gilthead sea bream (Sparus aurata L.) |
topic_facet |
Trout oncorhynchus-mykiss Suppression subtractive hybridization Unfolded protein response Gene expression profile Retinol binding protein Rainbow trout Cortisol response Oxidative stress Atlantic salmon Plasma cortisol Biomedical science |
description |
Background: Selection programs for growth and stress traits in cultured fish are fundamental to the improvement of aquaculture production. The gilthead sea bream ( Sparus aurata) is the main aquacultured species in the Mediterranean area and there is considerable interest in the genetic improvement of this species. With the aim of increasing the genomic resources in gilthead sea bream and identifying genes and mechanisms underlying the physiology of the stress response, we developed a cDNA microarray for gilthead sea bream that is enriched by suppression substractive hybridization with stress and immunorelevant genes. This microarray is used to analyze the dynamics of gilthead sea bream liver expression profile after confinement exposure.Results: Groups of confined and control juvenile fish were sampled at 6, 24, 72 and 120 h post exposure. GeneSpring analyses identified 202 annotated genes that appeared differentially expressed at least at one sampling time (P This work was funded by EU (SSP98-CT-2004-513692; Combined genetic and functional genomic approaches for stress and disease resistance marker assisted selection in fish and shellfish, AQUAFIRST) and Spanish (Ingenio-2010 Programme; Improvement of Aquaculture Production by the use of biotechnological tools, AQUAGENOMICS) projects. AS-V was recipient of a Spanish PhD fellowship from the Diputación Provincial de Castellón. peer-reviewed |
author2 |
|~| |
format |
Article in Journal/Newspaper |
author |
Davey, Grace Houeix, Benoit Talbot, Anita Cairns, Michael T. |
author_facet |
Davey, Grace Houeix, Benoit Talbot, Anita Cairns, Michael T. |
author_sort |
Davey, Grace |
title |
Use of microarray technology to assess the time course of liver stress response after confinement exposure in gilthead sea bream (Sparus aurata L.) |
title_short |
Use of microarray technology to assess the time course of liver stress response after confinement exposure in gilthead sea bream (Sparus aurata L.) |
title_full |
Use of microarray technology to assess the time course of liver stress response after confinement exposure in gilthead sea bream (Sparus aurata L.) |
title_fullStr |
Use of microarray technology to assess the time course of liver stress response after confinement exposure in gilthead sea bream (Sparus aurata L.) |
title_full_unstemmed |
Use of microarray technology to assess the time course of liver stress response after confinement exposure in gilthead sea bream (Sparus aurata L.) |
title_sort |
use of microarray technology to assess the time course of liver stress response after confinement exposure in gilthead sea bream (sparus aurata l.) |
publisher |
BioMed Central |
publishDate |
2016 |
url |
http://hdl.handle.net/10379/5666 https://doi.org/10.1186/1471-2164-11-193 |
genre |
Atlantic salmon |
genre_facet |
Atlantic salmon |
op_relation |
BMC Genomics Calduch-Giner, JA,Davey, G,Saera-Vila, A,Houeix, B,Talbot, A,Prunet, P,Cairns, MT,Perez-Sanchez, J (2010) 'Use of microarray technology to assess the time course of liver stress response after confinement exposure in gilthead sea bream (Sparus aurata L.)'. BMC Genomics, 11 . 1471-2164 http://hdl.handle.net/10379/5666 doi:10.1186/1471-2164-11-193 |
op_rights |
Attribution-NonCommercial-NoDerivs 3.0 Ireland https://creativecommons.org/licenses/by-nc-nd/3.0/ie/ |
op_doi |
https://doi.org/10.1186/1471-2164-11-193 |
container_title |
BMC Genomics |
container_volume |
11 |
container_issue |
1 |
container_start_page |
193 |
_version_ |
1768384684706758656 |