A 1-Dimensional Sympagic–Pelagic–Benthic Transport Model (SPBM): Coupled Simulation of Ice, Water Column, and Sediment Biogeochemistry, Suitable for Arctic Applications
Marine biogeochemical processes can strongly interact with processes occurring in adjacent ice and sediments. This is especially likely in areas with shallow water and frequent ice cover, both of which are common in the Arctic. Modeling tools are therefore required to simulate coupled biogeochemical...
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Online Access: | http://hdl.handle.net/11250/2629702 https://doi.org/10.3390/w11081582 |
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ftnorskinstvf:oai:niva.brage.unit.no:11250/2629702 2023-05-15T14:57:43+02:00 A 1-Dimensional Sympagic–Pelagic–Benthic Transport Model (SPBM): Coupled Simulation of Ice, Water Column, and Sediment Biogeochemistry, Suitable for Arctic Applications Yakubov, Shamil Wallhead, Philip Protsenko, Elizaveta Yakushev, Evgeniy Pakhomova, Svetlana Brix, Holger 2019 application/pdf http://hdl.handle.net/11250/2629702 https://doi.org/10.3390/w11081582 eng eng MDPI Water. 2019, 11 (8), 1582. urn:issn:2073-4441 http://hdl.handle.net/11250/2629702 https://doi.org/10.3390/w11081582 cristin:1740305 Navngivelse 4.0 Internasjonal http://creativecommons.org/licenses/by/4.0/deed.no © 2019 by the authors CC-BY 22 11 Water 8 Journal article Peer reviewed 2019 ftnorskinstvf https://doi.org/10.3390/w11081582 2023-02-21T08:45:14Z Marine biogeochemical processes can strongly interact with processes occurring in adjacent ice and sediments. This is especially likely in areas with shallow water and frequent ice cover, both of which are common in the Arctic. Modeling tools are therefore required to simulate coupled biogeochemical systems in ice, water, and sediment domains. We developed a 1D sympagic–pelagic–benthic transport model (SPBM) which uses input from physical model simulations to describe hydrodynamics and ice growth and modules from the Framework for Aquatic Biogeochemical Models (FABM) to construct a user-defined biogeochemical model. SPBM coupled with a biogeochemical model simulates the processes of vertical diffusion, sinking/burial, and biogeochemical transformations within and between the three domains. The potential utility of SPBM is demonstrated herein with two test runs using modules from the European regional seas ecosystem model (ERSEM) and the bottom-redox model biogeochemistry (BROM-biogeochemistry). The first run simulates multiple phytoplankton functional groups inhabiting the ice and water domains, while the second simulates detailed redox biogeochemistry in the ice, water, and sediments. SPBM is a flexible tool for integrated simulation of ice, water, and sediment biogeochemistry, and as such may help in producing well-parameterized biogeochemical models for regions with strong sympagic–pelagic–benthic interactions. publishedVersion Article in Journal/Newspaper Arctic Phytoplankton Norwegian Institute for Water research: NIVA Open Access Archive (Brage) Arctic Water 11 8 1582 |
institution |
Open Polar |
collection |
Norwegian Institute for Water research: NIVA Open Access Archive (Brage) |
op_collection_id |
ftnorskinstvf |
language |
English |
description |
Marine biogeochemical processes can strongly interact with processes occurring in adjacent ice and sediments. This is especially likely in areas with shallow water and frequent ice cover, both of which are common in the Arctic. Modeling tools are therefore required to simulate coupled biogeochemical systems in ice, water, and sediment domains. We developed a 1D sympagic–pelagic–benthic transport model (SPBM) which uses input from physical model simulations to describe hydrodynamics and ice growth and modules from the Framework for Aquatic Biogeochemical Models (FABM) to construct a user-defined biogeochemical model. SPBM coupled with a biogeochemical model simulates the processes of vertical diffusion, sinking/burial, and biogeochemical transformations within and between the three domains. The potential utility of SPBM is demonstrated herein with two test runs using modules from the European regional seas ecosystem model (ERSEM) and the bottom-redox model biogeochemistry (BROM-biogeochemistry). The first run simulates multiple phytoplankton functional groups inhabiting the ice and water domains, while the second simulates detailed redox biogeochemistry in the ice, water, and sediments. SPBM is a flexible tool for integrated simulation of ice, water, and sediment biogeochemistry, and as such may help in producing well-parameterized biogeochemical models for regions with strong sympagic–pelagic–benthic interactions. publishedVersion |
format |
Article in Journal/Newspaper |
author |
Yakubov, Shamil Wallhead, Philip Protsenko, Elizaveta Yakushev, Evgeniy Pakhomova, Svetlana Brix, Holger |
spellingShingle |
Yakubov, Shamil Wallhead, Philip Protsenko, Elizaveta Yakushev, Evgeniy Pakhomova, Svetlana Brix, Holger A 1-Dimensional Sympagic–Pelagic–Benthic Transport Model (SPBM): Coupled Simulation of Ice, Water Column, and Sediment Biogeochemistry, Suitable for Arctic Applications |
author_facet |
Yakubov, Shamil Wallhead, Philip Protsenko, Elizaveta Yakushev, Evgeniy Pakhomova, Svetlana Brix, Holger |
author_sort |
Yakubov, Shamil |
title |
A 1-Dimensional Sympagic–Pelagic–Benthic Transport Model (SPBM): Coupled Simulation of Ice, Water Column, and Sediment Biogeochemistry, Suitable for Arctic Applications |
title_short |
A 1-Dimensional Sympagic–Pelagic–Benthic Transport Model (SPBM): Coupled Simulation of Ice, Water Column, and Sediment Biogeochemistry, Suitable for Arctic Applications |
title_full |
A 1-Dimensional Sympagic–Pelagic–Benthic Transport Model (SPBM): Coupled Simulation of Ice, Water Column, and Sediment Biogeochemistry, Suitable for Arctic Applications |
title_fullStr |
A 1-Dimensional Sympagic–Pelagic–Benthic Transport Model (SPBM): Coupled Simulation of Ice, Water Column, and Sediment Biogeochemistry, Suitable for Arctic Applications |
title_full_unstemmed |
A 1-Dimensional Sympagic–Pelagic–Benthic Transport Model (SPBM): Coupled Simulation of Ice, Water Column, and Sediment Biogeochemistry, Suitable for Arctic Applications |
title_sort |
1-dimensional sympagic–pelagic–benthic transport model (spbm): coupled simulation of ice, water column, and sediment biogeochemistry, suitable for arctic applications |
publisher |
MDPI |
publishDate |
2019 |
url |
http://hdl.handle.net/11250/2629702 https://doi.org/10.3390/w11081582 |
geographic |
Arctic |
geographic_facet |
Arctic |
genre |
Arctic Phytoplankton |
genre_facet |
Arctic Phytoplankton |
op_source |
22 11 Water 8 |
op_relation |
Water. 2019, 11 (8), 1582. urn:issn:2073-4441 http://hdl.handle.net/11250/2629702 https://doi.org/10.3390/w11081582 cristin:1740305 |
op_rights |
Navngivelse 4.0 Internasjonal http://creativecommons.org/licenses/by/4.0/deed.no © 2019 by the authors |
op_rightsnorm |
CC-BY |
op_doi |
https://doi.org/10.3390/w11081582 |
container_title |
Water |
container_volume |
11 |
container_issue |
8 |
container_start_page |
1582 |
_version_ |
1766329836722192384 |