Fungal diversity present on rocks from a polar desert in continental Antarctica assessed using DNA metabarcoding.

We evaluated the fungal diversity associated with carbonate veins and two types of salt encrustation in rocks in a polar desert region of continental Antarctica using DNA a metabarcoding approach. We detected 262,268 reads grouped into 517 amplicon sequence variants (ASVs) assigned to the phyla Asco...

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Published in:Extremophiles
Main Authors: de Menezes, Graciéle Cunha Alves, Câmara, Paulo E.A.S., Pinto, Otávio Henrique Bezerra, Carvalho-Silva, Micheline, Oliveira, Fábio Soares, Souza, Caroline Delpupo, Schaefer, Carlos Ernesto G. Reynaud, Convey, Peter, Rosa, Carlos Augusto, Rosa, Luiz Henrique
Format: Article in Journal/Newspaper
Language:unknown
Published: Springer 2021
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Online Access:http://nora.nerc.ac.uk/id/eprint/528755/
https://link.springer.com/article/10.1007/s00792-021-01221-4
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spelling ftnerc:oai:nora.nerc.ac.uk:528755 2023-05-15T13:41:45+02:00 Fungal diversity present on rocks from a polar desert in continental Antarctica assessed using DNA metabarcoding. de Menezes, Graciéle Cunha Alves Câmara, Paulo E.A.S. Pinto, Otávio Henrique Bezerra Carvalho-Silva, Micheline Oliveira, Fábio Soares Souza, Caroline Delpupo Schaefer, Carlos Ernesto G. Reynaud Convey, Peter Rosa, Carlos Augusto Rosa, Luiz Henrique 2021-03-02 http://nora.nerc.ac.uk/id/eprint/528755/ https://link.springer.com/article/10.1007/s00792-021-01221-4 unknown Springer de Menezes, Graciéle Cunha Alves; Câmara, Paulo E.A.S.; Pinto, Otávio Henrique Bezerra; Carvalho-Silva, Micheline; Oliveira, Fábio Soares; Souza, Caroline Delpupo; Schaefer, Carlos Ernesto G. Reynaud; Convey, Peter orcid:0000-0001-8497-9903 Rosa, Carlos Augusto; Rosa, Luiz Henrique. 2021 Fungal diversity present on rocks from a polar desert in continental Antarctica assessed using DNA metabarcoding. Extremophiles, 25 (2). 193-202. https://doi.org/10.1007/s00792-021-01221-4 <https://doi.org/10.1007/s00792-021-01221-4> Publication - Article PeerReviewed 2021 ftnerc https://doi.org/10.1007/s00792-021-01221-4 2023-02-04T19:51:14Z We evaluated the fungal diversity associated with carbonate veins and two types of salt encrustation in rocks in a polar desert region of continental Antarctica using DNA a metabarcoding approach. We detected 262,268 reads grouped into 517 amplicon sequence variants (ASVs) assigned to the phyla Ascomycota, Basidiomycota, Mortierellomycota and Mucoromycota. Fourteen ASVs belonging to the genera Trichosporon, Mortierella, Penicillium, Aspergillus, Cladosporium, Coprinellus, Pleurotus and Pseudogymnoascus were assessed to be dominant taxa. The fungal communities of the three habitats sampled displayed high diversity indices when compared with other habitats of Antarctica, although differing in detail, with the highest diversity indices in the gypsum crust type 2. Only 48 of the 517 ASVs (9.28%) were detected in all three habitats, including dominant, intermediate and minor components. In contrast with previous studies of fungal communities living in the ultra-extreme conditions of continental Antarctica, application of metabarcoding revealed the DNA of a rich and complex resident fungal community. The ASVs detected included fungi with different ecological roles, with xerophilic, human- and animal-associated, phytopathogenic, saprotrophic, mutualistic, psychrotolerant and cosmopolitan taxa. This sequence diversity may be the result of deposition of fungal propagules over time driven by air currents, precipitation or human activities in the region. Article in Journal/Newspaper Antarc* Antarctica polar desert Natural Environment Research Council: NERC Open Research Archive Extremophiles 25 2 193 202
institution Open Polar
collection Natural Environment Research Council: NERC Open Research Archive
op_collection_id ftnerc
language unknown
description We evaluated the fungal diversity associated with carbonate veins and two types of salt encrustation in rocks in a polar desert region of continental Antarctica using DNA a metabarcoding approach. We detected 262,268 reads grouped into 517 amplicon sequence variants (ASVs) assigned to the phyla Ascomycota, Basidiomycota, Mortierellomycota and Mucoromycota. Fourteen ASVs belonging to the genera Trichosporon, Mortierella, Penicillium, Aspergillus, Cladosporium, Coprinellus, Pleurotus and Pseudogymnoascus were assessed to be dominant taxa. The fungal communities of the three habitats sampled displayed high diversity indices when compared with other habitats of Antarctica, although differing in detail, with the highest diversity indices in the gypsum crust type 2. Only 48 of the 517 ASVs (9.28%) were detected in all three habitats, including dominant, intermediate and minor components. In contrast with previous studies of fungal communities living in the ultra-extreme conditions of continental Antarctica, application of metabarcoding revealed the DNA of a rich and complex resident fungal community. The ASVs detected included fungi with different ecological roles, with xerophilic, human- and animal-associated, phytopathogenic, saprotrophic, mutualistic, psychrotolerant and cosmopolitan taxa. This sequence diversity may be the result of deposition of fungal propagules over time driven by air currents, precipitation or human activities in the region.
format Article in Journal/Newspaper
author de Menezes, Graciéle Cunha Alves
Câmara, Paulo E.A.S.
Pinto, Otávio Henrique Bezerra
Carvalho-Silva, Micheline
Oliveira, Fábio Soares
Souza, Caroline Delpupo
Schaefer, Carlos Ernesto G. Reynaud
Convey, Peter
Rosa, Carlos Augusto
Rosa, Luiz Henrique
spellingShingle de Menezes, Graciéle Cunha Alves
Câmara, Paulo E.A.S.
Pinto, Otávio Henrique Bezerra
Carvalho-Silva, Micheline
Oliveira, Fábio Soares
Souza, Caroline Delpupo
Schaefer, Carlos Ernesto G. Reynaud
Convey, Peter
Rosa, Carlos Augusto
Rosa, Luiz Henrique
Fungal diversity present on rocks from a polar desert in continental Antarctica assessed using DNA metabarcoding.
author_facet de Menezes, Graciéle Cunha Alves
Câmara, Paulo E.A.S.
Pinto, Otávio Henrique Bezerra
Carvalho-Silva, Micheline
Oliveira, Fábio Soares
Souza, Caroline Delpupo
Schaefer, Carlos Ernesto G. Reynaud
Convey, Peter
Rosa, Carlos Augusto
Rosa, Luiz Henrique
author_sort de Menezes, Graciéle Cunha Alves
title Fungal diversity present on rocks from a polar desert in continental Antarctica assessed using DNA metabarcoding.
title_short Fungal diversity present on rocks from a polar desert in continental Antarctica assessed using DNA metabarcoding.
title_full Fungal diversity present on rocks from a polar desert in continental Antarctica assessed using DNA metabarcoding.
title_fullStr Fungal diversity present on rocks from a polar desert in continental Antarctica assessed using DNA metabarcoding.
title_full_unstemmed Fungal diversity present on rocks from a polar desert in continental Antarctica assessed using DNA metabarcoding.
title_sort fungal diversity present on rocks from a polar desert in continental antarctica assessed using dna metabarcoding.
publisher Springer
publishDate 2021
url http://nora.nerc.ac.uk/id/eprint/528755/
https://link.springer.com/article/10.1007/s00792-021-01221-4
genre Antarc*
Antarctica
polar desert
genre_facet Antarc*
Antarctica
polar desert
op_relation de Menezes, Graciéle Cunha Alves; Câmara, Paulo E.A.S.; Pinto, Otávio Henrique Bezerra; Carvalho-Silva, Micheline; Oliveira, Fábio Soares; Souza, Caroline Delpupo; Schaefer, Carlos Ernesto G. Reynaud; Convey, Peter orcid:0000-0001-8497-9903
Rosa, Carlos Augusto; Rosa, Luiz Henrique. 2021 Fungal diversity present on rocks from a polar desert in continental Antarctica assessed using DNA metabarcoding. Extremophiles, 25 (2). 193-202. https://doi.org/10.1007/s00792-021-01221-4 <https://doi.org/10.1007/s00792-021-01221-4>
op_doi https://doi.org/10.1007/s00792-021-01221-4
container_title Extremophiles
container_volume 25
container_issue 2
container_start_page 193
op_container_end_page 202
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