The complete mitochondrial genome of the Antarctic springtail Cryptopygus antarcticus (Hexapoda: Collembola)
Background: Mitogenomics data, i.e. complete mitochondrial genome sequences, are popular molecular markers used for phylogenetic, phylogeographic and ecological studies in different animal lineages. Their comparative analysis has been used to shed light on the evolutionary history of given taxa and...
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ftnerc:oai:nora.nerc.ac.uk:11422 2023-05-15T13:45:10+02:00 The complete mitochondrial genome of the Antarctic springtail Cryptopygus antarcticus (Hexapoda: Collembola) Carapelli, Antonio Comandi, Sara Convey, Peter Nardi, Francesco Frati, Francesco 2008 text http://nora.nerc.ac.uk/id/eprint/11422/ https://nora.nerc.ac.uk/id/eprint/11422/1/1471-2164-9-315.pdf en eng BioMed Central Ltd https://nora.nerc.ac.uk/id/eprint/11422/1/1471-2164-9-315.pdf Carapelli, Antonio; Comandi, Sara; Convey, Peter orcid:0000-0001-8497-9903 Nardi, Francesco; Frati, Francesco. 2008 The complete mitochondrial genome of the Antarctic springtail Cryptopygus antarcticus (Hexapoda: Collembola). BMC Genomics, 9, 315. 12. https://doi.org/10.1186/1471-2164-9-315 <https://doi.org/10.1186/1471-2164-9-315> cc_by CC-BY Biology and Microbiology Zoology Publication - Article PeerReviewed 2008 ftnerc https://doi.org/10.1186/1471-2164-9-315 2023-02-04T19:27:21Z Background: Mitogenomics data, i.e. complete mitochondrial genome sequences, are popular molecular markers used for phylogenetic, phylogeographic and ecological studies in different animal lineages. Their comparative analysis has been used to shed light on the evolutionary history of given taxa and on the molecular processes that regulate the evolution of the mitochondrial genome. A considerable literature is available in the fields of invertebrate biochemical and ecophysiological adaptation to extreme environmental conditions, exemplified by those of the Antarctic. Nevertheless, limited molecular data are available from terrestrial Antarctic species, and this study represents the first attempt towards the description of a mitochondrial genome from one of the most widespread and common collembolan species of Antarctica. Results: In this study we describe the mitochondrial genome of the Antarctic collembolan Cryptopygus antarcticus Willem, 1901. The genome contains the standard set of 37 genes usually present in animal mtDNAs and a large non-coding fragment putatively corresponding to the region (A+T-rich) responsible for the control of replication and transcription. All genes are arranged in the gene order typical of Pancrustacea. Three additional short non-coding regions are present at gene junctions. Two of these are located in positions of abrupt shift of the coding polarity of genes oriented on opposite strands suggesting a role in the attenuation of the polycistronic mRNA transcription(s). In addition, remnants of an additional copy of trnL(uag) are present between trnS(uga) and nadl. Nucleotide composition is biased towards a high A% and T% (A+T = 70.9%), as typically found in hexapod mtDNAs. There is also a significant strand asymmetry, with the J-strand being more abundant in A and C. Within the A+T-rich region, some short sequence fragments appear to be similar (in position and primary sequence) to those involved in the origin of the N-strand replication of the Drosophila mtDNA. Conclusion: The ... Article in Journal/Newspaper Antarc* Antarctic Antarctic Springtail Antarctica antarcticus Cryptopygus antarcticus Springtail Natural Environment Research Council: NERC Open Research Archive Antarctic The Antarctic BMC Genomics 9 1 315 |
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Open Polar |
collection |
Natural Environment Research Council: NERC Open Research Archive |
op_collection_id |
ftnerc |
language |
English |
topic |
Biology and Microbiology Zoology |
spellingShingle |
Biology and Microbiology Zoology Carapelli, Antonio Comandi, Sara Convey, Peter Nardi, Francesco Frati, Francesco The complete mitochondrial genome of the Antarctic springtail Cryptopygus antarcticus (Hexapoda: Collembola) |
topic_facet |
Biology and Microbiology Zoology |
description |
Background: Mitogenomics data, i.e. complete mitochondrial genome sequences, are popular molecular markers used for phylogenetic, phylogeographic and ecological studies in different animal lineages. Their comparative analysis has been used to shed light on the evolutionary history of given taxa and on the molecular processes that regulate the evolution of the mitochondrial genome. A considerable literature is available in the fields of invertebrate biochemical and ecophysiological adaptation to extreme environmental conditions, exemplified by those of the Antarctic. Nevertheless, limited molecular data are available from terrestrial Antarctic species, and this study represents the first attempt towards the description of a mitochondrial genome from one of the most widespread and common collembolan species of Antarctica. Results: In this study we describe the mitochondrial genome of the Antarctic collembolan Cryptopygus antarcticus Willem, 1901. The genome contains the standard set of 37 genes usually present in animal mtDNAs and a large non-coding fragment putatively corresponding to the region (A+T-rich) responsible for the control of replication and transcription. All genes are arranged in the gene order typical of Pancrustacea. Three additional short non-coding regions are present at gene junctions. Two of these are located in positions of abrupt shift of the coding polarity of genes oriented on opposite strands suggesting a role in the attenuation of the polycistronic mRNA transcription(s). In addition, remnants of an additional copy of trnL(uag) are present between trnS(uga) and nadl. Nucleotide composition is biased towards a high A% and T% (A+T = 70.9%), as typically found in hexapod mtDNAs. There is also a significant strand asymmetry, with the J-strand being more abundant in A and C. Within the A+T-rich region, some short sequence fragments appear to be similar (in position and primary sequence) to those involved in the origin of the N-strand replication of the Drosophila mtDNA. Conclusion: The ... |
format |
Article in Journal/Newspaper |
author |
Carapelli, Antonio Comandi, Sara Convey, Peter Nardi, Francesco Frati, Francesco |
author_facet |
Carapelli, Antonio Comandi, Sara Convey, Peter Nardi, Francesco Frati, Francesco |
author_sort |
Carapelli, Antonio |
title |
The complete mitochondrial genome of the Antarctic springtail Cryptopygus antarcticus (Hexapoda: Collembola) |
title_short |
The complete mitochondrial genome of the Antarctic springtail Cryptopygus antarcticus (Hexapoda: Collembola) |
title_full |
The complete mitochondrial genome of the Antarctic springtail Cryptopygus antarcticus (Hexapoda: Collembola) |
title_fullStr |
The complete mitochondrial genome of the Antarctic springtail Cryptopygus antarcticus (Hexapoda: Collembola) |
title_full_unstemmed |
The complete mitochondrial genome of the Antarctic springtail Cryptopygus antarcticus (Hexapoda: Collembola) |
title_sort |
complete mitochondrial genome of the antarctic springtail cryptopygus antarcticus (hexapoda: collembola) |
publisher |
BioMed Central Ltd |
publishDate |
2008 |
url |
http://nora.nerc.ac.uk/id/eprint/11422/ https://nora.nerc.ac.uk/id/eprint/11422/1/1471-2164-9-315.pdf |
geographic |
Antarctic The Antarctic |
geographic_facet |
Antarctic The Antarctic |
genre |
Antarc* Antarctic Antarctic Springtail Antarctica antarcticus Cryptopygus antarcticus Springtail |
genre_facet |
Antarc* Antarctic Antarctic Springtail Antarctica antarcticus Cryptopygus antarcticus Springtail |
op_relation |
https://nora.nerc.ac.uk/id/eprint/11422/1/1471-2164-9-315.pdf Carapelli, Antonio; Comandi, Sara; Convey, Peter orcid:0000-0001-8497-9903 Nardi, Francesco; Frati, Francesco. 2008 The complete mitochondrial genome of the Antarctic springtail Cryptopygus antarcticus (Hexapoda: Collembola). BMC Genomics, 9, 315. 12. https://doi.org/10.1186/1471-2164-9-315 <https://doi.org/10.1186/1471-2164-9-315> |
op_rights |
cc_by |
op_rightsnorm |
CC-BY |
op_doi |
https://doi.org/10.1186/1471-2164-9-315 |
container_title |
BMC Genomics |
container_volume |
9 |
container_issue |
1 |
container_start_page |
315 |
_version_ |
1766214550840934400 |