Metagenomics of bolidophyceae in plankton and ice of the White Sea
© 2017, Pleiades Publishing, Ltd. The molecular diversity of poorly studied algae of Bolidophyceae class was first estimated by Illumina sequencing of V4 region of 18S rRNA gene in ice, under-ice water and summer water of the subarctic White Sea. We used two clustering thresholds–93 and 97%–and reve...
Main Authors: | , , , , |
---|---|
Format: | Article in Journal/Newspaper |
Language: | unknown |
Published: |
2017
|
Subjects: | |
Online Access: | https://openrepository.ru/article?id=167220 |
id |
ftneicon:oai:rour.neicon.ru:rour/167220 |
---|---|
record_format |
openpolar |
spelling |
ftneicon:oai:rour.neicon.ru:rour/167220 2023-05-15T18:28:19+02:00 Metagenomics of bolidophyceae in plankton and ice of the White Sea Belevich T. Ilyash L. Milyutina I. Logacheva M. Troitsky A. 2017 https://openrepository.ru/article?id=167220 unknown Biochemistry (Moscow) 12 1538 82 0006-2979 https://openrepository.ru/article?id=167220 SCOPUS00062979-2017-82-12-SID85038434556 Bolidophyceae metagenomic analysis picophytoplankton Triparma pacifica Triparma strigata White Sea Article 2017 ftneicon 2020-07-21T11:57:21Z © 2017, Pleiades Publishing, Ltd. The molecular diversity of poorly studied algae of Bolidophyceae class was first estimated by Illumina sequencing of V4 region of 18S rRNA gene in ice, under-ice water and summer water of the subarctic White Sea. We used two clustering thresholds–93 and 97%–and revealed 31 phylotypes of Bolidophyceae. Triparma pacifica and Т. strigata were identified to species level. The association of individual phylotypes to certain biotopes (ice or plankton) and stages of seasonal succession (under ice or summer plankton) has been established. Some phylotypes are found in different biotopes and over a wide temperature range. Due to changing their genetic composition, Bolidophyceae are a constant component of the photoautotrophic plankton and ice communities. Article in Journal/Newspaper Subarctic White Sea NORA (National aggregator of open repositories of Russian universities) Pleiades ENVELOPE(165.533,165.533,-72.700,-72.700) White Sea |
institution |
Open Polar |
collection |
NORA (National aggregator of open repositories of Russian universities) |
op_collection_id |
ftneicon |
language |
unknown |
topic |
Bolidophyceae metagenomic analysis picophytoplankton Triparma pacifica Triparma strigata White Sea |
spellingShingle |
Bolidophyceae metagenomic analysis picophytoplankton Triparma pacifica Triparma strigata White Sea Belevich T. Ilyash L. Milyutina I. Logacheva M. Troitsky A. Metagenomics of bolidophyceae in plankton and ice of the White Sea |
topic_facet |
Bolidophyceae metagenomic analysis picophytoplankton Triparma pacifica Triparma strigata White Sea |
description |
© 2017, Pleiades Publishing, Ltd. The molecular diversity of poorly studied algae of Bolidophyceae class was first estimated by Illumina sequencing of V4 region of 18S rRNA gene in ice, under-ice water and summer water of the subarctic White Sea. We used two clustering thresholds–93 and 97%–and revealed 31 phylotypes of Bolidophyceae. Triparma pacifica and Т. strigata were identified to species level. The association of individual phylotypes to certain biotopes (ice or plankton) and stages of seasonal succession (under ice or summer plankton) has been established. Some phylotypes are found in different biotopes and over a wide temperature range. Due to changing their genetic composition, Bolidophyceae are a constant component of the photoautotrophic plankton and ice communities. |
format |
Article in Journal/Newspaper |
author |
Belevich T. Ilyash L. Milyutina I. Logacheva M. Troitsky A. |
author_facet |
Belevich T. Ilyash L. Milyutina I. Logacheva M. Troitsky A. |
author_sort |
Belevich T. |
title |
Metagenomics of bolidophyceae in plankton and ice of the White Sea |
title_short |
Metagenomics of bolidophyceae in plankton and ice of the White Sea |
title_full |
Metagenomics of bolidophyceae in plankton and ice of the White Sea |
title_fullStr |
Metagenomics of bolidophyceae in plankton and ice of the White Sea |
title_full_unstemmed |
Metagenomics of bolidophyceae in plankton and ice of the White Sea |
title_sort |
metagenomics of bolidophyceae in plankton and ice of the white sea |
publishDate |
2017 |
url |
https://openrepository.ru/article?id=167220 |
long_lat |
ENVELOPE(165.533,165.533,-72.700,-72.700) |
geographic |
Pleiades White Sea |
geographic_facet |
Pleiades White Sea |
genre |
Subarctic White Sea |
genre_facet |
Subarctic White Sea |
op_source |
SCOPUS00062979-2017-82-12-SID85038434556 |
op_relation |
Biochemistry (Moscow) 12 1538 82 0006-2979 https://openrepository.ru/article?id=167220 |
_version_ |
1766210729811116032 |