Ancient DNA of narrow-headed vole reveal common features of the Late Pleistocene population dynamics in cold-adapted small mammals.
International audience The narrow-headed vole, collared lemming and common vole were the most abundant small mammal species across the Eurasian Late Pleistocene steppe-tundra environment. Previous ancient DNA studies of the collared lemming and common vole have revealed dynamic population histories...
Published in: | Proceedings of the Royal Society B: Biological Sciences |
---|---|
Main Authors: | , , , , , , , , , , , , , , , , , , , , , , , , , , , |
Other Authors: | , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , , |
Format: | Article in Journal/Newspaper |
Language: | English |
Published: |
HAL CCSD
2023
|
Subjects: | |
Online Access: | https://u-bourgogne.hal.science/hal-04064818 https://doi.org/10.1098/rspb.2022.2238 |
id |
ftmuseumnhn:oai:HAL:hal-04064818v1 |
---|---|
record_format |
openpolar |
institution |
Open Polar |
collection |
Muséum National d'Histoire Naturelle (MNHM): HAL |
op_collection_id |
ftmuseumnhn |
language |
English |
topic |
Pleistocene climate change habitat interstadials mitochondrial DNA paleoclimate MESH: Animals MESH: DNA Ancient MESH: Arvicolinae MESH: Bayes Theorem MESH: Phylogeny MESH: Population Dynamics Mitochondrial MESH: Genetic Variation [SDU.STU.PG]Sciences of the Universe [physics]/Earth Sciences/Paleontology |
spellingShingle |
Pleistocene climate change habitat interstadials mitochondrial DNA paleoclimate MESH: Animals MESH: DNA Ancient MESH: Arvicolinae MESH: Bayes Theorem MESH: Phylogeny MESH: Population Dynamics Mitochondrial MESH: Genetic Variation [SDU.STU.PG]Sciences of the Universe [physics]/Earth Sciences/Paleontology Baca, Mateusz Popović, Danijela Agadzhanyan, Alexander K. Baca, Katarzyna Conard, Nicholas J. Fewlass, Helen Filek, Thomas Golubiński, Michał Horáček, Ivan Knul, Monika V. Krajcarz, Magdalena Krokhaleva, Maria Lebreton, Loïc Lemanik, Anna Maul, Lutz C. Nagel, Doris Noiret, Pierre Primault, Jérome Rekovets, Leonid Rhodes, Sara E. Royer, Aurélien Serdyuk, Natalia V. Soressi, Marie Stewart, John R. Strukova, Tatiana Talamo, Sahra Wilczyński, Jarosław Nadachowski, Adam Ancient DNA of narrow-headed vole reveal common features of the Late Pleistocene population dynamics in cold-adapted small mammals. |
topic_facet |
Pleistocene climate change habitat interstadials mitochondrial DNA paleoclimate MESH: Animals MESH: DNA Ancient MESH: Arvicolinae MESH: Bayes Theorem MESH: Phylogeny MESH: Population Dynamics Mitochondrial MESH: Genetic Variation [SDU.STU.PG]Sciences of the Universe [physics]/Earth Sciences/Paleontology |
description |
International audience The narrow-headed vole, collared lemming and common vole were the most abundant small mammal species across the Eurasian Late Pleistocene steppe-tundra environment. Previous ancient DNA studies of the collared lemming and common vole have revealed dynamic population histories shaped by climatic fluctuations. To investigate the extent to which species with similar adaptations share common evolutionary histories, we generated a dataset comprised the mitochondrial genomes of 139 ancient and 6 modern narrow-headed voles from several sites across Europe and northwestern Asia covering approximately the last 100 thousand years (kyr). We inferred Bayesian time-aware phylogenies using 11 radiocarbon-dated samples to calibrate the molecular clock. Divergence of the main mtDNA lineages across the three species occurred during marine isotope stages (MIS) 7 and MIS 5, suggesting a common response of species adapted to open habitat during interglacials. We identified several time-structured mtDNA lineages in European narrow-headed vole, suggesting lineage turnover. The timing of some of these turnovers was synchronous across the three species, allowing us to identify the main drivers of the Late Pleistocene dynamics of steppe- and cold-adapted species. |
author2 |
Centre of New Technologies University of Warsaw (UW) Borissiak Paleontological Institute Russian Academy of Sciences Moscow (RAS) Ältere Urgeschichte und Quartärökologie University of Tübingen Senckenberg Centre for Human Evolution and Palaeoenvironment (HEP) Eberhard Karls Universität Tübingen = Eberhard Karls University of Tuebingen Department of Human Evolution Leipzig Max Planck Institute for Evolutionary Anthropology Leipzig Max-Planck-Gesellschaft-Max-Planck-Gesellschaft Institut für Paläontologie Universität Wien = University of Vienna Department of Zoology Univerzita Karlova Praha, Česká republika = Charles University Prague, Czech Republic (UK) Department of Archaeology, Anthropology and Geography, University of Winchester Institute of Archaeology Nicolaus Copernicus University Toruń Institute of Plant and Animal Ecology Ural Branch of Russian Academy of Sciences (UB RAS) Histoire naturelle de l'Homme préhistorique (HNHP) Muséum national d'Histoire naturelle (MNHN)-Université de Perpignan Via Domitia (UPVD)-Centre National de la Recherche Scientifique (CNRS) Institut Català de Paleoecologia Humana i Evolució Social (IPHES-CERCA) Área de prehistòria, Departament d'història i història de l'Art Universitat Rovira i Virgili Institute of Systematics and Evolution of Animals Polska Akademia Nauk = Polish Academy of Sciences = Académie polonaise des sciences (PAN) Senckenberg Research Station of Quaternary Palaeontology TraceoLab Université de Liège DRAC-SRA Nouvelle Aquitaine Wroclaw University of Environmental and Life Sciences Interdsciplinay Center for Archaeology and the Evolution of Human Behaviour (ICArEHB) Biogéosciences UMR 6282 (BGS) Université de Bourgogne (UB)-Centre National de la Recherche Scientifique (CNRS) Faculty of Archaeology Universiteit Leiden = Leiden University Bournemouth University Poole (BU) Department Chemistry G Ciamician Alma Mater Studiorum Università di Bologna = University of Bologna (UNIBO) This research was supported by the Polish National ScienceCentre grants nos: 2017/25/B/NZ8/02005 to A.N. and 2020/39/B/NZ8/02853 to M.B. Fieldwork at Roc-en-Pail (France) was grantedby the French Ministry of Culture (MCC) through the Pays-de-la-Loire Regional Archaeology Service (DRAC/SRA) and in 2016 bythe Mécène & Loire Foundation (http://www.mecene-et-loire.fr/).Fieldwork at Teufelslucken (Austria) was granted by the GeologicalSurvey of Lower Austria (grant no. BD1-G-5306/001-2019). MarieSoressi was supported by the NWO VICI award (VI.C.191.O70).Mar.K. was supported by Russian Science Foundation grant 22-14-00332. Loïc Lebreton has received funding from the EuropeanUnion’s Horizon 2020 research and innovation programme underthe Marie Skłodowska-Curie grant agreement No 101034349 andthe State Research Agency of the Spanish Ministry of Science andInnovation through the Program Maria de Maeztu Unit ofExcellence (grant no. CEX2019-000945-M). |
format |
Article in Journal/Newspaper |
author |
Baca, Mateusz Popović, Danijela Agadzhanyan, Alexander K. Baca, Katarzyna Conard, Nicholas J. Fewlass, Helen Filek, Thomas Golubiński, Michał Horáček, Ivan Knul, Monika V. Krajcarz, Magdalena Krokhaleva, Maria Lebreton, Loïc Lemanik, Anna Maul, Lutz C. Nagel, Doris Noiret, Pierre Primault, Jérome Rekovets, Leonid Rhodes, Sara E. Royer, Aurélien Serdyuk, Natalia V. Soressi, Marie Stewart, John R. Strukova, Tatiana Talamo, Sahra Wilczyński, Jarosław Nadachowski, Adam |
author_facet |
Baca, Mateusz Popović, Danijela Agadzhanyan, Alexander K. Baca, Katarzyna Conard, Nicholas J. Fewlass, Helen Filek, Thomas Golubiński, Michał Horáček, Ivan Knul, Monika V. Krajcarz, Magdalena Krokhaleva, Maria Lebreton, Loïc Lemanik, Anna Maul, Lutz C. Nagel, Doris Noiret, Pierre Primault, Jérome Rekovets, Leonid Rhodes, Sara E. Royer, Aurélien Serdyuk, Natalia V. Soressi, Marie Stewart, John R. Strukova, Tatiana Talamo, Sahra Wilczyński, Jarosław Nadachowski, Adam |
author_sort |
Baca, Mateusz |
title |
Ancient DNA of narrow-headed vole reveal common features of the Late Pleistocene population dynamics in cold-adapted small mammals. |
title_short |
Ancient DNA of narrow-headed vole reveal common features of the Late Pleistocene population dynamics in cold-adapted small mammals. |
title_full |
Ancient DNA of narrow-headed vole reveal common features of the Late Pleistocene population dynamics in cold-adapted small mammals. |
title_fullStr |
Ancient DNA of narrow-headed vole reveal common features of the Late Pleistocene population dynamics in cold-adapted small mammals. |
title_full_unstemmed |
Ancient DNA of narrow-headed vole reveal common features of the Late Pleistocene population dynamics in cold-adapted small mammals. |
title_sort |
ancient dna of narrow-headed vole reveal common features of the late pleistocene population dynamics in cold-adapted small mammals. |
publisher |
HAL CCSD |
publishDate |
2023 |
url |
https://u-bourgogne.hal.science/hal-04064818 https://doi.org/10.1098/rspb.2022.2238 |
genre |
Common vole Tundra |
genre_facet |
Common vole Tundra |
op_source |
ISSN: 0962-8452 EISSN: 1471-2954 Proceedings of the Royal Society B: Biological Sciences https://u-bourgogne.hal.science/hal-04064818 Proceedings of the Royal Society B: Biological Sciences, 2023, 290 (1993), pp.20222238. ⟨10.1098/rspb.2022.2238⟩ https://royalsocietypublishing.org/doi/10.1098/rspb.2022.2238 |
op_relation |
info:eu-repo/semantics/altIdentifier/doi/10.1098/rspb.2022.2238 info:eu-repo/semantics/altIdentifier/pmid/36787794 hal-04064818 https://u-bourgogne.hal.science/hal-04064818 doi:10.1098/rspb.2022.2238 PUBMED: 36787794 PUBMEDCENTRAL: PMC9928523 |
op_doi |
https://doi.org/10.1098/rspb.2022.2238 |
container_title |
Proceedings of the Royal Society B: Biological Sciences |
container_volume |
290 |
container_issue |
1993 |
_version_ |
1797581390683832320 |
spelling |
ftmuseumnhn:oai:HAL:hal-04064818v1 2024-04-28T08:16:13+00:00 Ancient DNA of narrow-headed vole reveal common features of the Late Pleistocene population dynamics in cold-adapted small mammals. Baca, Mateusz Popović, Danijela Agadzhanyan, Alexander K. Baca, Katarzyna Conard, Nicholas J. Fewlass, Helen Filek, Thomas Golubiński, Michał Horáček, Ivan Knul, Monika V. Krajcarz, Magdalena Krokhaleva, Maria Lebreton, Loïc Lemanik, Anna Maul, Lutz C. Nagel, Doris Noiret, Pierre Primault, Jérome Rekovets, Leonid Rhodes, Sara E. Royer, Aurélien Serdyuk, Natalia V. Soressi, Marie Stewart, John R. Strukova, Tatiana Talamo, Sahra Wilczyński, Jarosław Nadachowski, Adam Centre of New Technologies University of Warsaw (UW) Borissiak Paleontological Institute Russian Academy of Sciences Moscow (RAS) Ältere Urgeschichte und Quartärökologie University of Tübingen Senckenberg Centre for Human Evolution and Palaeoenvironment (HEP) Eberhard Karls Universität Tübingen = Eberhard Karls University of Tuebingen Department of Human Evolution Leipzig Max Planck Institute for Evolutionary Anthropology Leipzig Max-Planck-Gesellschaft-Max-Planck-Gesellschaft Institut für Paläontologie Universität Wien = University of Vienna Department of Zoology Univerzita Karlova Praha, Česká republika = Charles University Prague, Czech Republic (UK) Department of Archaeology, Anthropology and Geography, University of Winchester Institute of Archaeology Nicolaus Copernicus University Toruń Institute of Plant and Animal Ecology Ural Branch of Russian Academy of Sciences (UB RAS) Histoire naturelle de l'Homme préhistorique (HNHP) Muséum national d'Histoire naturelle (MNHN)-Université de Perpignan Via Domitia (UPVD)-Centre National de la Recherche Scientifique (CNRS) Institut Català de Paleoecologia Humana i Evolució Social (IPHES-CERCA) Área de prehistòria, Departament d'història i història de l'Art Universitat Rovira i Virgili Institute of Systematics and Evolution of Animals Polska Akademia Nauk = Polish Academy of Sciences = Académie polonaise des sciences (PAN) Senckenberg Research Station of Quaternary Palaeontology TraceoLab Université de Liège DRAC-SRA Nouvelle Aquitaine Wroclaw University of Environmental and Life Sciences Interdsciplinay Center for Archaeology and the Evolution of Human Behaviour (ICArEHB) Biogéosciences UMR 6282 (BGS) Université de Bourgogne (UB)-Centre National de la Recherche Scientifique (CNRS) Faculty of Archaeology Universiteit Leiden = Leiden University Bournemouth University Poole (BU) Department Chemistry G Ciamician Alma Mater Studiorum Università di Bologna = University of Bologna (UNIBO) This research was supported by the Polish National ScienceCentre grants nos: 2017/25/B/NZ8/02005 to A.N. and 2020/39/B/NZ8/02853 to M.B. Fieldwork at Roc-en-Pail (France) was grantedby the French Ministry of Culture (MCC) through the Pays-de-la-Loire Regional Archaeology Service (DRAC/SRA) and in 2016 bythe Mécène & Loire Foundation (http://www.mecene-et-loire.fr/).Fieldwork at Teufelslucken (Austria) was granted by the GeologicalSurvey of Lower Austria (grant no. BD1-G-5306/001-2019). MarieSoressi was supported by the NWO VICI award (VI.C.191.O70).Mar.K. was supported by Russian Science Foundation grant 22-14-00332. Loïc Lebreton has received funding from the EuropeanUnion’s Horizon 2020 research and innovation programme underthe Marie Skłodowska-Curie grant agreement No 101034349 andthe State Research Agency of the Spanish Ministry of Science andInnovation through the Program Maria de Maeztu Unit ofExcellence (grant no. CEX2019-000945-M). 2023-02-22 https://u-bourgogne.hal.science/hal-04064818 https://doi.org/10.1098/rspb.2022.2238 en eng HAL CCSD Royal Society, The info:eu-repo/semantics/altIdentifier/doi/10.1098/rspb.2022.2238 info:eu-repo/semantics/altIdentifier/pmid/36787794 hal-04064818 https://u-bourgogne.hal.science/hal-04064818 doi:10.1098/rspb.2022.2238 PUBMED: 36787794 PUBMEDCENTRAL: PMC9928523 ISSN: 0962-8452 EISSN: 1471-2954 Proceedings of the Royal Society B: Biological Sciences https://u-bourgogne.hal.science/hal-04064818 Proceedings of the Royal Society B: Biological Sciences, 2023, 290 (1993), pp.20222238. ⟨10.1098/rspb.2022.2238⟩ https://royalsocietypublishing.org/doi/10.1098/rspb.2022.2238 Pleistocene climate change habitat interstadials mitochondrial DNA paleoclimate MESH: Animals MESH: DNA Ancient MESH: Arvicolinae MESH: Bayes Theorem MESH: Phylogeny MESH: Population Dynamics Mitochondrial MESH: Genetic Variation [SDU.STU.PG]Sciences of the Universe [physics]/Earth Sciences/Paleontology info:eu-repo/semantics/article Journal articles 2023 ftmuseumnhn https://doi.org/10.1098/rspb.2022.2238 2024-04-04T17:25:35Z International audience The narrow-headed vole, collared lemming and common vole were the most abundant small mammal species across the Eurasian Late Pleistocene steppe-tundra environment. Previous ancient DNA studies of the collared lemming and common vole have revealed dynamic population histories shaped by climatic fluctuations. To investigate the extent to which species with similar adaptations share common evolutionary histories, we generated a dataset comprised the mitochondrial genomes of 139 ancient and 6 modern narrow-headed voles from several sites across Europe and northwestern Asia covering approximately the last 100 thousand years (kyr). We inferred Bayesian time-aware phylogenies using 11 radiocarbon-dated samples to calibrate the molecular clock. Divergence of the main mtDNA lineages across the three species occurred during marine isotope stages (MIS) 7 and MIS 5, suggesting a common response of species adapted to open habitat during interglacials. We identified several time-structured mtDNA lineages in European narrow-headed vole, suggesting lineage turnover. The timing of some of these turnovers was synchronous across the three species, allowing us to identify the main drivers of the Late Pleistocene dynamics of steppe- and cold-adapted species. Article in Journal/Newspaper Common vole Tundra Muséum National d'Histoire Naturelle (MNHM): HAL Proceedings of the Royal Society B: Biological Sciences 290 1993 |