Energy-based binary segmentation of snow microtomographic images

[Departement_IRSTEA]Eaux [TR1_IRSTEA]RIVAGE International audience X-ray microtomography has become an essential tool for investigating the mechanical and physical properties of snow, which are tied to its microstructure. To allowa quantitative characterization of the microstructure, the grayscale X...

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Published in:Journal of Glaciology
Main Authors: Hagenmuller, P., Chambon, Guillaume, Lesaffre, Benoît, Flin, F., Naaim, Mohamed
Other Authors: Erosion torrentielle neige et avalanches (UR ETGR (ETNA)), Institut national de recherche en sciences et technologies pour l'environnement et l'agriculture (IRSTEA), Météo-France Direction Interrégionale Sud-Est (DIRSE), Météo-France, VOR research network, European Feder Fund
Format: Article in Journal/Newspaper
Language:English
Published: HAL CCSD 2013
Subjects:
Online Access:https://hal.inrae.fr/hal-02598739
https://doi.org/10.3189/2013JoG13J035
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spelling ftmeteofrance:oai:HAL:hal-02598739v1 2024-04-14T08:14:08+00:00 Energy-based binary segmentation of snow microtomographic images Segmentation binaire d'images micro-tomographiques de neige par une approche énergétique Hagenmuller, P. Chambon, Guillaume Lesaffre, Benoît Flin, F. Naaim, Mohamed Erosion torrentielle neige et avalanches (UR ETGR (ETNA)) Institut national de recherche en sciences et technologies pour l'environnement et l'agriculture (IRSTEA) Météo-France Direction Interrégionale Sud-Est (DIRSE) Météo-France VOR research network European Feder Fund 2013 https://hal.inrae.fr/hal-02598739 https://doi.org/10.3189/2013JoG13J035 en eng HAL CCSD International Glaciological Society info:eu-repo/semantics/altIdentifier/doi/10.3189/2013JoG13J035 hal-02598739 https://hal.inrae.fr/hal-02598739 doi:10.3189/2013JoG13J035 IRSTEA: PUB00038894 WOS: 000325385200005 ISSN: 0022-1430 EISSN: 1727-5652 Journal of Glaciology https://hal.inrae.fr/hal-02598739 Journal of Glaciology, 2013, 59 (217), pp.859-873. ⟨10.3189/2013JoG13J035⟩ [SDE]Environmental Sciences info:eu-repo/semantics/article Journal articles 2013 ftmeteofrance https://doi.org/10.3189/2013JoG13J035 2024-03-21T16:24:08Z [Departement_IRSTEA]Eaux [TR1_IRSTEA]RIVAGE International audience X-ray microtomography has become an essential tool for investigating the mechanical and physical properties of snow, which are tied to its microstructure. To allowa quantitative characterization of the microstructure, the grayscale X-ray attenuation coefficient image has to be segmented into a binary ice/pore image. This step, called binary segmentation, is crucial and affects all subsequent analysis and modeling. Common segmentation methods are based on thresholding. In practice, these methods present some drawbacks and often require time-consuming manual post-processing. Here we present a binary segmentation algorithm based on the minimization of a segmentation energy. This energy is composed of a data fidelity term and a regularization term penalizing large interface area, which is of particular interest for snow where sintering naturally tends to reduce the surface energy. The accuracy of the method is demonstrated on a synthetic image. The method is then successfully applied on microtomographic images of snow and compared to the threshold-based segmentation. The main advantage of the presented approach is that it benefits from local spatial information. Moreover, the effective resolution of the segmented image is clearly defined and can be chosen a priori. Article in Journal/Newspaper Journal of Glaciology Météo-France: HAL Journal of Glaciology 59 217 859 873
institution Open Polar
collection Météo-France: HAL
op_collection_id ftmeteofrance
language English
topic [SDE]Environmental Sciences
spellingShingle [SDE]Environmental Sciences
Hagenmuller, P.
Chambon, Guillaume
Lesaffre, Benoît
Flin, F.
Naaim, Mohamed
Energy-based binary segmentation of snow microtomographic images
topic_facet [SDE]Environmental Sciences
description [Departement_IRSTEA]Eaux [TR1_IRSTEA]RIVAGE International audience X-ray microtomography has become an essential tool for investigating the mechanical and physical properties of snow, which are tied to its microstructure. To allowa quantitative characterization of the microstructure, the grayscale X-ray attenuation coefficient image has to be segmented into a binary ice/pore image. This step, called binary segmentation, is crucial and affects all subsequent analysis and modeling. Common segmentation methods are based on thresholding. In practice, these methods present some drawbacks and often require time-consuming manual post-processing. Here we present a binary segmentation algorithm based on the minimization of a segmentation energy. This energy is composed of a data fidelity term and a regularization term penalizing large interface area, which is of particular interest for snow where sintering naturally tends to reduce the surface energy. The accuracy of the method is demonstrated on a synthetic image. The method is then successfully applied on microtomographic images of snow and compared to the threshold-based segmentation. The main advantage of the presented approach is that it benefits from local spatial information. Moreover, the effective resolution of the segmented image is clearly defined and can be chosen a priori.
author2 Erosion torrentielle neige et avalanches (UR ETGR (ETNA))
Institut national de recherche en sciences et technologies pour l'environnement et l'agriculture (IRSTEA)
Météo-France Direction Interrégionale Sud-Est (DIRSE)
Météo-France
VOR research network
European Feder Fund
format Article in Journal/Newspaper
author Hagenmuller, P.
Chambon, Guillaume
Lesaffre, Benoît
Flin, F.
Naaim, Mohamed
author_facet Hagenmuller, P.
Chambon, Guillaume
Lesaffre, Benoît
Flin, F.
Naaim, Mohamed
author_sort Hagenmuller, P.
title Energy-based binary segmentation of snow microtomographic images
title_short Energy-based binary segmentation of snow microtomographic images
title_full Energy-based binary segmentation of snow microtomographic images
title_fullStr Energy-based binary segmentation of snow microtomographic images
title_full_unstemmed Energy-based binary segmentation of snow microtomographic images
title_sort energy-based binary segmentation of snow microtomographic images
publisher HAL CCSD
publishDate 2013
url https://hal.inrae.fr/hal-02598739
https://doi.org/10.3189/2013JoG13J035
genre Journal of Glaciology
genre_facet Journal of Glaciology
op_source ISSN: 0022-1430
EISSN: 1727-5652
Journal of Glaciology
https://hal.inrae.fr/hal-02598739
Journal of Glaciology, 2013, 59 (217), pp.859-873. ⟨10.3189/2013JoG13J035⟩
op_relation info:eu-repo/semantics/altIdentifier/doi/10.3189/2013JoG13J035
hal-02598739
https://hal.inrae.fr/hal-02598739
doi:10.3189/2013JoG13J035
IRSTEA: PUB00038894
WOS: 000325385200005
op_doi https://doi.org/10.3189/2013JoG13J035
container_title Journal of Glaciology
container_volume 59
container_issue 217
container_start_page 859
op_container_end_page 873
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