Seasonal Variability of Photosynthetic Microbial Eukaryotes (<3 µm) in the Kara Sea Revealed by 18S rDNA Metabarcoding of Sediment Trap Fluxes

This survey is the first to explore the seasonal cycle of microbial eukaryote diversity (<3 µm) using the NGS method and a 10-month sediment trap (2018–2019). The long-term trap was deployed from September to June in the northwestern part of the Kara Sea. A water sample collected before the sedim...

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Published in:Plants
Main Authors: Tatiana A. Belevich, Irina A. Milyutina, Aleksey V. Troitsky
Format: Text
Language:English
Published: Multidisciplinary Digital Publishing Institute 2021
Subjects:
NGS
Online Access:https://doi.org/10.3390/plants10112394
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spelling ftmdpi:oai:mdpi.com:/2223-7747/10/11/2394/ 2023-08-20T04:07:41+02:00 Seasonal Variability of Photosynthetic Microbial Eukaryotes (<3 µm) in the Kara Sea Revealed by 18S rDNA Metabarcoding of Sediment Trap Fluxes Tatiana A. Belevich Irina A. Milyutina Aleksey V. Troitsky agris 2021-11-06 application/pdf https://doi.org/10.3390/plants10112394 EN eng Multidisciplinary Digital Publishing Institute Plant Ecology https://dx.doi.org/10.3390/plants10112394 https://creativecommons.org/licenses/by/4.0/ Plants; Volume 10; Issue 11; Pages: 2394 microbial eukaryotes photosynthetic picoeukaryotes sediment trap seasonal succession NGS the Kara Sea Text 2021 ftmdpi https://doi.org/10.3390/plants10112394 2023-08-01T03:10:37Z This survey is the first to explore the seasonal cycle of microbial eukaryote diversity (<3 µm) using the NGS method and a 10-month sediment trap (2018–2019). The long-term trap was deployed from September to June in the northwestern part of the Kara Sea. A water sample collected before the sediment trap was deployed and also analyzed. The taxonomic composition of microbial eukaryotes in the water sample significantly differed from sediment trap samples, characterized by a high abundance of Ciliophora reads and low abundance of Fungi while trap samples contained an order of magnitude less Ciliophora sequences and high contribution of Fungi. Photosynthetic eukaryotes (PEs) accounting for about 34% of total protists reads were assigned to five major divisions: Chlorophyta, Cryptophyta, Dinoflagellata, Haptophyta, and Ochrophyta. The domination of phototrophic algae was revealed in late autumn. Mamiellophyceae and Trebouxiophyceae were the predominant PEs in mostly all of the studied seasons. Micromonas polaris was constantly present throughout the September–June period in the PE community. The obtained results determine the seasonal dynamics of picoplankton in order to improve our understanding of their role in polar ecosystems. Text Kara Sea MDPI Open Access Publishing Kara Sea Plants 10 11 2394
institution Open Polar
collection MDPI Open Access Publishing
op_collection_id ftmdpi
language English
topic microbial eukaryotes
photosynthetic picoeukaryotes
sediment trap
seasonal succession
NGS
the Kara Sea
spellingShingle microbial eukaryotes
photosynthetic picoeukaryotes
sediment trap
seasonal succession
NGS
the Kara Sea
Tatiana A. Belevich
Irina A. Milyutina
Aleksey V. Troitsky
Seasonal Variability of Photosynthetic Microbial Eukaryotes (<3 µm) in the Kara Sea Revealed by 18S rDNA Metabarcoding of Sediment Trap Fluxes
topic_facet microbial eukaryotes
photosynthetic picoeukaryotes
sediment trap
seasonal succession
NGS
the Kara Sea
description This survey is the first to explore the seasonal cycle of microbial eukaryote diversity (<3 µm) using the NGS method and a 10-month sediment trap (2018–2019). The long-term trap was deployed from September to June in the northwestern part of the Kara Sea. A water sample collected before the sediment trap was deployed and also analyzed. The taxonomic composition of microbial eukaryotes in the water sample significantly differed from sediment trap samples, characterized by a high abundance of Ciliophora reads and low abundance of Fungi while trap samples contained an order of magnitude less Ciliophora sequences and high contribution of Fungi. Photosynthetic eukaryotes (PEs) accounting for about 34% of total protists reads were assigned to five major divisions: Chlorophyta, Cryptophyta, Dinoflagellata, Haptophyta, and Ochrophyta. The domination of phototrophic algae was revealed in late autumn. Mamiellophyceae and Trebouxiophyceae were the predominant PEs in mostly all of the studied seasons. Micromonas polaris was constantly present throughout the September–June period in the PE community. The obtained results determine the seasonal dynamics of picoplankton in order to improve our understanding of their role in polar ecosystems.
format Text
author Tatiana A. Belevich
Irina A. Milyutina
Aleksey V. Troitsky
author_facet Tatiana A. Belevich
Irina A. Milyutina
Aleksey V. Troitsky
author_sort Tatiana A. Belevich
title Seasonal Variability of Photosynthetic Microbial Eukaryotes (<3 µm) in the Kara Sea Revealed by 18S rDNA Metabarcoding of Sediment Trap Fluxes
title_short Seasonal Variability of Photosynthetic Microbial Eukaryotes (<3 µm) in the Kara Sea Revealed by 18S rDNA Metabarcoding of Sediment Trap Fluxes
title_full Seasonal Variability of Photosynthetic Microbial Eukaryotes (<3 µm) in the Kara Sea Revealed by 18S rDNA Metabarcoding of Sediment Trap Fluxes
title_fullStr Seasonal Variability of Photosynthetic Microbial Eukaryotes (<3 µm) in the Kara Sea Revealed by 18S rDNA Metabarcoding of Sediment Trap Fluxes
title_full_unstemmed Seasonal Variability of Photosynthetic Microbial Eukaryotes (<3 µm) in the Kara Sea Revealed by 18S rDNA Metabarcoding of Sediment Trap Fluxes
title_sort seasonal variability of photosynthetic microbial eukaryotes (<3 µm) in the kara sea revealed by 18s rdna metabarcoding of sediment trap fluxes
publisher Multidisciplinary Digital Publishing Institute
publishDate 2021
url https://doi.org/10.3390/plants10112394
op_coverage agris
geographic Kara Sea
geographic_facet Kara Sea
genre Kara Sea
genre_facet Kara Sea
op_source Plants; Volume 10; Issue 11; Pages: 2394
op_relation Plant Ecology
https://dx.doi.org/10.3390/plants10112394
op_rights https://creativecommons.org/licenses/by/4.0/
op_doi https://doi.org/10.3390/plants10112394
container_title Plants
container_volume 10
container_issue 11
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