Genomic Characterization of the Genus Nairovirus (Family Bunyaviridae)
Nairovirus, one of five bunyaviral genera, includes seven species. Genomic sequence information is limited for members of the Dera Ghazi Khan, Hughes, Qalyub, Sakhalin, and Thiafora nairovirus species. We used next-generation sequencing and historical virus-culture samples to determine 14 complete a...
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ftmdpi:oai:mdpi.com:/1999-4915/8/6/164/ 2023-08-20T04:09:30+02:00 Genomic Characterization of the Genus Nairovirus (Family Bunyaviridae) Jens Kuhn Michael Wiley Sergio Rodriguez Yīmíng Bào Karla Prieto Amelia Travassos da Rosa Hilda Guzman Nazir Savji Jason Ladner Robert Tesh Jiro Wada Peter Jahrling Dennis Bente Gustavo Palacios agris 2016-06-10 application/pdf https://doi.org/10.3390/v8060164 EN eng Multidisciplinary Digital Publishing Institute Animal Viruses https://dx.doi.org/10.3390/v8060164 https://creativecommons.org/licenses/by/4.0/ Viruses; Volume 8; Issue 6; Pages: 164 Bunyaviridae bunyavirus nairovirus Dera Ghazi Khan virus Erve virus Ganjam virus Hughes virus Qalyub virus Sakhalin virus Tunis virus virus classification virus taxonomy Text 2016 ftmdpi https://doi.org/10.3390/v8060164 2023-07-31T20:54:06Z Nairovirus, one of five bunyaviral genera, includes seven species. Genomic sequence information is limited for members of the Dera Ghazi Khan, Hughes, Qalyub, Sakhalin, and Thiafora nairovirus species. We used next-generation sequencing and historical virus-culture samples to determine 14 complete and nine coding-complete nairoviral genome sequences to further characterize these species. Previously unsequenced viruses include Abu Mina, Clo Mor, Great Saltee, Hughes, Raza, Sakhalin, Soldado, and Tillamook viruses. In addition, we present genomic sequence information on additional isolates of previously sequenced Avalon, Dugbe, Sapphire II, and Zirqa viruses. Finally, we identify Tunis virus, previously thought to be a phlebovirus, as an isolate of Abu Hammad virus. Phylogenetic analyses indicate the need for reassignment of Sapphire II virus to Dera Ghazi Khan nairovirus and reassignment of Hazara, Tofla, and Nairobi sheep disease viruses to novel species. We also propose new species for the Kasokero group (Kasokero, Leopards Hill, Yogue viruses), the Ketarah group (Gossas, Issyk-kul, Keterah/soft tick viruses) and the Burana group (Wēnzhōu tick virus, Huángpí tick virus 1, Tǎchéng tick virus 1). Our analyses emphasize the sister relationship of nairoviruses and arenaviruses, and indicate that several nairo-like viruses (Shāyáng spider virus 1, Xīnzhōu spider virus, Sānxiá water strider virus 1, South Bay virus, Wǔhàn millipede virus 2) require establishment of novel genera in a larger nairovirus-arenavirus supergroup. Text Sakhalin MDPI Open Access Publishing South Bay ENVELOPE(-63.579,-63.579,-64.870,-64.870) Viruses 8 6 164 |
institution |
Open Polar |
collection |
MDPI Open Access Publishing |
op_collection_id |
ftmdpi |
language |
English |
topic |
Bunyaviridae bunyavirus nairovirus Dera Ghazi Khan virus Erve virus Ganjam virus Hughes virus Qalyub virus Sakhalin virus Tunis virus virus classification virus taxonomy |
spellingShingle |
Bunyaviridae bunyavirus nairovirus Dera Ghazi Khan virus Erve virus Ganjam virus Hughes virus Qalyub virus Sakhalin virus Tunis virus virus classification virus taxonomy Jens Kuhn Michael Wiley Sergio Rodriguez Yīmíng Bào Karla Prieto Amelia Travassos da Rosa Hilda Guzman Nazir Savji Jason Ladner Robert Tesh Jiro Wada Peter Jahrling Dennis Bente Gustavo Palacios Genomic Characterization of the Genus Nairovirus (Family Bunyaviridae) |
topic_facet |
Bunyaviridae bunyavirus nairovirus Dera Ghazi Khan virus Erve virus Ganjam virus Hughes virus Qalyub virus Sakhalin virus Tunis virus virus classification virus taxonomy |
description |
Nairovirus, one of five bunyaviral genera, includes seven species. Genomic sequence information is limited for members of the Dera Ghazi Khan, Hughes, Qalyub, Sakhalin, and Thiafora nairovirus species. We used next-generation sequencing and historical virus-culture samples to determine 14 complete and nine coding-complete nairoviral genome sequences to further characterize these species. Previously unsequenced viruses include Abu Mina, Clo Mor, Great Saltee, Hughes, Raza, Sakhalin, Soldado, and Tillamook viruses. In addition, we present genomic sequence information on additional isolates of previously sequenced Avalon, Dugbe, Sapphire II, and Zirqa viruses. Finally, we identify Tunis virus, previously thought to be a phlebovirus, as an isolate of Abu Hammad virus. Phylogenetic analyses indicate the need for reassignment of Sapphire II virus to Dera Ghazi Khan nairovirus and reassignment of Hazara, Tofla, and Nairobi sheep disease viruses to novel species. We also propose new species for the Kasokero group (Kasokero, Leopards Hill, Yogue viruses), the Ketarah group (Gossas, Issyk-kul, Keterah/soft tick viruses) and the Burana group (Wēnzhōu tick virus, Huángpí tick virus 1, Tǎchéng tick virus 1). Our analyses emphasize the sister relationship of nairoviruses and arenaviruses, and indicate that several nairo-like viruses (Shāyáng spider virus 1, Xīnzhōu spider virus, Sānxiá water strider virus 1, South Bay virus, Wǔhàn millipede virus 2) require establishment of novel genera in a larger nairovirus-arenavirus supergroup. |
format |
Text |
author |
Jens Kuhn Michael Wiley Sergio Rodriguez Yīmíng Bào Karla Prieto Amelia Travassos da Rosa Hilda Guzman Nazir Savji Jason Ladner Robert Tesh Jiro Wada Peter Jahrling Dennis Bente Gustavo Palacios |
author_facet |
Jens Kuhn Michael Wiley Sergio Rodriguez Yīmíng Bào Karla Prieto Amelia Travassos da Rosa Hilda Guzman Nazir Savji Jason Ladner Robert Tesh Jiro Wada Peter Jahrling Dennis Bente Gustavo Palacios |
author_sort |
Jens Kuhn |
title |
Genomic Characterization of the Genus Nairovirus (Family Bunyaviridae) |
title_short |
Genomic Characterization of the Genus Nairovirus (Family Bunyaviridae) |
title_full |
Genomic Characterization of the Genus Nairovirus (Family Bunyaviridae) |
title_fullStr |
Genomic Characterization of the Genus Nairovirus (Family Bunyaviridae) |
title_full_unstemmed |
Genomic Characterization of the Genus Nairovirus (Family Bunyaviridae) |
title_sort |
genomic characterization of the genus nairovirus (family bunyaviridae) |
publisher |
Multidisciplinary Digital Publishing Institute |
publishDate |
2016 |
url |
https://doi.org/10.3390/v8060164 |
op_coverage |
agris |
long_lat |
ENVELOPE(-63.579,-63.579,-64.870,-64.870) |
geographic |
South Bay |
geographic_facet |
South Bay |
genre |
Sakhalin |
genre_facet |
Sakhalin |
op_source |
Viruses; Volume 8; Issue 6; Pages: 164 |
op_relation |
Animal Viruses https://dx.doi.org/10.3390/v8060164 |
op_rights |
https://creativecommons.org/licenses/by/4.0/ |
op_doi |
https://doi.org/10.3390/v8060164 |
container_title |
Viruses |
container_volume |
8 |
container_issue |
6 |
container_start_page |
164 |
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1774722496634814464 |