Current knowledge about European eel Anguilla anguilla (L.) mtDNA D-loop region haplotypic variety
Today, there are only two information sources about Anguilla anguilla mtDNA D-loop region haplotypic variety and both are quite old. Our research group updated the ten year-old mtDNA D-loop region database of 80 sequences by adding the homological sequences of 45 European eels caught in Lithuanian t...
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ftlitinstagrecon:oai:elaba:5854459 2023-05-15T13:26:38+02:00 Current knowledge about European eel Anguilla anguilla (L.) mtDNA D-loop region haplotypic variety Upinio ungurio Anguilla anguilla (L.) mtDNR D-kilpos regiono haplotipų įvairovė Butkauskas, Dalius Ragauskas, Adomas Sruoga, Aniolas Ložys, Linas Tzeng, Wann-Nian 2009 http://lmavb.lvb.lt/LMAVB:ELABAPDB5854459&prefLang=en_US lit eng lit eng info:eu-repo/semantics/altIdentifier/doi/10.2478/v10043-009-0040-5 http://lmavb.lvb.lt/LMAVB:ELABAPDB5854459&prefLang=en_US Acta zoologica Lituanica, 2009, Vol. 19, nr. 4, p. 253-267 ISSN 1392-1657 Anguilla-anguilla European eel MtDNA D-loop Haplotype Panmixia IBD IBT info:eu-repo/semantics/article 2009 ftlitinstagrecon https://doi.org/10.2478/v10043-009-0040-5 2021-12-02T00:36:29Z Today, there are only two information sources about Anguilla anguilla mtDNA D-loop region haplotypic variety and both are quite old. Our research group updated the ten year-old mtDNA D-loop region database of 80 sequences by adding the homological sequences of 45 European eels caught in Lithuanian territorial waters, i.e., in the Baltic Sea, the Curonian Lagoon, and in inland Lakes Dringis and Siesartis. Even 37 unique haplotypes of European eel were found. Based on all available mtDNA D-loop sequence data, 115 polymorphic sites (S), 132 mutations (η), 0.9965 (± 0.002) overall haplotype diversity (H) and 0.02523 nucleotide diversity (π) were determinated. No significant clustering related to the sampling location was identified after the evaluation of the distribution patterns of different haplotypes in the phylogenetic tree constructed using 125 European eel mtDNA D-loop sequences. However, limited genetic differentiation based on geographic distribution of some haplogroups of A. anguilla became evident after the refinement of haplotype relationships using a network approach. The ambiguous clustering of specimens representing geographically related sampling locations in the phylogenetic tree derived using the neighbor-joining method and a non-random distribution of some haplotypes in the median joining network are discussed. Article in Journal/Newspaper Anguilla anguilla LAEI VL (Lithuanian Institute of Agrarian Economics Virtual Library) Acta Zoologica Lituanica 19 4 253 267 |
institution |
Open Polar |
collection |
LAEI VL (Lithuanian Institute of Agrarian Economics Virtual Library) |
op_collection_id |
ftlitinstagrecon |
language |
Lithuanian English |
topic |
Anguilla-anguilla European eel MtDNA D-loop Haplotype Panmixia IBD IBT |
spellingShingle |
Anguilla-anguilla European eel MtDNA D-loop Haplotype Panmixia IBD IBT Butkauskas, Dalius Ragauskas, Adomas Sruoga, Aniolas Ložys, Linas Tzeng, Wann-Nian Current knowledge about European eel Anguilla anguilla (L.) mtDNA D-loop region haplotypic variety |
topic_facet |
Anguilla-anguilla European eel MtDNA D-loop Haplotype Panmixia IBD IBT |
description |
Today, there are only two information sources about Anguilla anguilla mtDNA D-loop region haplotypic variety and both are quite old. Our research group updated the ten year-old mtDNA D-loop region database of 80 sequences by adding the homological sequences of 45 European eels caught in Lithuanian territorial waters, i.e., in the Baltic Sea, the Curonian Lagoon, and in inland Lakes Dringis and Siesartis. Even 37 unique haplotypes of European eel were found. Based on all available mtDNA D-loop sequence data, 115 polymorphic sites (S), 132 mutations (η), 0.9965 (± 0.002) overall haplotype diversity (H) and 0.02523 nucleotide diversity (π) were determinated. No significant clustering related to the sampling location was identified after the evaluation of the distribution patterns of different haplotypes in the phylogenetic tree constructed using 125 European eel mtDNA D-loop sequences. However, limited genetic differentiation based on geographic distribution of some haplogroups of A. anguilla became evident after the refinement of haplotype relationships using a network approach. The ambiguous clustering of specimens representing geographically related sampling locations in the phylogenetic tree derived using the neighbor-joining method and a non-random distribution of some haplotypes in the median joining network are discussed. |
format |
Article in Journal/Newspaper |
author |
Butkauskas, Dalius Ragauskas, Adomas Sruoga, Aniolas Ložys, Linas Tzeng, Wann-Nian |
author_facet |
Butkauskas, Dalius Ragauskas, Adomas Sruoga, Aniolas Ložys, Linas Tzeng, Wann-Nian |
author_sort |
Butkauskas, Dalius |
title |
Current knowledge about European eel Anguilla anguilla (L.) mtDNA D-loop region haplotypic variety |
title_short |
Current knowledge about European eel Anguilla anguilla (L.) mtDNA D-loop region haplotypic variety |
title_full |
Current knowledge about European eel Anguilla anguilla (L.) mtDNA D-loop region haplotypic variety |
title_fullStr |
Current knowledge about European eel Anguilla anguilla (L.) mtDNA D-loop region haplotypic variety |
title_full_unstemmed |
Current knowledge about European eel Anguilla anguilla (L.) mtDNA D-loop region haplotypic variety |
title_sort |
current knowledge about european eel anguilla anguilla (l.) mtdna d-loop region haplotypic variety |
publishDate |
2009 |
url |
http://lmavb.lvb.lt/LMAVB:ELABAPDB5854459&prefLang=en_US |
genre |
Anguilla anguilla |
genre_facet |
Anguilla anguilla |
op_source |
Acta zoologica Lituanica, 2009, Vol. 19, nr. 4, p. 253-267 ISSN 1392-1657 |
op_relation |
info:eu-repo/semantics/altIdentifier/doi/10.2478/v10043-009-0040-5 http://lmavb.lvb.lt/LMAVB:ELABAPDB5854459&prefLang=en_US |
op_doi |
https://doi.org/10.2478/v10043-009-0040-5 |
container_title |
Acta Zoologica Lituanica |
container_volume |
19 |
container_issue |
4 |
container_start_page |
253 |
op_container_end_page |
267 |
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1766393595541061632 |