A study based on whole-genome sequencing yields a rare variant at 8q24 associated with prostate cancer.

• Published in: Nature Genetics
• Main Authors: Gudmundsson, Julius, Sulem, Patrick, Gudbjartsson, Daniel F, Masson, Gisli, Agnarsson, Bjarni A, Benediktsdottir, Kristrun R, Sigurdsson, Asgeir, Magnusson, Olafur Th, Gudjonsson, Sigurjon A, Magnusdottir, Droplaug N, Johannsdottir, Hrefna, Helgadottir, Hafdis Th, Stacey, Simon N, Jonasdottir, Adalbjorg, Olafsdottir, Stefania B, Thorleifsson, Gudmar, Jonasson, Jon G, Tryggvadottir, Laufey, Navarrete, Sebastian, Fuertes, Fernando, Helfand, Brian T, Hu, Qiaoyan, Csiki, Irma E, Mates, Ioan N, Jinga, Viorel, Aben, Katja K H, van Oort, Inge M, Vermeulen, Sita H, Donovan, Jenny L, Hamdy, Freddy C, Ng, Chi-Fai, Chiu, Peter K F, Lau, Kin-Mang, Ng, Maggie C Y, Gulcher, Jeffrey R, Kong, Augustine, Catalona, William J, Mayordomo, Jose I, Einarsson, Gudmundur V, Barkardottir, Rosa B, Jonsson, Eirikur, Mates, Dana, Neal, David E, Kiemeney, Lambertus A, Thorsteinsdottir, Unnur, Rafnar, Thorunn, Stefansson, Kari
• Other Authors: deCODE genetics, Reykjavik, Iceland.
• Format: Article in Journal/Newspaper
• Language: English
• Published: 2013
• Subjects: Adenocarcinoma; Aged; 80 and over; Base Sequence; Cell Line; Chromosomes; Human; Pair 8; European Continental Ancestry Group; Gene Frequency; Genetic Predisposition to Disease; Genome; Genome-Wide Association Study; Homeodomain Proteins; Humans; Iceland; Male; Middle Aged; Molecular Sequence Data; Mutation; Polymorphism; Single Nucleotide; Prostatic Neoplasms; Risk; Sequence Analysis; DNA
• Online Access: http://hdl.handle.net/2336/299065; https://doi.org/10.1038/ng.2437

To access publisher full text version of this article. Please click on the hyperlink in Additional Links field. In Western countries, prostate cancer is the most prevalent cancer of men and one of the leading causes of cancer-related death in men. Several genome-wide association studies have yielded numerous common variants conferring risk of prostate cancer. Here, we analyzed 32.5 million variants discovered by whole-genome sequencing 1,795 Icelanders. We identified a new low-frequency variant at 8q24 associated with prostate cancer in European populations, rs188140481[A] (odds ratio (OR) = 2.90; P(combined) = 6.2 × 10(-34)), with an average risk allele frequency in controls of 0.54%. This variant is only very weakly correlated (r(2) ≤ 0.06) with previously reported risk variants at 8q24, and its association remains significant after adjustment for all known risk-associated variants. Carriers of rs188140481[A] were diagnosed with prostate cancer 1.26 years younger than non-carriers (P = 0.0059). We also report results for a previously described HOXB13 variant (rs138213197[T]), confirming it as a prostate cancer risk variant in populations from across Europe. European Union 202059 Urological Research Foundation U01 CA089600 P50 CA90386 P30 CA60553 Health Technology Assessment Programme 96/20/06 96/20/99 Department of Health, England Cancer Research UK C522/A8649 Medical Research Council of England G0500966_ID-75466 National Cancer Research Institute (NCRI), UK Southwest National Health Service Research and Development NCRI (ProMPT) study Cambridge and Oxford British Medical Research Council grants from the National Institute for Health Research