Shifts in the coral microbiome in response to in situ experimental deoxygenation
Global climate change impacts ocean communities through rising surface temperatures, ocean acidification, and deoxygenation. While the response of the coral holobiont to the first two effects has been relatively well studied, little is known about the response of the coral microbiome to deoxygenatio...
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ftkingabdullahun:oai:repository.kaust.edu.sa:10754/691087 2024-01-07T09:45:46+01:00 Shifts in the coral microbiome in response to in situ experimental deoxygenation Howard, Rachel D. Schul, Monica Rodriguez Bravo, Lucia M. Altieri, Andrew Meyer, Julie L. Red Sea Research Center (RSRC) Department of Soil, Water, and Ecosystem Sciences, University of Florida, Gainesville, FL, USA Smithsonian Tropical Research Institute, Balboa, Ancon, Republic of Panama Department of Environmental Engineering Sciences, University of Florida, Gainesville, FL, USA 2023-04-08 application/pdf http://hdl.handle.net/10754/691087 https://doi.org/10.1101/2023.04.06.535971 unknown Cold Spring Harbor Laboratory http://biorxiv.org/lookup/doi/10.1101/2023.04.06.535971 Howard, R. D., Schul, M., Rodriguez Bravo, L. M., Altieri, A., & Meyer, J. L. (2023). Shifts in the coral microbiome in response toin situexperimental deoxygenation. https://doi.org/10.1101/2023.04.06.535971 doi:10.1101/2023.04.06.535971 http://hdl.handle.net/10754/691087 This is a preprint version of a paper and has not been peer reviewed. Archived with thanks to Cold Spring Harbor Laboratory. Preprint 2023 ftkingabdullahun https://doi.org/10.1101/2023.04.06.535971 2023-12-09T20:19:24Z Global climate change impacts ocean communities through rising surface temperatures, ocean acidification, and deoxygenation. While the response of the coral holobiont to the first two effects has been relatively well studied, little is known about the response of the coral microbiome to deoxygenation. In this study, we investigated the response of the microbiome to hypoxia in two coral species that differ in their relative tolerance to hypoxia. We conducted in situ oxygen manipulations on a coral reef in Bahía Almirante, Panama, which has previously experienced episodes of low dissolved oxygen concentrations. Naïve coral colonies (previously unexposed to hypoxia) of massive starlet coral (Siderastrea siderea) and Lamarck’s sheet coral (Agaricia lamarcki) were transplanted to a reef and either enclosed in chambers that created hypoxic conditions or left at ambient oxygen levels. We collected samples of surface mucus and tissue after 48 hours of exposure and characterized the microbiome by sequencing 16S rRNA genes. We found that the microbiomes of the two coral species were distinct from one another and remained so after exhibiting similar shifts in microbiome composition in response to hypoxia. There was an increase in both abundance and number of taxa of anaerobic microbes after exposure to hypoxia. Some of these taxa may play beneficial roles in the coral holobiont by detoxifying the surrounding environment during hypoxic stress. This work describes the first characterization of the coral microbiome under hypoxia and is an initial step toward identifying potential beneficial bacteria for corals facing this environmental stressor. We thank the team at the Smithsonian Tropical Research Institute in Bocas del Toro, Panama for their assistance in field monitoring and work. This research was supported by University of Florida start-up funds to AHA and JLM, and NSF grant OCE-2048914 to AHA and JLM. Report Ocean acidification King Abdullah University of Science and Technology: KAUST Repository |
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King Abdullah University of Science and Technology: KAUST Repository |
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Global climate change impacts ocean communities through rising surface temperatures, ocean acidification, and deoxygenation. While the response of the coral holobiont to the first two effects has been relatively well studied, little is known about the response of the coral microbiome to deoxygenation. In this study, we investigated the response of the microbiome to hypoxia in two coral species that differ in their relative tolerance to hypoxia. We conducted in situ oxygen manipulations on a coral reef in Bahía Almirante, Panama, which has previously experienced episodes of low dissolved oxygen concentrations. Naïve coral colonies (previously unexposed to hypoxia) of massive starlet coral (Siderastrea siderea) and Lamarck’s sheet coral (Agaricia lamarcki) were transplanted to a reef and either enclosed in chambers that created hypoxic conditions or left at ambient oxygen levels. We collected samples of surface mucus and tissue after 48 hours of exposure and characterized the microbiome by sequencing 16S rRNA genes. We found that the microbiomes of the two coral species were distinct from one another and remained so after exhibiting similar shifts in microbiome composition in response to hypoxia. There was an increase in both abundance and number of taxa of anaerobic microbes after exposure to hypoxia. Some of these taxa may play beneficial roles in the coral holobiont by detoxifying the surrounding environment during hypoxic stress. This work describes the first characterization of the coral microbiome under hypoxia and is an initial step toward identifying potential beneficial bacteria for corals facing this environmental stressor. We thank the team at the Smithsonian Tropical Research Institute in Bocas del Toro, Panama for their assistance in field monitoring and work. This research was supported by University of Florida start-up funds to AHA and JLM, and NSF grant OCE-2048914 to AHA and JLM. |
author2 |
Red Sea Research Center (RSRC) Department of Soil, Water, and Ecosystem Sciences, University of Florida, Gainesville, FL, USA Smithsonian Tropical Research Institute, Balboa, Ancon, Republic of Panama Department of Environmental Engineering Sciences, University of Florida, Gainesville, FL, USA |
format |
Report |
author |
Howard, Rachel D. Schul, Monica Rodriguez Bravo, Lucia M. Altieri, Andrew Meyer, Julie L. |
spellingShingle |
Howard, Rachel D. Schul, Monica Rodriguez Bravo, Lucia M. Altieri, Andrew Meyer, Julie L. Shifts in the coral microbiome in response to in situ experimental deoxygenation |
author_facet |
Howard, Rachel D. Schul, Monica Rodriguez Bravo, Lucia M. Altieri, Andrew Meyer, Julie L. |
author_sort |
Howard, Rachel D. |
title |
Shifts in the coral microbiome in response to in situ experimental deoxygenation |
title_short |
Shifts in the coral microbiome in response to in situ experimental deoxygenation |
title_full |
Shifts in the coral microbiome in response to in situ experimental deoxygenation |
title_fullStr |
Shifts in the coral microbiome in response to in situ experimental deoxygenation |
title_full_unstemmed |
Shifts in the coral microbiome in response to in situ experimental deoxygenation |
title_sort |
shifts in the coral microbiome in response to in situ experimental deoxygenation |
publisher |
Cold Spring Harbor Laboratory |
publishDate |
2023 |
url |
http://hdl.handle.net/10754/691087 https://doi.org/10.1101/2023.04.06.535971 |
genre |
Ocean acidification |
genre_facet |
Ocean acidification |
op_relation |
http://biorxiv.org/lookup/doi/10.1101/2023.04.06.535971 Howard, R. D., Schul, M., Rodriguez Bravo, L. M., Altieri, A., & Meyer, J. L. (2023). Shifts in the coral microbiome in response toin situexperimental deoxygenation. https://doi.org/10.1101/2023.04.06.535971 doi:10.1101/2023.04.06.535971 http://hdl.handle.net/10754/691087 |
op_rights |
This is a preprint version of a paper and has not been peer reviewed. Archived with thanks to Cold Spring Harbor Laboratory. |
op_doi |
https://doi.org/10.1101/2023.04.06.535971 |
_version_ |
1787427377743134720 |