Comprehensive dataset of shotgun metagenomes from oxygen stratified freshwater lakes and ponds
Stratified lakes and ponds featuring steep oxygen gradients are significant net sources of greenhouse gases and hotspots in the carbon cycle. Despite their significant biogeochemical roles, the microbial communities, especially in the oxygen depleted compartments, are poorly known. Here, we present...
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ftjyvaeskylaenun:oai:jyx.jyu.fi:123456789/75875 2024-05-19T07:49:12+00:00 Comprehensive dataset of shotgun metagenomes from oxygen stratified freshwater lakes and ponds Buck, Moritz Garcia, Sarahi L. Fernandez, Leyden Martin, Gaëtan Martinez-Rodriguez, Gustavo A. Saarenheimo, Jatta Zopfi, Jakob Bertilsson, Stefan Peura, Sari 2021 application/pdf fulltext http://urn.fi/URN:NBN:fi:jyu-202105243135 eng eng Nature Publishing Group Scientific Data 2052-4463 8 10.1038/s41597-021-00910-1 Buck, M., Garcia, S. L., Fernandez, L., Martin, G., Martinez-Rodriguez, G. A., Saarenheimo, J., Zopfi, J., Bertilsson, S., & Peura, S. (2021). Comprehensive dataset of shotgun metagenomes from oxygen stratified freshwater lakes and ponds. Scientific Data , 8 , Article 131. https://doi.org/10.1038/s41597-021-00910-1 CONVID_86927626 URN:NBN:fi:jyu-202105243135 http://urn.fi/URN:NBN:fi:jyu-202105243135 CC BY 4.0 © The Author(s) 2021 openAccess https://creativecommons.org/licenses/by/4.0/ Freshwater ecology Metagenomics Microbial ecology Water microbiology mikrobiekologia data hiilen kierto lammet järvet genomiikka mikrobisto article http://purl.org/eprint/type/JournalArticle http://purl.org/coar/resource_type/c_2df8fbb1 publishedVersion A1 2021 ftjyvaeskylaenun 2024-04-23T23:38:28Z Stratified lakes and ponds featuring steep oxygen gradients are significant net sources of greenhouse gases and hotspots in the carbon cycle. Despite their significant biogeochemical roles, the microbial communities, especially in the oxygen depleted compartments, are poorly known. Here, we present a comprehensive dataset including 267 shotgun metagenomes from 41 stratified lakes and ponds mainly located in the boreal and subarctic regions, but also including one tropical reservoir and one temperate lake. For most lakes and ponds, the data includes a vertical sample set spanning from the oxic surface to the anoxic bottom layer. The majority of the samples were collected during the open water period, but also a total of 29 samples were collected from under the ice. In addition to the metagenomic sequences, the dataset includes environmental variables for the samples, such as oxygen, nutrient and organic carbon concentrations. The dataset is ideal for further exploring the microbial taxonomic and functional diversity in freshwater environments and potential climate change impacts on the functioning of these ecosystems. peerReviewed Article in Journal/Newspaper Subarctic JYX - Jyväskylä University Digital Archive |
institution |
Open Polar |
collection |
JYX - Jyväskylä University Digital Archive |
op_collection_id |
ftjyvaeskylaenun |
language |
English |
topic |
Freshwater ecology Metagenomics Microbial ecology Water microbiology mikrobiekologia data hiilen kierto lammet järvet genomiikka mikrobisto |
spellingShingle |
Freshwater ecology Metagenomics Microbial ecology Water microbiology mikrobiekologia data hiilen kierto lammet järvet genomiikka mikrobisto Buck, Moritz Garcia, Sarahi L. Fernandez, Leyden Martin, Gaëtan Martinez-Rodriguez, Gustavo A. Saarenheimo, Jatta Zopfi, Jakob Bertilsson, Stefan Peura, Sari Comprehensive dataset of shotgun metagenomes from oxygen stratified freshwater lakes and ponds |
topic_facet |
Freshwater ecology Metagenomics Microbial ecology Water microbiology mikrobiekologia data hiilen kierto lammet järvet genomiikka mikrobisto |
description |
Stratified lakes and ponds featuring steep oxygen gradients are significant net sources of greenhouse gases and hotspots in the carbon cycle. Despite their significant biogeochemical roles, the microbial communities, especially in the oxygen depleted compartments, are poorly known. Here, we present a comprehensive dataset including 267 shotgun metagenomes from 41 stratified lakes and ponds mainly located in the boreal and subarctic regions, but also including one tropical reservoir and one temperate lake. For most lakes and ponds, the data includes a vertical sample set spanning from the oxic surface to the anoxic bottom layer. The majority of the samples were collected during the open water period, but also a total of 29 samples were collected from under the ice. In addition to the metagenomic sequences, the dataset includes environmental variables for the samples, such as oxygen, nutrient and organic carbon concentrations. The dataset is ideal for further exploring the microbial taxonomic and functional diversity in freshwater environments and potential climate change impacts on the functioning of these ecosystems. peerReviewed |
format |
Article in Journal/Newspaper |
author |
Buck, Moritz Garcia, Sarahi L. Fernandez, Leyden Martin, Gaëtan Martinez-Rodriguez, Gustavo A. Saarenheimo, Jatta Zopfi, Jakob Bertilsson, Stefan Peura, Sari |
author_facet |
Buck, Moritz Garcia, Sarahi L. Fernandez, Leyden Martin, Gaëtan Martinez-Rodriguez, Gustavo A. Saarenheimo, Jatta Zopfi, Jakob Bertilsson, Stefan Peura, Sari |
author_sort |
Buck, Moritz |
title |
Comprehensive dataset of shotgun metagenomes from oxygen stratified freshwater lakes and ponds |
title_short |
Comprehensive dataset of shotgun metagenomes from oxygen stratified freshwater lakes and ponds |
title_full |
Comprehensive dataset of shotgun metagenomes from oxygen stratified freshwater lakes and ponds |
title_fullStr |
Comprehensive dataset of shotgun metagenomes from oxygen stratified freshwater lakes and ponds |
title_full_unstemmed |
Comprehensive dataset of shotgun metagenomes from oxygen stratified freshwater lakes and ponds |
title_sort |
comprehensive dataset of shotgun metagenomes from oxygen stratified freshwater lakes and ponds |
publisher |
Nature Publishing Group |
publishDate |
2021 |
url |
http://urn.fi/URN:NBN:fi:jyu-202105243135 |
genre |
Subarctic |
genre_facet |
Subarctic |
op_relation |
Scientific Data 2052-4463 8 10.1038/s41597-021-00910-1 Buck, M., Garcia, S. L., Fernandez, L., Martin, G., Martinez-Rodriguez, G. A., Saarenheimo, J., Zopfi, J., Bertilsson, S., & Peura, S. (2021). Comprehensive dataset of shotgun metagenomes from oxygen stratified freshwater lakes and ponds. Scientific Data , 8 , Article 131. https://doi.org/10.1038/s41597-021-00910-1 CONVID_86927626 URN:NBN:fi:jyu-202105243135 http://urn.fi/URN:NBN:fi:jyu-202105243135 |
op_rights |
CC BY 4.0 © The Author(s) 2021 openAccess https://creativecommons.org/licenses/by/4.0/ |
_version_ |
1799467666447007744 |