SalmonDB: a bioinformatics resource for Salmo salar and Oncorhynchus mykiss
SalmonDB is a new multiorganism database containing EST sequences from Salmo salar, Oncorhynchus mykiss and the whole genome sequence of Danio rerio, Gasterosteus aculeatus, Tetraodon nigroviridis, Oryzias latipes and Takifugu rubripes, built with core components from GMOD project, GOPArc system and...
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ftistanbuluniv:oai:http://acikerisim.istanbul.edu.tr:20.500.12627/84748 2023-05-15T18:09:46+02:00 SalmonDB: a bioinformatics resource for Salmo salar and Oncorhynchus mykiss DI GENOVA, Alex Aravena, Andres Octavıo MAASS, Alejandro ITURRA, Patricia ZAPATA, Luis GONZALEZ, Mauricio Centre National de la Recherche Scientifique (CNRS) , , 100643 2021-03-04T13:20:12Z https://hdl.handle.net/20.500.12627/84748 https://doi.org/10.1093/database/bar050 eng eng DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION DI GENOVA A., Aravena A. O. , ZAPATA L., GONZALEZ M., MAASS A., ITURRA P., "SalmonDB: a bioinformatics resource for Salmo salar and Oncorhynchus mykiss", DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION, 2011 1758-0463 vv_1032021 av_7bdbbcd0-d29b-446e-a8f7-f2c3d1e445ad http://hdl.handle.net/20.500.12627/84748 https://doi.org/10.1093/database/bar050 Yaşam Bilimleri Biyoinformatik Temel Bilimler Temel Tıp Bilimleri Biyokimya Sağlık Bilimleri Tıp Yaşam Bilimleri (LIFE) Biyoloji ve Biyokimya MATEMATİKSEL VE BİLGİSAYAR BİYOLOJİSİ Makale 2021 ftistanbuluniv https://doi.org/20.500.12627/84748 https://doi.org/10.1093/database/bar050 2022-08-10T13:34:32Z SalmonDB is a new multiorganism database containing EST sequences from Salmo salar, Oncorhynchus mykiss and the whole genome sequence of Danio rerio, Gasterosteus aculeatus, Tetraodon nigroviridis, Oryzias latipes and Takifugu rubripes, built with core components from GMOD project, GOPArc system and the BioMart project. The information provided by this resource includes Gene Ontology terms, metabolic pathways, SNP prediction, CDS prediction, orthologs prediction, several precalculated BLAST searches and domains. It also provides a BLAST server for matching user-provided sequences to any of the databases and an advanced query tool (BioMart) that allows easy browsing of EST databases with user-defined criteria. These tools make SalmonDB database a valuable resource for researchers searching for transcripts and genomic information regarding S. salar and other salmonid species. The database is expected to grow in the near feature, particularly with the S. salar genome sequencing project. Article in Journal/Newspaper Salmo salar İstanbul Üniversitesi Açık Erişim Sistemi Database 2011 0 bar050 bar050 |
institution |
Open Polar |
collection |
İstanbul Üniversitesi Açık Erişim Sistemi |
op_collection_id |
ftistanbuluniv |
language |
English |
topic |
Yaşam Bilimleri Biyoinformatik Temel Bilimler Temel Tıp Bilimleri Biyokimya Sağlık Bilimleri Tıp Yaşam Bilimleri (LIFE) Biyoloji ve Biyokimya MATEMATİKSEL VE BİLGİSAYAR BİYOLOJİSİ |
spellingShingle |
Yaşam Bilimleri Biyoinformatik Temel Bilimler Temel Tıp Bilimleri Biyokimya Sağlık Bilimleri Tıp Yaşam Bilimleri (LIFE) Biyoloji ve Biyokimya MATEMATİKSEL VE BİLGİSAYAR BİYOLOJİSİ DI GENOVA, Alex Aravena, Andres Octavıo MAASS, Alejandro ITURRA, Patricia ZAPATA, Luis GONZALEZ, Mauricio SalmonDB: a bioinformatics resource for Salmo salar and Oncorhynchus mykiss |
topic_facet |
Yaşam Bilimleri Biyoinformatik Temel Bilimler Temel Tıp Bilimleri Biyokimya Sağlık Bilimleri Tıp Yaşam Bilimleri (LIFE) Biyoloji ve Biyokimya MATEMATİKSEL VE BİLGİSAYAR BİYOLOJİSİ |
description |
SalmonDB is a new multiorganism database containing EST sequences from Salmo salar, Oncorhynchus mykiss and the whole genome sequence of Danio rerio, Gasterosteus aculeatus, Tetraodon nigroviridis, Oryzias latipes and Takifugu rubripes, built with core components from GMOD project, GOPArc system and the BioMart project. The information provided by this resource includes Gene Ontology terms, metabolic pathways, SNP prediction, CDS prediction, orthologs prediction, several precalculated BLAST searches and domains. It also provides a BLAST server for matching user-provided sequences to any of the databases and an advanced query tool (BioMart) that allows easy browsing of EST databases with user-defined criteria. These tools make SalmonDB database a valuable resource for researchers searching for transcripts and genomic information regarding S. salar and other salmonid species. The database is expected to grow in the near feature, particularly with the S. salar genome sequencing project. |
author2 |
Centre National de la Recherche Scientifique (CNRS) , , 100643 |
format |
Article in Journal/Newspaper |
author |
DI GENOVA, Alex Aravena, Andres Octavıo MAASS, Alejandro ITURRA, Patricia ZAPATA, Luis GONZALEZ, Mauricio |
author_facet |
DI GENOVA, Alex Aravena, Andres Octavıo MAASS, Alejandro ITURRA, Patricia ZAPATA, Luis GONZALEZ, Mauricio |
author_sort |
DI GENOVA, Alex |
title |
SalmonDB: a bioinformatics resource for Salmo salar and Oncorhynchus mykiss |
title_short |
SalmonDB: a bioinformatics resource for Salmo salar and Oncorhynchus mykiss |
title_full |
SalmonDB: a bioinformatics resource for Salmo salar and Oncorhynchus mykiss |
title_fullStr |
SalmonDB: a bioinformatics resource for Salmo salar and Oncorhynchus mykiss |
title_full_unstemmed |
SalmonDB: a bioinformatics resource for Salmo salar and Oncorhynchus mykiss |
title_sort |
salmondb: a bioinformatics resource for salmo salar and oncorhynchus mykiss |
publishDate |
2021 |
url |
https://hdl.handle.net/20.500.12627/84748 https://doi.org/10.1093/database/bar050 |
genre |
Salmo salar |
genre_facet |
Salmo salar |
op_relation |
DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION DI GENOVA A., Aravena A. O. , ZAPATA L., GONZALEZ M., MAASS A., ITURRA P., "SalmonDB: a bioinformatics resource for Salmo salar and Oncorhynchus mykiss", DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION, 2011 1758-0463 vv_1032021 av_7bdbbcd0-d29b-446e-a8f7-f2c3d1e445ad http://hdl.handle.net/20.500.12627/84748 https://doi.org/10.1093/database/bar050 |
op_doi |
https://doi.org/20.500.12627/84748 https://doi.org/10.1093/database/bar050 |
container_title |
Database |
container_volume |
2011 |
container_issue |
0 |
container_start_page |
bar050 |
op_container_end_page |
bar050 |
_version_ |
1766182420731658240 |