Multiple independent chromosomal fusions accompanied the radiation of the Antarctic teleost genus Trematomus (Notothenioidei:Nototheniidae)
International audience Background: Chromosomal rearrangements are thought to be an important driving force underlying lineage diversification, but their link to speciation continues to be debated. Antarctic teleost fish of the family Nototheniidae (Notothenioidei) diversified in a changing environme...
Published in: | BMC Evolutionary Biology |
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Main Authors: | , , , , , , , , |
Other Authors: | , , , , , , , , , , , , , |
Format: | Article in Journal/Newspaper |
Language: | English |
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HAL CCSD
2020
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Online Access: | https://hal.sorbonne-universite.fr/hal-02553667 https://hal.sorbonne-universite.fr/hal-02553667/document https://hal.sorbonne-universite.fr/hal-02553667/file/s12862-020-1600-3.pdf https://doi.org/10.1186/s12862-020-1600-3 |
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ftinstagro:oai:HAL:hal-02553667v1 |
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openpolar |
institution |
Open Polar |
collection |
Portail HAL Institut Agro |
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ftinstagro |
language |
English |
topic |
BAC-FISH Chromosomal painting Chromosomal rearrangements Chromosomal structural units Chromosomal synteny Nototheniidae Speciation [SDV.BID.EVO]Life Sciences [q-bio]/Biodiversity/Populations and Evolution [q-bio.PE] [SDV.GEN.GA]Life Sciences [q-bio]/Genetics/Animal genetics |
spellingShingle |
BAC-FISH Chromosomal painting Chromosomal rearrangements Chromosomal structural units Chromosomal synteny Nototheniidae Speciation [SDV.BID.EVO]Life Sciences [q-bio]/Biodiversity/Populations and Evolution [q-bio.PE] [SDV.GEN.GA]Life Sciences [q-bio]/Genetics/Animal genetics Auvinet, Juliette Graça, Paula Dettai, Agnès Amores, Angel Postlethwait, John H. Detrich, H. William Ozouf-Costaz, Catherine Coriton, Olivier Higuet, Dominique Multiple independent chromosomal fusions accompanied the radiation of the Antarctic teleost genus Trematomus (Notothenioidei:Nototheniidae) |
topic_facet |
BAC-FISH Chromosomal painting Chromosomal rearrangements Chromosomal structural units Chromosomal synteny Nototheniidae Speciation [SDV.BID.EVO]Life Sciences [q-bio]/Biodiversity/Populations and Evolution [q-bio.PE] [SDV.GEN.GA]Life Sciences [q-bio]/Genetics/Animal genetics |
description |
International audience Background: Chromosomal rearrangements are thought to be an important driving force underlying lineage diversification, but their link to speciation continues to be debated. Antarctic teleost fish of the family Nototheniidae (Notothenioidei) diversified in a changing environmental context, which led to ecological, morphological, and genetic differentiation among populations. In addition, extensive chromosomal repatterning accompanied species divergence in several clades. The most striking karyotypic changes involved the recent species radiation (about 10 My) of the genus Trematomus, with chromosomal pair numbers ranging between 29 and 12. These dramatic reductions in chromosome number resulted mostly from large-scale chromosome fusions. Multiple centric and/or tandem fusions have been hypothesized in at least seven of the twelve recognized Trematomus species. To reconstruct their evolutionary history, we employed comparative cytogenomics (BAC-FISH and chromosome painting) to reveal patterns of interspecific chromosomal orthologies across several notothenioid clades.Results: We defined orthologous chromosomal segments of reference, termed Structural Units (SUs). SUs were identified in a total of 18 notothenioid species. We demonstrated for the first time that SUs were strongly conserved across every specimen examined, with chromosomal syntenies highlighting a paucity of intrachromosomal macro-rearrangements. Multiple independent fusions of these SUs were inferred in the Trematomus species, in contrast to the shared SU fusions in species of the sister lineage Notothenia.Conclusions: The SU segments were defined units of chromosomal rearrangement in the entire family Nototheiidae, which diverged from the other notothenioid families 20 My ago. Some of the identified chromosomal syntenies within the SUs were even conserved in their closest relatives, the family Eleginopsidae. Comparing the timing of acquisition of the fusions in the closely related genera Notothenia and Trematomus of the ... |
author2 |
Evolution Paris-Seine (EPS) Institut de Recherche pour le Développement (IRD)-Université Nice Sophia Antipolis (1965 - 2019) (UNS)-Université Sorbonne Paris Cité (USPC)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Université des Antilles (UA) Institut de Systématique, Evolution, Biodiversité (ISYEB ) Muséum national d'Histoire naturelle (MNHN)-École Pratique des Hautes Études (EPHE) Université Paris Sciences et Lettres (PSL)-Université Paris Sciences et Lettres (PSL)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Université des Antilles (UA) Northeastern University's Marine Science Center Northeastern University Boston University of Oregon Eugene Institut de Génétique, Environnement et Protection des Plantes (IGEPP) Université de Rennes (UR)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-INSTITUT AGRO Agrocampus Ouest Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro) 5R01OD011116, National Institutes of Health PLR-1543383, National Science Foundation PLR-1444167, National Science Foundation of Sri Lanka |
format |
Article in Journal/Newspaper |
author |
Auvinet, Juliette Graça, Paula Dettai, Agnès Amores, Angel Postlethwait, John H. Detrich, H. William Ozouf-Costaz, Catherine Coriton, Olivier Higuet, Dominique |
author_facet |
Auvinet, Juliette Graça, Paula Dettai, Agnès Amores, Angel Postlethwait, John H. Detrich, H. William Ozouf-Costaz, Catherine Coriton, Olivier Higuet, Dominique |
author_sort |
Auvinet, Juliette |
title |
Multiple independent chromosomal fusions accompanied the radiation of the Antarctic teleost genus Trematomus (Notothenioidei:Nototheniidae) |
title_short |
Multiple independent chromosomal fusions accompanied the radiation of the Antarctic teleost genus Trematomus (Notothenioidei:Nototheniidae) |
title_full |
Multiple independent chromosomal fusions accompanied the radiation of the Antarctic teleost genus Trematomus (Notothenioidei:Nototheniidae) |
title_fullStr |
Multiple independent chromosomal fusions accompanied the radiation of the Antarctic teleost genus Trematomus (Notothenioidei:Nototheniidae) |
title_full_unstemmed |
Multiple independent chromosomal fusions accompanied the radiation of the Antarctic teleost genus Trematomus (Notothenioidei:Nototheniidae) |
title_sort |
multiple independent chromosomal fusions accompanied the radiation of the antarctic teleost genus trematomus (notothenioidei:nototheniidae) |
publisher |
HAL CCSD |
publishDate |
2020 |
url |
https://hal.sorbonne-universite.fr/hal-02553667 https://hal.sorbonne-universite.fr/hal-02553667/document https://hal.sorbonne-universite.fr/hal-02553667/file/s12862-020-1600-3.pdf https://doi.org/10.1186/s12862-020-1600-3 |
genre |
Antarc* Antarctic |
genre_facet |
Antarc* Antarctic |
op_source |
ISSN: 1471-2148 BMC Evolutionary Biology https://hal.sorbonne-universite.fr/hal-02553667 BMC Evolutionary Biology, 2020, 20 (1), pp.39. ⟨10.1186/s12862-020-1600-3⟩ |
op_relation |
info:eu-repo/semantics/altIdentifier/doi/10.1186/s12862-020-1600-3 info:eu-repo/semantics/altIdentifier/pmid/32192426 hal-02553667 https://hal.sorbonne-universite.fr/hal-02553667 https://hal.sorbonne-universite.fr/hal-02553667/document https://hal.sorbonne-universite.fr/hal-02553667/file/s12862-020-1600-3.pdf doi:10.1186/s12862-020-1600-3 PUBMED: 32192426 WOS: 000521487600001 |
op_rights |
info:eu-repo/semantics/OpenAccess |
op_doi |
https://doi.org/10.1186/s12862-020-1600-3 |
container_title |
BMC Evolutionary Biology |
container_volume |
20 |
container_issue |
1 |
_version_ |
1799476509246750720 |
spelling |
ftinstagro:oai:HAL:hal-02553667v1 2024-05-19T07:28:54+00:00 Multiple independent chromosomal fusions accompanied the radiation of the Antarctic teleost genus Trematomus (Notothenioidei:Nototheniidae) Auvinet, Juliette Graça, Paula Dettai, Agnès Amores, Angel Postlethwait, John H. Detrich, H. William Ozouf-Costaz, Catherine Coriton, Olivier Higuet, Dominique Evolution Paris-Seine (EPS) Institut de Recherche pour le Développement (IRD)-Université Nice Sophia Antipolis (1965 - 2019) (UNS)-Université Sorbonne Paris Cité (USPC)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Université des Antilles (UA) Institut de Systématique, Evolution, Biodiversité (ISYEB ) Muséum national d'Histoire naturelle (MNHN)-École Pratique des Hautes Études (EPHE) Université Paris Sciences et Lettres (PSL)-Université Paris Sciences et Lettres (PSL)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Université des Antilles (UA) Northeastern University's Marine Science Center Northeastern University Boston University of Oregon Eugene Institut de Génétique, Environnement et Protection des Plantes (IGEPP) Université de Rennes (UR)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)-INSTITUT AGRO Agrocampus Ouest Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro) 5R01OD011116, National Institutes of Health PLR-1543383, National Science Foundation PLR-1444167, National Science Foundation of Sri Lanka 2020-12 https://hal.sorbonne-universite.fr/hal-02553667 https://hal.sorbonne-universite.fr/hal-02553667/document https://hal.sorbonne-universite.fr/hal-02553667/file/s12862-020-1600-3.pdf https://doi.org/10.1186/s12862-020-1600-3 en eng HAL CCSD BioMed Central info:eu-repo/semantics/altIdentifier/doi/10.1186/s12862-020-1600-3 info:eu-repo/semantics/altIdentifier/pmid/32192426 hal-02553667 https://hal.sorbonne-universite.fr/hal-02553667 https://hal.sorbonne-universite.fr/hal-02553667/document https://hal.sorbonne-universite.fr/hal-02553667/file/s12862-020-1600-3.pdf doi:10.1186/s12862-020-1600-3 PUBMED: 32192426 WOS: 000521487600001 info:eu-repo/semantics/OpenAccess ISSN: 1471-2148 BMC Evolutionary Biology https://hal.sorbonne-universite.fr/hal-02553667 BMC Evolutionary Biology, 2020, 20 (1), pp.39. ⟨10.1186/s12862-020-1600-3⟩ BAC-FISH Chromosomal painting Chromosomal rearrangements Chromosomal structural units Chromosomal synteny Nototheniidae Speciation [SDV.BID.EVO]Life Sciences [q-bio]/Biodiversity/Populations and Evolution [q-bio.PE] [SDV.GEN.GA]Life Sciences [q-bio]/Genetics/Animal genetics info:eu-repo/semantics/article Journal articles 2020 ftinstagro https://doi.org/10.1186/s12862-020-1600-3 2024-04-25T17:19:42Z International audience Background: Chromosomal rearrangements are thought to be an important driving force underlying lineage diversification, but their link to speciation continues to be debated. Antarctic teleost fish of the family Nototheniidae (Notothenioidei) diversified in a changing environmental context, which led to ecological, morphological, and genetic differentiation among populations. In addition, extensive chromosomal repatterning accompanied species divergence in several clades. The most striking karyotypic changes involved the recent species radiation (about 10 My) of the genus Trematomus, with chromosomal pair numbers ranging between 29 and 12. These dramatic reductions in chromosome number resulted mostly from large-scale chromosome fusions. Multiple centric and/or tandem fusions have been hypothesized in at least seven of the twelve recognized Trematomus species. To reconstruct their evolutionary history, we employed comparative cytogenomics (BAC-FISH and chromosome painting) to reveal patterns of interspecific chromosomal orthologies across several notothenioid clades.Results: We defined orthologous chromosomal segments of reference, termed Structural Units (SUs). SUs were identified in a total of 18 notothenioid species. We demonstrated for the first time that SUs were strongly conserved across every specimen examined, with chromosomal syntenies highlighting a paucity of intrachromosomal macro-rearrangements. Multiple independent fusions of these SUs were inferred in the Trematomus species, in contrast to the shared SU fusions in species of the sister lineage Notothenia.Conclusions: The SU segments were defined units of chromosomal rearrangement in the entire family Nototheiidae, which diverged from the other notothenioid families 20 My ago. Some of the identified chromosomal syntenies within the SUs were even conserved in their closest relatives, the family Eleginopsidae. Comparing the timing of acquisition of the fusions in the closely related genera Notothenia and Trematomus of the ... Article in Journal/Newspaper Antarc* Antarctic Portail HAL Institut Agro BMC Evolutionary Biology 20 1 |