Model-informed classification of broadband acoustic backscatter from zooplankton in an in situ mesocosm

Classification of zooplankton to species with broadband echosounder data could increase the taxonomic resolution of acoustic surveys and reduce the dependence on net and trawl samples for ‘ground truthing’. Supervised classification with broadband echosounder data is limited by the acquisition of va...

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Published in:ICES Journal of Marine Science
Main Authors: Dunn, Muriel Barbara, McGowan-Yallop, Chelsey, Pedersen, Geir, Falk-Petersen, Stig, Daase, Malin Hildegard Elisabeth, Last, Kim, Langbehn, Tom, Fielding, Sophie, Brierley, Andrew S., Cottier, Finlo Robert, Basedow, Sünnje Linnéa, Camus, Lionel, Geoffroy, Maxime
Format: Article in Journal/Newspaper
Language:English
Published: 2023
Subjects:
Online Access:https://hdl.handle.net/11250/3106811
https://doi.org/10.1093/icesjms/fsad192
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spelling ftimr:oai:imr.brage.unit.no:11250/3106811 2024-01-07T09:41:28+01:00 Model-informed classification of broadband acoustic backscatter from zooplankton in an in situ mesocosm Dunn, Muriel Barbara McGowan-Yallop, Chelsey Pedersen, Geir Falk-Petersen, Stig Daase, Malin Hildegard Elisabeth Last, Kim Langbehn, Tom Fielding, Sophie Brierley, Andrew S. Cottier, Finlo Robert Basedow, Sünnje Linnéa Camus, Lionel Geoffroy, Maxime 2023 application/pdf https://hdl.handle.net/11250/3106811 https://doi.org/10.1093/icesjms/fsad192 eng eng Norges forskningsråd: 329305 Norges forskningsråd: 322332 Norges forskningsråd: 309512 Norges forskningsråd: 300333 ICES Journal of Marine Science. 2023, . urn:issn:1054-3139 https://hdl.handle.net/11250/3106811 https://doi.org/10.1093/icesjms/fsad192 cristin:2210390 14 ICES Journal of Marine Science Peer reviewed Journal article 2023 ftimr https://doi.org/10.1093/icesjms/fsad192 2023-12-13T23:47:43Z Classification of zooplankton to species with broadband echosounder data could increase the taxonomic resolution of acoustic surveys and reduce the dependence on net and trawl samples for ‘ground truthing’. Supervised classification with broadband echosounder data is limited by the acquisition of validated data required to train machine learning algorithms (‘classifiers’). We tested the hypothesis that acoustic scattering models could be used to train classifiers for remote classification of zooplankton. Three classifiers were trained with data from scattering models of four Arctic zooplankton groups (copepods, euphausiids, chaetognaths, and hydrozoans). We evaluated classifier predictions against observations of a mixed zooplankton community in a submerged purpose-built mesocosm (12 m3) insonified with broadband transmissions (185–255 kHz). The mesocosm was deployed from a wharf in Ny-Ålesund, Svalbard, during the Arctic polar night in January 2022. We detected 7722 tracked single targets, which were used to evaluate the classifier predictions of measured zooplankton targets. The classifiers could differentiate copepods from the other groups reasonably well, but they could not differentiate euphausiids, chaetognaths, and hydrozoans reliably due to the similarities in their modelled target spectra. We recommend that model-informed classification of zooplankton from broadband acoustic signals be used with caution until a better understanding of in situ target spectra variability is gained. publishedVersion Article in Journal/Newspaper Arctic Ny Ålesund Ny-Ålesund polar night Svalbard Zooplankton Copepods Institute for Marine Research: Brage IMR Arctic Ny-Ålesund Svalbard ICES Journal of Marine Science
institution Open Polar
collection Institute for Marine Research: Brage IMR
op_collection_id ftimr
language English
description Classification of zooplankton to species with broadband echosounder data could increase the taxonomic resolution of acoustic surveys and reduce the dependence on net and trawl samples for ‘ground truthing’. Supervised classification with broadband echosounder data is limited by the acquisition of validated data required to train machine learning algorithms (‘classifiers’). We tested the hypothesis that acoustic scattering models could be used to train classifiers for remote classification of zooplankton. Three classifiers were trained with data from scattering models of four Arctic zooplankton groups (copepods, euphausiids, chaetognaths, and hydrozoans). We evaluated classifier predictions against observations of a mixed zooplankton community in a submerged purpose-built mesocosm (12 m3) insonified with broadband transmissions (185–255 kHz). The mesocosm was deployed from a wharf in Ny-Ålesund, Svalbard, during the Arctic polar night in January 2022. We detected 7722 tracked single targets, which were used to evaluate the classifier predictions of measured zooplankton targets. The classifiers could differentiate copepods from the other groups reasonably well, but they could not differentiate euphausiids, chaetognaths, and hydrozoans reliably due to the similarities in their modelled target spectra. We recommend that model-informed classification of zooplankton from broadband acoustic signals be used with caution until a better understanding of in situ target spectra variability is gained. publishedVersion
format Article in Journal/Newspaper
author Dunn, Muriel Barbara
McGowan-Yallop, Chelsey
Pedersen, Geir
Falk-Petersen, Stig
Daase, Malin Hildegard Elisabeth
Last, Kim
Langbehn, Tom
Fielding, Sophie
Brierley, Andrew S.
Cottier, Finlo Robert
Basedow, Sünnje Linnéa
Camus, Lionel
Geoffroy, Maxime
spellingShingle Dunn, Muriel Barbara
McGowan-Yallop, Chelsey
Pedersen, Geir
Falk-Petersen, Stig
Daase, Malin Hildegard Elisabeth
Last, Kim
Langbehn, Tom
Fielding, Sophie
Brierley, Andrew S.
Cottier, Finlo Robert
Basedow, Sünnje Linnéa
Camus, Lionel
Geoffroy, Maxime
Model-informed classification of broadband acoustic backscatter from zooplankton in an in situ mesocosm
author_facet Dunn, Muriel Barbara
McGowan-Yallop, Chelsey
Pedersen, Geir
Falk-Petersen, Stig
Daase, Malin Hildegard Elisabeth
Last, Kim
Langbehn, Tom
Fielding, Sophie
Brierley, Andrew S.
Cottier, Finlo Robert
Basedow, Sünnje Linnéa
Camus, Lionel
Geoffroy, Maxime
author_sort Dunn, Muriel Barbara
title Model-informed classification of broadband acoustic backscatter from zooplankton in an in situ mesocosm
title_short Model-informed classification of broadband acoustic backscatter from zooplankton in an in situ mesocosm
title_full Model-informed classification of broadband acoustic backscatter from zooplankton in an in situ mesocosm
title_fullStr Model-informed classification of broadband acoustic backscatter from zooplankton in an in situ mesocosm
title_full_unstemmed Model-informed classification of broadband acoustic backscatter from zooplankton in an in situ mesocosm
title_sort model-informed classification of broadband acoustic backscatter from zooplankton in an in situ mesocosm
publishDate 2023
url https://hdl.handle.net/11250/3106811
https://doi.org/10.1093/icesjms/fsad192
geographic Arctic
Ny-Ålesund
Svalbard
geographic_facet Arctic
Ny-Ålesund
Svalbard
genre Arctic
Ny Ålesund
Ny-Ålesund
polar night
Svalbard
Zooplankton
Copepods
genre_facet Arctic
Ny Ålesund
Ny-Ålesund
polar night
Svalbard
Zooplankton
Copepods
op_source 14
ICES Journal of Marine Science
op_relation Norges forskningsråd: 329305
Norges forskningsråd: 322332
Norges forskningsråd: 309512
Norges forskningsråd: 300333
ICES Journal of Marine Science. 2023, .
urn:issn:1054-3139
https://hdl.handle.net/11250/3106811
https://doi.org/10.1093/icesjms/fsad192
cristin:2210390
op_doi https://doi.org/10.1093/icesjms/fsad192
container_title ICES Journal of Marine Science
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