POLLen in the iCE: insights into the Adamello glacier (Italy) by pollen DNA and morphology

Glaciers were long studied as records of climatic variables, but information on the biological component is an emerging topic. Pollen, produced in large quantities by anemophilous plant species, can travel long distances and reach extreme habitats like glaciers. Thus, glaciers have the potential to...

Full description

Bibliographic Details
Main Authors: Cristofori, A., Festi, D., Bertoni, E., Camin, F., Pindo, M., Vernesi, C., Girardi, M., Casarotto, C., Varotto, C., Maggi, V.
Format: Conference Object
Language:English
Published: country:IT 2018
Subjects:
Online Access:http://hdl.handle.net/10449/46012
_version_ 1821540593292017664
author Cristofori, A.
Festi, D.
Bertoni, E.
Camin, F.
Pindo, M.
Vernesi, C.
Girardi, M.
Casarotto, C.
Varotto, C.
Maggi, V.
author2 Cristofori, A.
Festi, D.
Bertoni, E.
Camin, F.
Pindo, M.
Vernesi, C.
Girardi, M.
Casarotto, C.
Varotto, C.
Maggi, V.
author_facet Cristofori, A.
Festi, D.
Bertoni, E.
Camin, F.
Pindo, M.
Vernesi, C.
Girardi, M.
Casarotto, C.
Varotto, C.
Maggi, V.
author_sort Cristofori, A.
collection Fondazione Edmund Mach: IRIS-OpenPub
description Glaciers were long studied as records of climatic variables, but information on the biological component is an emerging topic. Pollen, produced in large quantities by anemophilous plant species, can travel long distances and reach extreme habitats like glaciers. Thus, glaciers have the potential to log plant biodiversity through the pollen proxy. In order to verify the feasibility of the very first pollen DNA metabarcoding study on an alpine glacier, the deepest and widest Italian glacier was chosen, potentially archiving information dating back to the Little Ice Age. A 5.7 m ice core was retrieved from the Adamello glacier in March 2015. Ice core samples were cut in longitudinal sections and the following indicators were analyzed: thin sections, hydrogen and oxygen stable isotope ratios and pollen. Stable isotope ratios were measured using Isotope Ratio Mass Spectrometry. The pollen content of ice was analyzed by pollen DNA metabarcoding and classical light microscopy. Samples for DNA metabarcoding were concentrated, DNA was extracted, amplified with the trnL cpDNA barcode (c-h region, 140bp) and sequenced by a high throughput platform. Stable isotope ratios reveal a distinct pattern in the first two superficial meters of the ice core with a winter and summer season. Ice crystal structure transformation along the ice core was compared to stable isotope content, mass balance and pollen seasonality. The age of the ice core was estimated in 5 years. Pollen analysis recorded the presence of 34-55 pollen taxa, with an identification mostly at the species-level (60%) for DNA metabarcoding and a higher number of detected taxa for light microscopy analysis. The very first results on pollen DNA metabarcoding showed that environmental DNA archived in the glacier ice can be extracted, amplified and sequenced, indicating a good preservation of genetic material, even in a temperate glacier like Adamello. Pollen deposition in the ice of the glacier conserve a seasonal time-scale. Moreover, DNA-metabarcoding analyses allow an ...
format Conference Object
genre ice core
genre_facet ice core
id ftiasma:oai:openpub.fmach.it:10449/46012
institution Open Polar
language English
op_collection_id ftiasma
op_relation ispartofbook:ICA 2018: 11th International Congress on Aerobiology: advances in aerobiology for the preservation of human and environmental health: a multidisciplinary approach, Parma, Italy, 3-7 September 2018
ICA 2018: 11th International Congress on Aerobiology: advances in aerobiology for the preservation of human and environmental health: a multidisciplinary approach
firstpage:90
http://hdl.handle.net/10449/46012
op_rights info:eu-repo/semantics/restrictedAccess
publishDate 2018
publisher country:IT
record_format openpolar
spelling ftiasma:oai:openpub.fmach.it:10449/46012 2025-01-16T22:23:44+00:00 POLLen in the iCE: insights into the Adamello glacier (Italy) by pollen DNA and morphology Cristofori, A. Festi, D. Bertoni, E. Camin, F. Pindo, M. Vernesi, C. Girardi, M. Casarotto, C. Varotto, C. Maggi, V. Cristofori, A. Festi, D. Bertoni, E. Camin, F. Pindo, M. Vernesi, C. Girardi, M. Casarotto, C. Varotto, C. Maggi, V. 2018 http://hdl.handle.net/10449/46012 eng eng country:IT place:Parma ispartofbook:ICA 2018: 11th International Congress on Aerobiology: advances in aerobiology for the preservation of human and environmental health: a multidisciplinary approach, Parma, Italy, 3-7 September 2018 ICA 2018: 11th International Congress on Aerobiology: advances in aerobiology for the preservation of human and environmental health: a multidisciplinary approach firstpage:90 http://hdl.handle.net/10449/46012 info:eu-repo/semantics/restrictedAccess eDNA Metabarcoding Glaciology Settore BIO/03 - BOTANICA AMBIENTALE E APPLICATA info:eu-repo/semantics/conferenceObject 2018 ftiasma 2024-01-02T23:24:42Z Glaciers were long studied as records of climatic variables, but information on the biological component is an emerging topic. Pollen, produced in large quantities by anemophilous plant species, can travel long distances and reach extreme habitats like glaciers. Thus, glaciers have the potential to log plant biodiversity through the pollen proxy. In order to verify the feasibility of the very first pollen DNA metabarcoding study on an alpine glacier, the deepest and widest Italian glacier was chosen, potentially archiving information dating back to the Little Ice Age. A 5.7 m ice core was retrieved from the Adamello glacier in March 2015. Ice core samples were cut in longitudinal sections and the following indicators were analyzed: thin sections, hydrogen and oxygen stable isotope ratios and pollen. Stable isotope ratios were measured using Isotope Ratio Mass Spectrometry. The pollen content of ice was analyzed by pollen DNA metabarcoding and classical light microscopy. Samples for DNA metabarcoding were concentrated, DNA was extracted, amplified with the trnL cpDNA barcode (c-h region, 140bp) and sequenced by a high throughput platform. Stable isotope ratios reveal a distinct pattern in the first two superficial meters of the ice core with a winter and summer season. Ice crystal structure transformation along the ice core was compared to stable isotope content, mass balance and pollen seasonality. The age of the ice core was estimated in 5 years. Pollen analysis recorded the presence of 34-55 pollen taxa, with an identification mostly at the species-level (60%) for DNA metabarcoding and a higher number of detected taxa for light microscopy analysis. The very first results on pollen DNA metabarcoding showed that environmental DNA archived in the glacier ice can be extracted, amplified and sequenced, indicating a good preservation of genetic material, even in a temperate glacier like Adamello. Pollen deposition in the ice of the glacier conserve a seasonal time-scale. Moreover, DNA-metabarcoding analyses allow an ... Conference Object ice core Fondazione Edmund Mach: IRIS-OpenPub
spellingShingle eDNA
Metabarcoding
Glaciology
Settore BIO/03 - BOTANICA AMBIENTALE E APPLICATA
Cristofori, A.
Festi, D.
Bertoni, E.
Camin, F.
Pindo, M.
Vernesi, C.
Girardi, M.
Casarotto, C.
Varotto, C.
Maggi, V.
POLLen in the iCE: insights into the Adamello glacier (Italy) by pollen DNA and morphology
title POLLen in the iCE: insights into the Adamello glacier (Italy) by pollen DNA and morphology
title_full POLLen in the iCE: insights into the Adamello glacier (Italy) by pollen DNA and morphology
title_fullStr POLLen in the iCE: insights into the Adamello glacier (Italy) by pollen DNA and morphology
title_full_unstemmed POLLen in the iCE: insights into the Adamello glacier (Italy) by pollen DNA and morphology
title_short POLLen in the iCE: insights into the Adamello glacier (Italy) by pollen DNA and morphology
title_sort pollen in the ice: insights into the adamello glacier (italy) by pollen dna and morphology
topic eDNA
Metabarcoding
Glaciology
Settore BIO/03 - BOTANICA AMBIENTALE E APPLICATA
topic_facet eDNA
Metabarcoding
Glaciology
Settore BIO/03 - BOTANICA AMBIENTALE E APPLICATA
url http://hdl.handle.net/10449/46012