Streptomyces bathyalis sp. nov., an actinobacterium isolated from the sponge in a deep sea.
A novel actinobacterium, designated ASO4wetT, was isolated from the unidentified sponge (SO4) in the deep sea collected of the North Atlantic Ocean. Study of 16S rRNA gene sequences indicated that strain ASO4wetT is a member of the genus Streptomyces and showed the closest similarities to Streptomyc...
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Online Access: | http://hdl.handle.net/10033/622805 https://doi.org/10.1007/s10482-021-01528-4 |
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fthzi:oai:repository.helmholtz-hzi.de:10033/622805 2023-05-15T17:29:55+02:00 Streptomyces bathyalis sp. nov., an actinobacterium isolated from the sponge in a deep sea. Risdian, Chandra Landwehr, Wiebke Rohde, Manfred Schumann, Peter Hahnke, Richard L Spröer, Cathrin Bunk, Boyke Kämpfer, Peter Schupp, Peter J Wink, Joachim HZI,Helmholtz-Zentrum für Infektionsforschung GmbH, Inhoffenstr. 7,38124 Braunschweig, Germany. 2021-02-17 http://hdl.handle.net/10033/622805 https://doi.org/10.1007/s10482-021-01528-4 en eng Springer Antonie Van Leeuwenhoek. 2021 Apr;114(4):425-435. doi:10.1007/s10482-021-01528-4. Epub 2021 Feb 17. 33595745 doi:10.1007/s10482-021-01528-4 http://hdl.handle.net/10033/622805 1572-9699 Antonie van Leeuwenhoek Attribution 4.0 International http://creativecommons.org/licenses/by/4.0/ CC-BY 114 4 425 435 Antonie van Leeuwenhoek Netherlands Deep‐sea sponge Polyphasic taxonomy Streptomyces The North Atlantic Ocean Article 2021 fthzi https://doi.org/10.1007/s10482-021-01528-4 2022-03-09T17:40:36Z A novel actinobacterium, designated ASO4wetT, was isolated from the unidentified sponge (SO4) in the deep sea collected of the North Atlantic Ocean. Study of 16S rRNA gene sequences indicated that strain ASO4wetT is a member of the genus Streptomyces and showed the closest similarities to Streptomyces karpasiensis K413T (98.87 %), Streptomyces glycovorans YIM M 10366T (98.38 %), and Streptomyces abyssalis YIM M 10400T (97.53 %). Strain ASO4wetT contained MK-9(H8) as the predominant menaquinone and the major fatty acids are iso-C16:0, anteiso-C15:0, and iso-C15:0. Polyphasic taxonomy was carried out between strain ASO4wetT and its phylogenetically closely related Streptomyces strains, which further elucidated their relatedness and revealed that strain ASO4wetT could be distinguished from currently known Streptomyces species. Strain ASO4wetT clearly represents a novel species in genus Streptomyces. We propose the name Streptomyces bathyalis sp. nov., with the type strain ASO4wetT (= DSM 106605T = NCCB 100657T). Analysis of the whole-genome sequence of S. bathyalis revealed that genome size is 7,377,472 bp with 6332 coding sequences. Article in Journal/Newspaper North Atlantic Helmholtz Centre of Infection Research (HZI), Braunschweig: Repository Antonie van Leeuwenhoek 114 4 425 435 |
institution |
Open Polar |
collection |
Helmholtz Centre of Infection Research (HZI), Braunschweig: Repository |
op_collection_id |
fthzi |
language |
English |
topic |
Deep‐sea sponge Polyphasic taxonomy Streptomyces The North Atlantic Ocean |
spellingShingle |
Deep‐sea sponge Polyphasic taxonomy Streptomyces The North Atlantic Ocean Risdian, Chandra Landwehr, Wiebke Rohde, Manfred Schumann, Peter Hahnke, Richard L Spröer, Cathrin Bunk, Boyke Kämpfer, Peter Schupp, Peter J Wink, Joachim Streptomyces bathyalis sp. nov., an actinobacterium isolated from the sponge in a deep sea. |
topic_facet |
Deep‐sea sponge Polyphasic taxonomy Streptomyces The North Atlantic Ocean |
description |
A novel actinobacterium, designated ASO4wetT, was isolated from the unidentified sponge (SO4) in the deep sea collected of the North Atlantic Ocean. Study of 16S rRNA gene sequences indicated that strain ASO4wetT is a member of the genus Streptomyces and showed the closest similarities to Streptomyces karpasiensis K413T (98.87 %), Streptomyces glycovorans YIM M 10366T (98.38 %), and Streptomyces abyssalis YIM M 10400T (97.53 %). Strain ASO4wetT contained MK-9(H8) as the predominant menaquinone and the major fatty acids are iso-C16:0, anteiso-C15:0, and iso-C15:0. Polyphasic taxonomy was carried out between strain ASO4wetT and its phylogenetically closely related Streptomyces strains, which further elucidated their relatedness and revealed that strain ASO4wetT could be distinguished from currently known Streptomyces species. Strain ASO4wetT clearly represents a novel species in genus Streptomyces. We propose the name Streptomyces bathyalis sp. nov., with the type strain ASO4wetT (= DSM 106605T = NCCB 100657T). Analysis of the whole-genome sequence of S. bathyalis revealed that genome size is 7,377,472 bp with 6332 coding sequences. |
author2 |
HZI,Helmholtz-Zentrum für Infektionsforschung GmbH, Inhoffenstr. 7,38124 Braunschweig, Germany. |
format |
Article in Journal/Newspaper |
author |
Risdian, Chandra Landwehr, Wiebke Rohde, Manfred Schumann, Peter Hahnke, Richard L Spröer, Cathrin Bunk, Boyke Kämpfer, Peter Schupp, Peter J Wink, Joachim |
author_facet |
Risdian, Chandra Landwehr, Wiebke Rohde, Manfred Schumann, Peter Hahnke, Richard L Spröer, Cathrin Bunk, Boyke Kämpfer, Peter Schupp, Peter J Wink, Joachim |
author_sort |
Risdian, Chandra |
title |
Streptomyces bathyalis sp. nov., an actinobacterium isolated from the sponge in a deep sea. |
title_short |
Streptomyces bathyalis sp. nov., an actinobacterium isolated from the sponge in a deep sea. |
title_full |
Streptomyces bathyalis sp. nov., an actinobacterium isolated from the sponge in a deep sea. |
title_fullStr |
Streptomyces bathyalis sp. nov., an actinobacterium isolated from the sponge in a deep sea. |
title_full_unstemmed |
Streptomyces bathyalis sp. nov., an actinobacterium isolated from the sponge in a deep sea. |
title_sort |
streptomyces bathyalis sp. nov., an actinobacterium isolated from the sponge in a deep sea. |
publisher |
Springer |
publishDate |
2021 |
url |
http://hdl.handle.net/10033/622805 https://doi.org/10.1007/s10482-021-01528-4 |
genre |
North Atlantic |
genre_facet |
North Atlantic |
op_source |
114 4 425 435 Antonie van Leeuwenhoek Netherlands |
op_relation |
Antonie Van Leeuwenhoek. 2021 Apr;114(4):425-435. doi:10.1007/s10482-021-01528-4. Epub 2021 Feb 17. 33595745 doi:10.1007/s10482-021-01528-4 http://hdl.handle.net/10033/622805 1572-9699 Antonie van Leeuwenhoek |
op_rights |
Attribution 4.0 International http://creativecommons.org/licenses/by/4.0/ |
op_rightsnorm |
CC-BY |
op_doi |
https://doi.org/10.1007/s10482-021-01528-4 |
container_title |
Antonie van Leeuwenhoek |
container_volume |
114 |
container_issue |
4 |
container_start_page |
425 |
op_container_end_page |
435 |
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1766125160402780160 |