The 1.4 A crystal structure of the large and cold active Vibrio sp. alkaline phosphatase
Alkaline phosphatase AP from the cold adapted Vibrio strain G15 21 is among the AP variants with the highest known kcat value. Here the structure of the enzyme at 1.4 resolution is reported and compared to APs from E. coli, human placenta, shrimp and the Antarctic bacterium strain TAB5. The Vibrio A...
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fthmiberlin:oai:helmholtz.HZB:107088 2023-05-15T14:09:59+02:00 The 1.4 A crystal structure of the large and cold active Vibrio sp. alkaline phosphatase Helland, R. Larsen, R.L. Asgeirsson, B. 2009-01-01 http://www.helmholtz-berlin.de/pubbin/oai_publication?VT=1&ID=107088 und unknown http://www.helmholtz-berlin.de/pubbin/oai_publication?VT=1&ID=107088 info:eu-repo/semantics/closedAccess Cold adaptation Metalloenzyme Dimer Psychrophilic bacteria Crystallography info:eu-repo/semantics/article text 2009 fthmiberlin 2023-03-20T00:17:18Z Alkaline phosphatase AP from the cold adapted Vibrio strain G15 21 is among the AP variants with the highest known kcat value. Here the structure of the enzyme at 1.4 resolution is reported and compared to APs from E. coli, human placenta, shrimp and the Antarctic bacterium strain TAB5. The Vibrio AP is a dimer although its monomers are without the long N terminal helix that embraces the other subunit in many other APs. The long insertion loop, previously noted as a special feature of the Vibrio AP, serves a similar function. The surface does not have the high negative charge density as observed in shrimp AP, but a positively charged patch is observed around the active site that may be favourable for substrate binding. The dimer interface has a similar number of non covalent interactions as other APs and the crown domain is the largest observed in known APs. Part of it slopes over the catalytic site suggesting that the substrates may be small molecules. The catalytic serines are refined with multiple conformations in both monomers. One of the ligands to the catalytic zinc ion in binding site M1 is directly connected to the crown domain and is closest to the dimer interface. Subtle movements in metal ligands may help in the release of the product and or facilitate prior dephosphorylation of the covalent intermediate. Intersubunit interactions may be a major factor for promoting active site geometries that lead to the high catalytic activity of Vibrio AP at low temperatures Article in Journal/Newspaper Antarc* Antarctic Helmholtz Zentrum Berlin (HZB): Publications Antarctic The Antarctic |
institution |
Open Polar |
collection |
Helmholtz Zentrum Berlin (HZB): Publications |
op_collection_id |
fthmiberlin |
language |
unknown |
topic |
Cold adaptation Metalloenzyme Dimer Psychrophilic bacteria Crystallography |
spellingShingle |
Cold adaptation Metalloenzyme Dimer Psychrophilic bacteria Crystallography Helland, R. Larsen, R.L. Asgeirsson, B. The 1.4 A crystal structure of the large and cold active Vibrio sp. alkaline phosphatase |
topic_facet |
Cold adaptation Metalloenzyme Dimer Psychrophilic bacteria Crystallography |
description |
Alkaline phosphatase AP from the cold adapted Vibrio strain G15 21 is among the AP variants with the highest known kcat value. Here the structure of the enzyme at 1.4 resolution is reported and compared to APs from E. coli, human placenta, shrimp and the Antarctic bacterium strain TAB5. The Vibrio AP is a dimer although its monomers are without the long N terminal helix that embraces the other subunit in many other APs. The long insertion loop, previously noted as a special feature of the Vibrio AP, serves a similar function. The surface does not have the high negative charge density as observed in shrimp AP, but a positively charged patch is observed around the active site that may be favourable for substrate binding. The dimer interface has a similar number of non covalent interactions as other APs and the crown domain is the largest observed in known APs. Part of it slopes over the catalytic site suggesting that the substrates may be small molecules. The catalytic serines are refined with multiple conformations in both monomers. One of the ligands to the catalytic zinc ion in binding site M1 is directly connected to the crown domain and is closest to the dimer interface. Subtle movements in metal ligands may help in the release of the product and or facilitate prior dephosphorylation of the covalent intermediate. Intersubunit interactions may be a major factor for promoting active site geometries that lead to the high catalytic activity of Vibrio AP at low temperatures |
format |
Article in Journal/Newspaper |
author |
Helland, R. Larsen, R.L. Asgeirsson, B. |
author_facet |
Helland, R. Larsen, R.L. Asgeirsson, B. |
author_sort |
Helland, R. |
title |
The 1.4 A crystal structure of the large and cold active Vibrio sp. alkaline phosphatase |
title_short |
The 1.4 A crystal structure of the large and cold active Vibrio sp. alkaline phosphatase |
title_full |
The 1.4 A crystal structure of the large and cold active Vibrio sp. alkaline phosphatase |
title_fullStr |
The 1.4 A crystal structure of the large and cold active Vibrio sp. alkaline phosphatase |
title_full_unstemmed |
The 1.4 A crystal structure of the large and cold active Vibrio sp. alkaline phosphatase |
title_sort |
1.4 a crystal structure of the large and cold active vibrio sp. alkaline phosphatase |
publishDate |
2009 |
url |
http://www.helmholtz-berlin.de/pubbin/oai_publication?VT=1&ID=107088 |
geographic |
Antarctic The Antarctic |
geographic_facet |
Antarctic The Antarctic |
genre |
Antarc* Antarctic |
genre_facet |
Antarc* Antarctic |
op_relation |
http://www.helmholtz-berlin.de/pubbin/oai_publication?VT=1&ID=107088 |
op_rights |
info:eu-repo/semantics/closedAccess |
_version_ |
1766282006474260480 |